BAC Information

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BAC

Clone NameB6Ng01-205O19
Chromosome2 (Build37)
Map Location 101,827,741 - 101,875,228
singlet/doubletdoublet
Overlap geneLdlrad3
Upstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9
Downstream geneLOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205O19.bB6Ng01-205O19.g
ACCGA025474GA025475
length1,130988
definitionB6Ng01-205O19.b B6Ng01-205O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,874,103 - 101,875,228)(101,827,741 - 101,828,714)
sequence
gaattcaagaataaggccagggccaggcggtggtggctcgtgcctttaat
cccagcacttgggaggcagagacaggccgatttctgagttcaagaccagc
ttggtctacaaagtgagtttcaggacagccagccagggctatacagagaa
accctgtttcaaaaaaccaaaaaaaaaaaaaaaaaaaaaaagaaagaaaa
gaaaaagcataaggccagatgccttagatgccttattatgccataaactc
aggccacgtccccgtttgcctggagatgcttaggcttcggacgtgctcta
tggcctcacatcagaagtagcagtagcaacagcagcattgagataataaa
ttggtgacggtgcctcgacttctaaccacatctgagtcaccacgctggct
tcttaattaggtcgcccacttgcgccttgtctgactcatagccgtccata
taacttgccttctctttacacattggggtgcttaggttcagaagggtcac
accctgcccaagatcacacagcttgtcacacattcacgctcattccaaag
cccatgcttggacgcacttacctgtcacgcttacattttacatctgcctg
caggtgtctaaagcacacacttgccttgcttttgctacctcgaaggtctg
ggtggggtgttttagtgcccttcaaaaatatatcagaatgtgtccagctg
tttccccatgtgttggaggaaggagaagtatccgaggtagcagagagctg
gagttccttgctgttacatattgatagcagaaggctttttatttaaagga
aattgagaccaattatatggcttgcaattaaactcagaaagggaattgaa
agatggagaattaatttcctgtttgtttgtgatacagtatctaggcaaac
agttaatcagcacttgtaatcaacacccaccccatagggctcagccctgt
aagtgcagcctcctctgcctccccgagaacactggttcatcttacacagt
tagcactgccttgctcgccttgctcttgtgcaagtgcttgacaaatgcag
attcctaagtcaccgtgcacagatgctcggctagggcctggggggttgtg
attgtcacagaaattctatttacattccta
gaattcaacttgaagtcattttggcctgttttcaggaaagcagcctatct
ccaggaatcacacaaatcatcctgtggcattccaaaatgtccttcagtca
cagataggtgacatggtggtgctttttacaccactgatggcaattggtga
agccagccaggtgccatggcactcaaaataaacatacccagaatccaaga
caggatcttcttcagggagctcatactacaatgagtcagcttcccaactg
aactatctgccatcttgagtgaagtcagcaacactggaaaaagtgcgtac
atctatctaaacactggacatctcccagtatcaaaaacgtatggagtagt
agcagtaatggtaatttcacaaaaaccatgcccactgcttactacgcaat
aagcacgagtcataagcatcagcatggtcccactcccacaagaccatcaa
agcctgtgcacatgcaggtattacgcatctgtgtgtatgtattgcacata
aatatatgtacagtcatacaaaagattgcaagcatggcaggcggagagga
atgtgtgttttctggagtgactttctggagcagagtgaagggcatatata
ctaacattgcagagagaggcatccttttcagggctggtggcaatcccctc
tcaagaggccacagtacatagccacttcttacaaaggggttgtgggatgg
tacacttacaagagatcttctttttttgtttgtttggttgtttttttttt
tttctctctacctgggtctgagctgtcaaggatgcacacactatttgttt
acaaaaatggaaaagatcaaacatcaatgaaaataatacaaaggaaaatg
aaatctagtgaagccttcacctatttttcaaatgaaggtaatacaccagg
caggaaaaaaattggaccaaggtatggaaggaaagggttccaaatccatc
tggctgggaacaggggttggggtagtggggattgtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101874103_101875228
seq2: B6Ng01-205O19.b_45_1174 (reverse)

seq1  TAGG-ATGTA---ATGATTTCTGTGAC-ATCACAACCCCCCAGGCCCTAG  45
      |||| |||||   |  ||||||||||| ||||||||||||||||||||||
seq2  TAGGAATGTAAATAGAATTTCTGTGACAATCACAACCCCCCAGGCCCTAG  50

seq1  CCGAGCATCTGTGCACGGTGACTTAGGAATCTGCATTTGTCAAGCACCTG  95
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  CCGAGCATCTGTGCACGGTGACTTAGGAATCTGCATTTGTCAAGCA-CTT  99

seq1  GCAC-AGAGCAAGGCCGAGCAAGGCAGTGCTAACTGTGTAAGATGGACCA  144
      |||| ||||||||| |||||||||||||||||||||||||||||| ||||
seq2  GCACAAGAGCAAGG-CGAGCAAGGCAGTGCTAACTGTGTAAGATGAACCA  148

seq1  GTGTTCTCGGGGGAGGCAGAGGAGGCTGCACTTACAGGGCTGAGCCCTAT  194
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTC-GGGGAGGCAGAGGAGGCTGCACTTACAGGGCTGAGCCCTAT  197

seq1  GGGGTGGGTGTTGA-TACAAGTGCTGATTAACTGTTTGCCTAGATACTGT  243
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGTGTTGATTACAAGTGCTGATTAACTGTTTGCCTAGATACTGT  247

seq1  ATCACAAACAAACAGGAAATTAATTCTCCATCTTTCAATTCCCTTTCTGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAACAAACAGGAAATTAATTCTCCATCTTTCAATTCCCTTTCTGA  297

seq1  GTTTAATTGCAAGCCATATAATTGGTCTCAATTTCCTTTAAATAAAAAGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTGCAAGCCATATAATTGGTCTCAATTTCCTTTAAATAAAAAGC  347

seq1  CTTCTGCTATCAATATGTAACAGCAAGGAACTCCAGCTCTCTGCTACCTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTATCAATATGTAACAGCAAGGAACTCCAGCTCTCTGCTACCTC  397

seq1  GGATACTTCTCCTTCCTCCAACACATGGGGAAACAGCTGGACACATTCTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTTCTCCTTCCTCCAACACATGGGGAAACAGCTGGACACATTCTG  447

seq1  ATATATTTTTGAAGGGCACTAAAACACCCCACCCAGACCTTCGAGGTAGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTTGAAGGGCACTAAAACACCCCACCCAGACCTTCGAGGTAGC  497

seq1  AAAAGCAAGGCAAGTGTGTGCTTTAGACACCTGCAGGCAGATGTAAAATG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAGGCAAGTGTGTGCTTTAGACACCTGCAGGCAGATGTAAAATG  547

seq1  TAAGCGTGACAGGCAAGTGCGTCCAAGCATGGGCTTTGGAATGAGCGTGA  593
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAGCGTGACAGGTAAGTGCGTCCAAGCATGGGCTTTGGAATGAGCGTGA  597

seq1  ATGTGTGACAAGCTGTGTGATCTTGGGCAGGGTGTGACCCTTCTGAACCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGACAAGCTGTGTGATCTTGGGCAGGGTGTGACCCTTCTGAACCT  647

seq1  AAGCACCCCAATGTGTAAAGAGAAGGCAAGTTATATGGACGGCTATGAGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCCCAATGTGTAAAGAGAAGGCAAGTTATATGGACGGCTATGAGT  697

seq1  CAGACAAGGCGCAAGTGGGCGACCTAATTAAGAAGCCAGCGTGGTGACTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGGCGCAAGTGGGCGACCTAATTAAGAAGCCAGCGTGGTGACTC  747

seq1  AGATGTGGTTAGAAGTCGAGGCACCGTCACCAATTTATTATCTCAATGCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGTTAGAAGTCGAGGCACCGTCACCAATTTATTATCTCAATGCT  797

seq1  GCTGTTGCTACTGCTACTTCTGATGTGAGGCCATAGAGCACGTCCGAAGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGCTACTGCTACTTCTGATGTGAGGCCATAGAGCACGTCCGAAGC  847

seq1  CTAAGCATCTCCAGGCAAACGGGGACGTGGCCTGAGTTTATGGCATAATA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCATCTCCAGGCAAACGGGGACGTGGCCTGAGTTTATGGCATAATA  897

seq1  AGGCATCTAAGGCATCTGGCCTTATGCTTTTTCTTTTCTTTCTTTTTTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCTAAGGCATCTGGCCTTATGCTTTTTCTTTTCTTTCTTTTTTTT  947

seq1  TTTTTTTTTTTTTTTGGTTTTTTGAAACAGGGTTTCTCTGTATAGCCCTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTGGTTTTTTGAAACAGGGTTTCTCTGTATAGCCCTG  997

seq1  GCTGGCTGTCCTGAAACTCACTTTGTAGACCAAGCTGGTCTTGAACTCAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGTCCTGAAACTCACTTTGTAGACCAAGCTGGTCTTGAACTCAG  1047

seq1  AAATCGGCCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCACGAGCCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGGCCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCACGAGCCA  1097

seq1  CCACCGCCTGGCCCTGGCCTTATTCTTGAATTC  1126
      |||||||||||||||||||||||||||||||||
seq2  CCACCGCCTGGCCCTGGCCTTATTCTTGAATTC  1130

seq1: chr2_101827741_101828714
seq2: B6Ng01-205O19.g_70_1057

seq1  GAATTCAACTTGAAGTCATTTTGGCCTGTTTTCAGGAAAGCAGCCTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTGAAGTCATTTTGGCCTGTTTTCAGGAAAGCAGCCTATCT  50

seq1  CCAGGAATCACACAAATCATCCTGTGGCATTCCAAAATGTCCTTCAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAATCACACAAATCATCCTGTGGCATTCCAAAATGTCCTTCAGTCA  100

seq1  CAGATAGGTGACATGGTGGTGCTTTTTACACCACTGATGGCAATTGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGGTGACATGGTGGTGCTTTTTACACCACTGATGGCAATTGGTGA  150

seq1  AGCCAGCCAGGTGCCATGGCACTCAAAATAAACATACCCAGAATCCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCCAGGTGCCATGGCACTCAAAATAAACATACCCAGAATCCAAGA  200

seq1  CAGGATCTTCTTCAGGGAGCTCATACTACAATGAGTCAGCTTCCCAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCTTCTTCAGGGAGCTCATACTACAATGAGTCAGCTTCCCAACTG  250

seq1  AACTATCTGCCATCTTGAGTGAAGTCAGCAACACTGGAAAAAGTGCGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCTGCCATCTTGAGTGAAGTCAGCAACACTGGAAAAAGTGCGTAC  300

seq1  ATCTATCTAAACACTGGACATCTCCCAGTATCAAAAACGTATGGAGTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTAAACACTGGACATCTCCCAGTATCAAAAACGTATGGAGTAGT  350

seq1  AGCAGTAATGGTAATTTCACAAAAACCATGCCCACTGCTTACTACGCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAATGGTAATTTCACAAAAACCATGCCCACTGCTTACTACGCAAT  400

seq1  AAGCACGAGTCATAAGCATCAGCATGGTCCCACTCCCACAAGACCATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACGAGTCATAAGCATCAGCATGGTCCCACTCCCACAAGACCATCAA  450

seq1  AGCCTGTGCACATGCAGGTATTACGCATCTGTGTGTATGTATTGCACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTGCACATGCAGGTATTACGCATCTGTGTGTATGTATTGCACATA  500

seq1  AATATATGTACAGTCATACAAAAGATTGCAAGCATGGCAGGCGGAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGTACAGTCATACAAAAGATTGCAAGCATGGCAGGCGGAGAGGA  550

seq1  ATGTGTGTTTTCTGGAGTGACTTTCTGGAGCAGAGTGAAGGGCATATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTTTTCTGGAGTGACTTTCTGGAGCAGAGTGAAGGGCATATATA  600

seq1  CTAACATTGCAGAGAGAGGCATCC-TTTCAGGGCTGGTGGCAATCCCCTC  649
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTAACATTGCAGAGAGAGGCATCCTTTTCAGGGCTGGTGGCAATCCCCTC  650

seq1  TCAAGAGGCCACAGTACATAGCCACTTCTACAAAAGGGGTTGTGGGATGG  699
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  TCAAGAGGCCACAGTACATAGCCACTTCTTACAAAGGGGTTGTGGGATGG  700

seq1  TACACTTACAAGAGATCTTCTTTTTTTGTTTGTTTGGTTGTTTTTTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTACAAGAGATCTTCTTTTTTTGTTTGTTTGGTTGTTTTTTTTTT  750

seq1  TTTCTCTCTACCTGGTTCTGAGCTGTCAAGGATGCACACACTATTTGTTT  799
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTACCTGGGTCTGAGCTGTCAAGGATGCACACACTATTTGTTT  800

seq1  ACAAAAAT-GAAAAGATCAAACATCAATGAAAATAATACAAAGGAAAATG  848
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATGGAAAAGATCAAACATCAATGAAAATAATACAAAGGAAAATG  850

seq1  AAATCTAGTGAAGTCTTCACCTATTTTTCAAATGAAGGTAATACA-CAGG  897
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  AAATCTAGTGAAGCCTTCACCTATTTTTCAAATGAAGGTAATACACCAGG  900

seq1  CAGGAAAAAAA-TGGACCAA-GTATG--AAGAAAGGGTCCCAGATCCATC  943
      ||||||||||| |||||||| |||||  | |||||||| ||| |||||||
seq2  CAGGAAAAAAATTGGACCAAGGTATGGAAGGAAAGGGTTCCAAATCCATC  950

seq1  T-GCT-GGAACAGGGGTTGG----GTGGGGA-TGTCTT  974
      | ||| ||||||||||||||    ||||||| ||||||
seq2  TGGCTGGGAACAGGGGTTGGGGTAGTGGGGATTGTCTT  988