BAC Information

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BAC

Clone NameB6Ng01-208P21
Chromosome13 (Build37)2 (Build37)
Map Location 4,853,938 - 4,855,05686,823,353 - 86,823,676
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCalm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208P21.bB6Ng01-208P21.g
ACCGA027726GA027727
length1,126697
definitionB6Ng01-208P21.b B6Ng01-208P21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,853,938 - 4,855,056)(86,823,353 - 86,823,676)
sequence
gaattccccaactggggatctattccacatgcagacacgaaacccagaca
ttattgatgatatgaagaagtgcttactggcaggaacctgatacagctgt
ctcctgagaggctctgccatatgctgactaatacagatgtggaagctcac
agccaactataggactgagcactgggcccccaatggaggaattaggggag
ggaccgaaggagctgaaggggccttatctggcatgaatgggagggtaagc
ccttggtcctgtgaaggcttgatgccccagtgtagaggaatgctagcaca
gtgaagcaggaatggctaggtggatgagggagcaccctcagaagcagggt
tagaggtgacgggatcgggggtttgaagagtggaaacctggaaagggcgt
aatgttagaaatgtagataaataaaataaataaaataaaataaaataaaa
tatatcaatcagtcaaaataaaaaacattaaatggacaataaattatatt
ataagtaaagattctgaagaaattctattttattcattaaataaagtgaa
attctaggtagaaatgtagatagatatgtctgtgcctatgattataataa
tattaagtgaatataactgtaagttaagtaaaaccaactactactattcc
caaaactagaataattcacaataaagccaggtttggttgtagggaaacaa
attatgtaattgtcgggattgcaaactggtacaaccactctggaaatcaa
tctggatgttcctcagaaaattggatatatatttttcctgaagacccagc
aatatcattcttgggaatatacccaaaagtagccccaccatgtcacaggg
gcatgtgttcatagcagccttattttgtgatagccagaatctggaaacaa
cctagatgtcccacaacaaaagaatgggatatagacaacatggtttcatt
tatacattggaatactactcagctattagacgaggacatcctgagttgca
ggcaattggattggactaggaaatattcatcctgaatggggtaactcaga
ctcttaaggacaccgcatggtatggactccactatgagtggatataggaa
gaagacagaaaaggtacggtagaata
gaattccaactctcctcaaactattccacaaaatagaaacagaaggtact
ctaaccagttcattctatgaagccacaattactctgatacctaaaccaca
caaagatccaacaaagaaagagaacttcagaccaatttcccttatgaata
tcaatacaaaaatattcaataaaatcctcacaaaccaaccccaagaacac
atcaaaacaatcatccatcatgacgaagtaggcttcatcccagttatgca
gggatggtttaatatatggaaatccatcaacgtagtaatccactatgtaa
acaaactcaaagacaaaaatcacatgattatctcgttagatgctgagaaa
gcaattgacaaaatccaacaacccttcatgataaaagtcatggaaagatc
aggaattcaaggcctatacctaaacataataaaagaaatagacagcaaac
cagtagccagcatcaaagtaaatggagagaagatggaagcaatcccacta
aaatcagggactagacaaggctgcccactttctccctgcctattcaatat
agtacttgaagtcctatccatagcaattagacaagagaagatcaaggtga
taaaaataggaaaggaagaagtcaaaatatcactatttgcagatgatatg
gttgtggatatatggatatatatatatatatatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_4853938_4855056
seq2: B6Ng01-208P21.b_47_1172

seq1  GAATTCCCCAACTGGGGATCTATTCCACATGCAGACACGAAACCCAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAACTGGGGATCTATTCCACATGCAGACACGAAACCCAGACA  50

seq1  TTATTGATGATATGAAGAAGTGCTTACTGGCAGGAACCTGATACAGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGATGATATGAAGAAGTGCTTACTGGCAGGAACCTGATACAGCTGT  100

seq1  CTCCTGAGAGGCTCTGCCATATGCTGACTAATACAGATGTGGAAGCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGAGGCTCTGCCATATGCTGACTAATACAGATGTGGAAGCTCAC  150

seq1  AGCCAACTATAGGACTGAGCACTGGGCCCCCAATGGAGGAATTAGGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACTATAGGACTGAGCACTGGGCCCCCAATGGAGGAATTAGGGGAG  200

seq1  GGACCGAAGGAGCTGAAGGGGCCTTATCTGGCATGAATGGGAGGGTAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGAAGGAGCTGAAGGGGCCTTATCTGGCATGAATGGGAGGGTAAGC  250

seq1  CCTTGGTCCTGTGAAGGCTTGATGCCCCAGTGTAGAGGAATGCTAGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTCCTGTGAAGGCTTGATGCCCCAGTGTAGAGGAATGCTAGCACA  300

seq1  GTGAAGCAGGAATGGCTAGGTGGATGAGGGAGCACCCTCAGAAGCAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCAGGAATGGCTAGGTGGATGAGGGAGCACCCTCAGAAGCAGGGT  350

seq1  TAGAGGTGACGGGATCGGGGGTTTGAAGAGTGGAAACCTGGAAAGGGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTGACGGGATCGGGGGTTTGAAGAGTGGAAACCTGGAAAGGGCGT  400

seq1  AATGTTAGAAATGTAGATAAATAAAATAAATAAAATAAAATAAAATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAGAAATGTAGATAAATAAAATAAATAAAATAAAATAAAATAAAA  450

seq1  TATATCAATCAGTCAAAATAAAAAACATTAAATGGACAATAAATTATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAATCAGTCAAAATAAAAAACATTAAATGGACAATAAATTATATT  500

seq1  ATAAGTAAAGATTCTGAAGAAATTCTATTTTATTCATTAAATAAAGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAAAGATTCTGAAGAAATTCTATTTTATTCATTAAATAAAGTGAA  550

seq1  ATTCTAGGTAGAAATGTAGATAGATATGTCTGTGCCTATGATTATAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGGTAGAAATGTAGATAGATATGTCTGTGCCTATGATTATAATAA  600

seq1  TATTAAGTGAATATAACTGTAAGTTAAGTAAAACCAACTACTACTATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTGAATATAACTGTAAGTTAAGTAAAACCAACTACTACTATTCC  650

seq1  CAAAACTAGAATAATTCACAATAAAGCCAGGTTTGGTTGTAGGGAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTAGAATAATTCACAATAAAGCCAGGTTTGGTTGTAGGGAAACAA  700

seq1  ATTATGTAATTGTCGGGATTGCAAACTGGTACAACCACTCTGGAAATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTAATTGTCGGGATTGCAAACTGGTACAACCACTCTGGAAATCAA  750

seq1  TCTGGATGTTCCTCAGAAAATTGGATATATA-TTTTCCTGAAGACCCAGC  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTGGATGTTCCTCAGAAAATTGGATATATATTTTTCCTGAAGACCCAGC  800

seq1  AATATCATTCTTGGGAATATACCCAAAAGTAGCCCCACCATGTCACAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATTCTTGGGAATATACCCAAAAGTAGCCCCACCATGTCACAGGG  850

seq1  GCATGTGTTCATAGCAGCCTTA-TTTGTGATAGCCAGAATCTGGAAACAA  898
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCATGTGTTCATAGCAGCCTTATTTTGTGATAGCCAGAATCTGGAAACAA  900

seq1  CCTAGATGTCCCACAACAAAAGAAT-GGATATAGACAACATGG-TTCATT  946
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  CCTAGATGTCCCACAACAAAAGAATGGGATATAGACAACATGGTTTCATT  950

seq1  TATACAATGGAATACTACTCAGCTATTAAGAACGAGGACATCCTGAGTTT  996
      |||||| |||||||||||||||||||||   |||||||||||||||| ||
seq2  TATACATTGGAATACTACTCAGCTATTA--GACGAGGACATCCTGAG-TT  997

seq1  GCAGGCAAATGGATGGAACTAGAAAATA-TCATCCTGAATGGGGTAACTC  1045
      |||||||| ||||| | ||||| ||||| |||||||||||||||||||||
seq2  GCAGGCAATTGGATTGGACTAGGAAATATTCATCCTGAATGGGGTAACTC  1047

seq1  AGACCCTAAAGGACA-CGCATGGTATGGGACT-CACTAATAAGTGGATAT  1093
      |||| || ||||||| |||||||||| ||||| |||| || |||||||||
seq2  AGACTCTTAAGGACACCGCATGGTAT-GGACTCCACT-ATGAGTGGATAT  1095

seq1  TAGAAGA--AAAGAAAAAGTAC---AGAATA  1119
        |||||  | |||||| ||||   ||||||
seq2  AGGAAGAAGACAGAAAAGGTACGGTAGAATA  1126

seq1: chr2_86823353_86823676
seq2: B6Ng01-208P21.g_397_717

seq1  ATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACAACCATTCAT  50
      |||||||||||||| || |||||| ||||||| ||||||||||| |||||
seq2  ATCTCGTTAGATGCTGAGAAAGCAATTGACAAAATCCAACAACCCTTCAT  50

seq1  GATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGA  100
      |||||||||  |||||||||||||||||||||||| |||||||||||| |
seq2  GATAAAAGTCATGGAAAGATCAGGAATTCAAGGCCTATACCTAAACATAA  100

seq1  TAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAG  150
      |||||| |||  |||||||||||||||||| |||||||||||||||||||
seq2  TAAAAGAAATAGACAGCAAACCAGTAGCCAGCATCAAAGTAAATGGAGAG  150

seq1  AAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACT  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACT  200

seq1  TTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTC  250
      |||||||| ||| ||||| ||||||||||||||  || ||| ||||||| 
seq2  TTCTCCCTGCCTATTCAATATAGTACTTGAAGTCCTATCCATAGCAATTA  250

seq1  GACAACAAAAGGAGATCAAGGGGATACAAATTGGAAACGAGGAAGTCAAA  300
      |   |||| || ||||||||| |||| |||| ||||| || |||||||||
seq2  G---ACAAGAGAAGATCAAGGTGATAAAAATAGGAAAGGAAGAAGTCAAA  297

seq1  ATATCACTTTTTGCAGATGATATG  324
      |||||||| |||||||||||||||
seq2  ATATCACTATTTGCAGATGATATG  321