BAC Information

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BAC

Clone NameB6Ng01-209N02
Chromosome2 (Build37)
Map Location 63,010,301 - 63,174,893
singlet/doubletdoublet
Overlap geneKcnh7
Upstream geneSlc4a10, Dpp4, Gcg, Fap, Ifih1, Gca
Downstream geneEG667257, Fign
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209N02.bB6Ng01-209N02.g
ACCGA028335GA028336
length977451
definitionB6Ng01-209N02.b B6Ng01-209N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,010,301 - 63,011,686)(63,174,437 - 63,174,893)
sequence
gaattctttaatttttaaatggtaaattatttaaataactggtactaatt
ttttaaagtctgagactttaaaatctcttagtaaattactaaaataaaat
gtaaacatgactggtagtttttgagagaacgattctggtgtgaaaatgga
catttgctagccagctcatttagctattcaggaagttgtcattaccacct
ctatataacaatattcagcatcaatgttctgtaagtaataaaactgattg
cttctggtattttggatatgtaaacatttgagtttaaaatttgatgatca
gataagatcaattttgactgttttaactaaaattaaaaggaaagccatat
attattattcacaagaaataacagaaaatacattcccttttggacggtaa
aatataatagaagtaccaaacatgaactcatcgttttagatccatatatt
attttatccaacagttatgcttctagaaatttgtgtataaaggaatactc
cacagaagcaaaatgaatgtatattttcttagcatgcctttacaattgta
caaagttagaatccgtaaaatatttcttaagtgttttgataatgtcctat
gctctctaatataatatatattgaatatcacagtaatttgtgtgttgtgg
ttatggggaaaatatgcaatcattataaaacattttgattcggcacacat
ttttagggaagaaatcagactatccatataatgctgtcctgatcttgttt
taatagagaccatctgcatatatgcacgcacaggagcatatttgaaatgt
agattacagacaatatatgccatcatttatcagtaatatctcttagtttg
attgctatagatgtctgattctatttttccacacgtgagtctgcattttc
tatttttgttcattttttaccagtgggaattaaatcatagagagaaagag
aacggggagaggaaaggagccctcatt

tcacctgaggagtaccaaatagcagagaagcacctgaaaaaatgtttaac
atccttaatcatcatggaaatggagactattcttaaagctgttgcctgtc
tgtgggaagtattcttctagctgggttgccttgtctggcctcagtggcat
aagaagtacttaactttgcaaagacttggttaccaggatgagggtatact
cataggggcctctagctaacagaggacaagaggagatggagggtgactgg
gggtggggtacagtgagtaggatgtaaagtcaatatgtaaaaaaaaataa
ttaaaacaaaaagaaatatggatcaatacaagaaagtgaggtatgcagga
ggggaaagaaacacaataagccacagggaggtgtatttatttttgtttac
ctcgaattacatagaacacttataaatatatgcatatgcatacacgtatt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_63010301_63011686
seq2: B6Ng01-209N02.b_46_1022

seq1  GAATTCTTTAATTTTTAAATGGTAAATTATTTAAATAACTGGTACTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATTTTTAAATGGTAAATTATTTAAATAACTGGTACTAATT  50

seq1  TTTTAAAGTCTGAGACTTTAAAATCTCTTAGTAAATTACTAAAATAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGTCTGAGACTTTAAAATCTCTTAGTAAATTACTAAAATAAAAT  100

seq1  GTAAACATGACTGGTAGTTTTTGAGAGAACGATTCTGGTGTGAAAATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACATGACTGGTAGTTTTTGAGAGAACGATTCTGGTGTGAAAATGGA  150

seq1  CATTTGCTAGCCAGCTCATTTAGCTATTCAGGAAGTTGTCATTACCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTAGCCAGCTCATTTAGCTATTCAGGAAGTTGTCATTACCACCT  200

seq1  CTATATAACAATATTCAGCATCAATGTTCTGTAAGTAATAAAACTGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAACAATATTCAGCATCAATGTTCTGTAAGTAATAAAACTGATTG  250

seq1  CTTCTGGTATTTTGGATATGTAAACATTTGAGTTTAAAATTTGATGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTATTTTGGATATGTAAACATTTGAGTTTAAAATTTGATGATCA  300

seq1  GATAAGATCAATTTTGACTGTTTTAACTAAAATTAAAAGGAAAGCCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGATCAATTTTGACTGTTTTAACTAAAATTAAAAGGAAAGCCATAT  350

seq1  ATTATTATTCACAAGAAATAACAGAAAATACATTCCCTTTTGGACGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTCACAAGAAATAACAGAAAATACATTCCCTTTTGGACGGTAA  400

seq1  AATATAATAGAAGTACCAAACATGAACTCATCGTTTTAGATCCATATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATAGAAGTACCAAACATGAACTCATCGTTTTAGATCCATATATT  450

seq1  ATTTTATCCAACAGTTATGCTTCTAGAAATTTGTGTATAAAGGAATACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCCAACAGTTATGCTTCTAGAAATTTGTGTATAAAGGAATACTC  500

seq1  CACAGAAGCAAAATGAATGTATATTTTCTTAGCATGCCTTTACAATTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGCAAAATGAATGTATATTTTCTTAGCATGCCTTTACAATTGTA  550

seq1  CAAAGTTAGAATCCGTAAAATATTTCTTAAGTGTTTTGATAATGTCCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTAGAATCCGTAAAATATTTCTTAAGTGTTTTGATAATGTCCTAT  600

seq1  GCTCTCTAATATAATATATATTGAATATCACAGTAATTTGTGTGTTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTAATATAATATATATTGAATATCACAGTAATTTGTGTGTTGTGG  650

seq1  TTATGGGGAAAATATGCAATCATTATAAAACATTTTGATTCGGCACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGGAAAATATGCAATCATTATAAAACATTTTGATTCGGCACACAT  700

seq1  TTTTAGGGAAGAAATCAAACTATCCATATAATGCTGTCCTGATCTTGTTT  750
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTTAGGGAAGAAATCAGACTATCCATATAATGCTGTCCTGATCTTGTTT  750

seq1  TAATAGAGACCATCTGCATATATGCACGCACAGGAGCATATTTGAAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAGACCATCTGCATATATGCACGCACAGGAGCATATTTGAAATGT  800

seq1  AGATTACAGACAATATATGCCATCATTTATCAGTTAATATCTCTTAGTTT  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGATTACAGACAATATATGCCATCATTTATCAG-TAATATCTCTTAGTTT  849

seq1  GATTGCTATAGATGTCTGATTCTA-TTTTCCACACGTGAGTCTGCATTTT  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GATTGCTATAGATGTCTGATTCTATTTTTCCACACGTGAGTCTGCATTTT  899

seq1  CTA-TTTTGTTCATTTTTTACCAGT-GGAATTAAATCATAGAGAGAAAGA  947
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTATTTTTGTTCATTTTTTACCAGTGGGAATTAAATCATAGAGAGAAAGA  949

seq1  GAA-GGGGAGAGGAAAGGAGC---CACAACAAGAGGGTGGTATATCGCTG  993
      ||| |||||||||||||||||   ||                        
seq2  GAACGGGGAGAGGAAAGGAGCCCTCATT----------------------  977

seq1  CTGCTTGCTGAGGTGTTGACAGCCTCAGGCCTCAGTGCATGACTGGGGAT  1043
                                                        
seq2  --------------------------------------------------  977

seq1  GAGCTTTTGACACCACAAAGACTTTACAGTATTATTCCATTTGGTAAGAT  1093
                                                        
seq2  --------------------------------------------------  977

seq1  GTATAAAGGAAAAAAGATAAAAAGGAAAAAAAATGAAGAATTACCTGTTT  1143
                                                        
seq2  --------------------------------------------------  977

seq1  GGAGAGACCAGCATAAGGATGTGCCTATTTCTCGTGAGGGAGTGACAGAA  1193
                                                        
seq2  --------------------------------------------------  977

seq1  GAAAAAGAGCTCAGAACAATTACAAGGAAGATTTTATAGTTATTTTATCA  1243
                                                        
seq2  --------------------------------------------------  977

seq1  TGAGTAATTGGAGCAAATGCAGGGAAGGCTTAGATATAAGATGACATATG  1293
                                                        
seq2  --------------------------------------------------  977

seq1  CATGTGGAAAATCACATGGACAAATTCTTATTGGTTAAGGATGTCAGCGT  1343
                                                        
seq2  --------------------------------------------------  977

seq1  TTGGGACGCAATTGAGCTGCTCTGATCACTCAAATTTCTCATT  1386
                                                 
seq2  -------------------------------------------  977


seq1: chr2_63174437_63174893
seq2: B6Ng01-209N02.g_66_522 (reverse)

seq1  TAATACGTGTATGCATATGCATATATTTATATGTGTTCTATGTAATTCGA  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAATACGTGTATGCATATGCATATATTTATAAGTGTTCTATGTAATTCGA  50

seq1  GGTAAACAAAAATAAATACACCTCCCTGTGGCTTATTGTGTTTCTTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACAAAAATAAATACACCTCCCTGTGGCTTATTGTGTTTCTTTCCC  100

seq1  CTCCTGCATACCTCACTTTCTTGTATTGATCCATATTTCTTTTTGTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCATACCTCACTTTCTTGTATTGATCCATATTTCTTTTTGTTTTA  150

seq1  ATTATTTTTTTTTACATATTGACTTTACATCCTACTCACTGTACCCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTTTTACATATTGACTTTACATCCTACTCACTGTACCCCACC  200

seq1  CCCAGTCACCCTCCATCTCCTCTTGTCCTCTGTTAGCTAGAGGCCCCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCACCCTCCATCTCCTCTTGTCCTCTGTTAGCTAGAGGCCCCTAT  250

seq1  GAGTATACCCTCATCCTGGTAACCAAGTCTTTGCAAAGTTAAGTACTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATACCCTCATCCTGGTAACCAAGTCTTTGCAAAGTTAAGTACTTCT  300

seq1  TATGCCACTGAGGCCAGACAAGGCAACCCAGCTAGAAGAATACTTCCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACTGAGGCCAGACAAGGCAACCCAGCTAGAAGAATACTTCCCAC  350

seq1  AGACAGGCAACAGCTTTAAGAATAGTCTCCATTTCCATGATGATTAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCAACAGCTTTAAGAATAGTCTCCATTTCCATGATGATTAAGGA  400

seq1  TGTTAAACATTTTTTCAGGTGCTTCTCTGCTATTTGGTACTCCTCAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAACATTTTTTCAGGTGCTTCTCTGCTATTTGGTACTCCTCAGGTG  450

seq1  AGAATTC  457
      |||||||
seq2  AGAATTC  457


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