BAC Information

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BAC

Clone NameB6Ng01-207O05
Chromosome2 (Build37)
Map Location 90,709,858 - 90,827,964
singlet/doubletdoublet
Overlap geneC1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1
Upstream geneOlfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2
Downstream geneLOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207O05.bB6Ng01-207O05.g
ACCGA026917GA026918
length1,1791,085
definitionB6Ng01-207O05.b B6Ng01-207O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,826,796 - 90,827,964)(90,709,858 - 90,710,947)
sequence
gaattcaaagagcaatgatccaccatcatttctggaaggaaatccaactt
aaacgcagccatcacctcactctccccttcagaagccaatgataataact
tgctgcacttgtctgatccacaaatatacacagctttagcttcctgggcc
ccacaaaaaacacaaagtggaaacggagctcagggaaaccagcagtaagt
gccacagaaagaggcaggtctggggaaggggctgggaaagggagtattgg
actgaaatggggatgcgaccatgtgaagggaggctcagctcagcacacaa
tgaaagtgctgatgcaccaggcttgttttgtgtgattttccctggcgaag
cagtactaagtgcactgtcagataaatagtgtgtcagattcatgaagata
gtgtagccaacaaagcagaagaaacacaaacttgtttcacatcatccaaa
gtcctccctataaatcagatttaaggccccacagatctaaaattacctga
aggaaaaagcaaataggcaaaacaaaacaacagcaacaacaacaacaaaa
agtaaccaagaagcctacctcacctcatgtggtgaaaacacttttaaaga
gctaattgttggccttgggtttaaacttagtctccatgtgtttgaagact
gcaataaacagggttcaaattaatcccataacagtcacaaaagaaggaac
aatttgctattactcacacctgtcctgtgtgatttgaacagaaagaagta
agaccaagagaagcaggctgttggagaaactggccatctaaaccctgcta
ctgaccaactacttctgccacactggccctgttctttttagacgtgctaa
ggataaagcaataaatcagtcgctcatcagacaggccttttaaaaccctg
ggttagtatcactcactaggtggacacaggcaaaatatgtttactcttct
gaatctttactagaaattaaaaggaacagtaatattattatattatatta
tataatattagtaatatctgcacacacaacacaccccttaccatgtagcc
tggctgtctagaacttggattctgttagaactagcctggtcttcaaaacc
tcaagagcctccacacttgcttctctgcatggaagtattgggattaaaac
atgttgccacttactactgacactttcta
gaattcaaccttctcatctctaaaataagaaataatgcttactggagtat
taaatcaagtatatgggtccagttagcatttggtgcgttgtagctattac
tgctaggataggggatattttacagataacagcaaagtcaataaaattca
taaaggagttgaagagcagcgggactgcttctctggctgtcctacccttt
cttcaaggccattgaaggaacacctggagcagagaccagcacattctact
attcagcagacacttgttggatatgtgtccagctgtctccgcacagacct
gcctgagtgtctcacagaatcccacactgagttacatagtagcctctgtt
cccaagcctgtagcagtatttctgctctccaagtttctaagacatgttat
caacaccctgtttcctaaggcagaaaccctggagtcctctctgccctgcc
tctcttcagaaaaatcaccctaggttctcaggagtgctgcctcagaggtg
tgtctcctatcttttctgtccaccgagggaggacagaaggtagataagcc
tcaggctagctctgttgtggctagggcacaggagtctcttgcagttttat
ctaccctaagggccatgggtggtatctttttctgacccacagctctcaag
acttctccctgccttcttttcatcctgcagcctgagcccaagccccacag
gcacaggtccgcagcctctgctctatgtttgtccgccagcagctgctatc
tgtgtttatcttccatgcagcctttgtgcaggaggagctggggctgagag
acagggctatttataaatggaaagtgggtgtagagttctgcagttcacag
atgttttaaacagcctaattcctcctcgcctctttgaaatcctgtccacc
cccctcattgcctaacttcccaaaatcatctacatttctgtcctcccctt
tggtcagagcacaaggaaaaaacaaaacaaacaataaaaatttcagccta
cggataagcttaggtgggacagttcaccaagaatgtagaccatgaagaac
ccctgagctaagtgagttcagtaaccacatgtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_90826796_90827964
seq2: B6Ng01-207O05.b_48_1226 (reverse)

seq1  TAGAAAG-GTCAGTAGATTAGTGGGGCACATG-TTTAATCCCAATACTTT  48
      ||||||| |||||||| | ||| ||  ||||| |||||||||||||||| 
seq2  TAGAAAGTGTCAGTAG-TAAGT-GGCAACATGTTTTAATCCCAATACTTC  48

seq1  CAAG-GCAGAAGCA--GGTGGA-GCTC-TGA-GTTTTG-AGGCCAGGCTA  91
      || |   |||||||   ||||| |||| ||| |||||| || ||||||||
seq2  CATGCAGAGAAGCAAGTGTGGAGGCTCTTGAGGTTTTGAAGACCAGGCTA  98

seq1  G-TCT-ACAGA--TCAAGTTCTAGGACAGCCAGGGCTACATGGTAAGGGG  137
      | ||| |||||   ||||||||| |||||||| |||||||||||||||||
seq2  GTTCTAACAGAATCCAAGTTCTA-GACAGCCA-GGCTACATGGTAAGGGG  146

seq1  TGTG-TGTGTGTGCAGAATATTACTATTATTATATAATATAATAT-ATAA  185
      |||| ||||||||||| ||||||||| |||||||||||||||||| ||||
seq2  TGTGTTGTGTGTGCAG-ATATTACTAATATTATATAATATAATATAATAA  195

seq1  TATTACTGTTCCTTTTAATTTCTAGTAAAGATTCAGAAGAGTAAACATAT  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTGTTCCTTTTAATTTCTAGTAAAGATTCAGAAGAGTAAACATAT  245

seq1  TTTGCCTGTGTCCACCTAGTGAGTGATACTAACCCAGGGTTTTAAAAGGC  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGTGTCCACCTAGTGAGTGATACTAACCCAGGGTTTTAAAAGGC  295

seq1  CTGTCTGATGAGCGACTGATTTATTGCTTTATCCTTAGCACGTCTAAAAA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGATGAGCGACTGATTTATTGCTTTATCCTTAGCACGTCTAAAAA  345

seq1  GAACAGGGCCAGTGTGGCAGAAGTAGTTGGTCAGTAGCAGGGTTTAGATG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGCCAGTGTGGCAGAAGTAGTTGGTCAGTAGCAGGGTTTAGATG  395

seq1  GCCAGTTTCTCCAACAGCCTGCTTCTCTTGGTCTTACTTCTTTCTGTTCA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTTCTCCAACAGCCTGCTTCTCTTGGTCTTACTTCTTTCTGTTCA  445

seq1  AATCACACAGGACAGGTGTGAGTAATAGCAAATTGTTCCTTCTTTTGTGA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACACAGGACAGGTGTGAGTAATAGCAAATTGTTCCTTCTTTTGTGA  495

seq1  CTGTTATGGGATTAATTTGAACCCTGTTTATTGCAGTCTTCAAACACATG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATGGGATTAATTTGAACCCTGTTTATTGCAGTCTTCAAACACATG  545

seq1  GAGACTAAGTTTAAACCCAAGGCCAACAATTAGCTCTTTAAAAGTGTTTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTAAGTTTAAACCCAAGGCCAACAATTAGCTCTTTAAAAGTGTTTT  595

seq1  CACCACATGAGGTGAGGTAGGCTTCTTGGTTACTTTTTGTTGTTGTTGTT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACATGAGGTGAGGTAGGCTTCTTGGTTACTTTTTGTTGTTGTTGTT  645

seq1  GCTGTTGTTTTGTTTTGCCTATTTGCTTTTTCCTTCAGGTAATTTTAGAT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGTTTTGTTTTGCCTATTTGCTTTTTCCTTCAGGTAATTTTAGAT  695

seq1  CTGTGGGGCCTTAAATCTGATTTATAGGGAGGACTTTGGATGATGTGAAA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGGCCTTAAATCTGATTTATAGGGAGGACTTTGGATGATGTGAAA  745

seq1  CAAGTTTGTGTTTCTTCTGCTTTGTTGGCTACACTATCTTCATGAATCTG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTGTGTTTCTTCTGCTTTGTTGGCTACACTATCTTCATGAATCTG  795

seq1  ACACACTATTTATCTGACAGTGCACTTAGTACTGCTTCGCCAGGGAAAAT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTATTTATCTGACAGTGCACTTAGTACTGCTTCGCCAGGGAAAAT  845

seq1  CACACAAAACAAGCCTGGTGCATCAGCACTTTCATTGTGTGCTGAGCTGA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAACAAGCCTGGTGCATCAGCACTTTCATTGTGTGCTGAGCTGA  895

seq1  GCCTCCCTTCACATGGTCGCATCCCCATTTCAGTCCAATACTCCCTTTCC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCTTCACATGGTCGCATCCCCATTTCAGTCCAATACTCCCTTTCC  945

seq1  CAGCCCCTTCCCCAGACCTGCCTCTTTCTGTGGCACTTACTGCTGGTTTC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCTTCCCCAGACCTGCCTCTTTCTGTGGCACTTACTGCTGGTTTC  995

seq1  CCTGAGCTCCGTTTCCACTTTGTGTTTTTTGTGGGGCCCAGGAAGCTAAA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTCCGTTTCCACTTTGTGTTTTTTGTGGGGCCCAGGAAGCTAAA  1045

seq1  GCTGTGTATATTTGTGGATCAGACAAGTGCAGCAAGTTATTATCATTGGC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTATATTTGTGGATCAGACAAGTGCAGCAAGTTATTATCATTGGC  1095

seq1  TTCTGAAGGGGAGAGTGAGGTGATGGCTGCGTTTAAGTTGGATTTCCTTC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGGGGAGAGTGAGGTGATGGCTGCGTTTAAGTTGGATTTCCTTC  1145

seq1  CAGAAATGATGGTGGATCATTGCTCTTTGAATTC  1169
      ||||||||||||||||||||||||||||||||||
seq2  CAGAAATGATGGTGGATCATTGCTCTTTGAATTC  1179

seq1: chr2_90709858_90710947
seq2: B6Ng01-207O05.g_66_1150

seq1  GAATTCAACCTTCTCATCTCTAAAATAAGAAATAATGCTTACTGGAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTTCTCATCTCTAAAATAAGAAATAATGCTTACTGGAGTAT  50

seq1  TAAATCAAGTATATGGGTCCAGTTAGCATTTGGTGCGTTGTAGCTATTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAAGTATATGGGTCCAGTTAGCATTTGGTGCGTTGTAGCTATTAC  100

seq1  TGCTAGGATAGGGGATATTTTACAGATAACAGCAAAGTCAATAAAATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGATAGGGGATATTTTACAGATAACAGCAAAGTCAATAAAATTCA  150

seq1  TAAAGGAGTTGAAGAGCAGCGGGACTGCTTCTCTGGCTGTCCTACCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAGTTGAAGAGCAGCGGGACTGCTTCTCTGGCTGTCCTACCCTTT  200

seq1  CTTCAAGGCCATTGAAGGAACACCTGGAGCAGAGACCAGCACATTCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGGCCATTGAAGGAACACCTGGAGCAGAGACCAGCACATTCTACT  250

seq1  ATTCAGCAGACACTTGTTGGATATGTGTCCAGCTGTCTCCGCACAGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCAGACACTTGTTGGATATGTGTCCAGCTGTCTCCGCACAGACCT  300

seq1  GCCTGAGTGTCTCACAGAATCCCACACTGAGTTACATAGTAGCCTCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGTGTCTCACAGAATCCCACACTGAGTTACATAGTAGCCTCTGTT  350

seq1  CCCAAGCCTGTAGCAGTATTTCTGCTCTCCAAGTTTCTAAGACATGTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCCTGTAGCAGTATTTCTGCTCTCCAAGTTTCTAAGACATGTTAT  400

seq1  CAACACCCTGTTTCCTAAGGCAGAAACCCTGGAGTCCTCTCTGCCCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCCTGTTTCCTAAGGCAGAAACCCTGGAGTCCTCTCTGCCCTGCC  450

seq1  TCTCTTCAGAAAAATCACCCTAGGTTCTCAGGAGTGCTGCCTCAGAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCAGAAAAATCACCCTAGGTTCTCAGGAGTGCTGCCTCAGAGGTG  500

seq1  TGTCTCCTATCTTTTCTGTCCACCGAGGGAGGACAGAAGGTAGATAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTATCTTTTCTGTCCACCGAGGGAGGACAGAAGGTAGATAAGCC  550

seq1  TCAGGCTAGCTCTGTTGTGGCTAGGGCACAGGAGTCTCTTGCAGTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTAGCTCTGTTGTGGCTAGGGCACAGGAGTCTCTTGCAGTTTTAT  600

seq1  CTACCCTAAGGGCCATGGGTGGTATCTTTTTCTGACCCACAGCTCTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTAAGGGCCATGGGTGGTATCTTTTTCTGACCCACAGCTCTCAAG  650

seq1  ACTTCTCCCTGCCTTCTTTTCATCCTGCAGCCTGAGCCCAAGCCCCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCCTGCCTTCTTTTCATCCTGCAGCCTGAGCCCAAGCCCCACAG  700

seq1  GCACAGGTCCGCAGCCTCTGCTCTATGTTTGTCCGCCAGCAGCTGCTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGTCCGCAGCCTCTGCTCTATGTTTGTCCGCCAGCAGCTGCTATC  750

seq1  TGTG-TTATCTTCCATGCAGCCTTTGTGCAGGAGGAGCT-GGGCTGAGAG  798
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTGTTTATCTTCCATGCAGCCTTTGTGCAGGAGGAGCTGGGGCTGAGAG  800

seq1  ACAGGGCTATTTATAAATGGAAAGTGGGTGTAGAGTTCTGCAG-TCACAG  847
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACAGGGCTATTTATAAATGGAAAGTGGGTGTAGAGTTCTGCAGTTCACAG  850

seq1  ATGTTTTAAACAGCCTAATTCCTCCTCGCCTCTTTGAAATTCCTGTCCA-  896
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  ATGTTTTAAACAGCCTAATTCCTCCTCGCCTCTTTGAAA-TCCTGTCCAC  899

seq1  CCCCCTCATTGCCTAACTTTCCCCAAATCATCTACATTTCTGTCCTCCCC  946
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  CCCCCTCATTGCCTAAC-TTCCCAAAATCATCTACATTTCTGTCCTCCCC  948

seq1  -TTGGTCAGAGCCACAAAGGAAAAAACAAAACAAAACAATAAAAA-TTCA  994
       |||||||||| ||| |||||||||||||||| |||||||||||| ||||
seq2  TTTGGTCAGAG-CAC-AAGGAAAAAACAAAAC-AAACAATAAAAATTTCA  995

seq1  G-CTACAGAATAAAGCTAAGGGTGGGGACAGTTCACCAAGAATGTAAGAC  1043
      | |||| ||   ||||| |||   ||||||||||||||||||||| ||| 
seq2  GCCTACGGA--TAAGCTTAGG--TGGGACAGTTCACCAAGAATGT-AGA-  1039

seq1  CCATG-AGAACCCCTGAGCTAAGTGGAGTCCAGGTACACACATGTGTT  1090
      ||||| |||||||||||||||||| |||| || |||  ||||||||||
seq2  CCATGAAGAACCCCTGAGCTAAGT-GAGTTCA-GTAACCACATGTGTT  1085