BAC Information

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BAC

Clone NameB6Ng01-210J13
Chromosome2 (Build37)
Map Location 38,388,813 - 38,515,518
singlet/doubletdoublet
Overlap geneNek6, Psmb7
Upstream geneRabgap1, 6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2
Downstream geneLOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210J13.bB6Ng01-210J13.g
ACCGA028897GA028898
length3151,101
definitionB6Ng01-210J13.b B6Ng01-210J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,515,204 - 38,515,518)(38,388,813 - 38,389,909)
sequence
ctgacactgtggagtggctccccccccacacccccgctcacctaccaatg
aggaaagtaagtccccattcacttaaagcactgtgacagatataaatggg
tggtgtcaagatgtagagccaggtcgactgtgattcaaatatcattttcc
ataatcttgtattgtgtggttctaggcaagcccttctgtgctttgacact
acgtcaggtttttccttcttacatttatttttattttattttattttatt
ttattttattttattgagtgtatggtggaagagtgaaagtgtttcaaaat
gaagggagggaggga
gaattcctctctggagagtgacaaggccctaccattctgttccattctca
acattggcagccagcaaggcttcccctgctgtggataaaggaaggaagga
agggaatctggcccagttcgttcgtcagggacccttatctctgtggtcag
gcagttccgggtatcccagccatgacacacctcccagagaaatcttgagc
aagcacacacatcctgtacgcagactaagcctcacctctcttccctgtga
agtagaagtaacattccggtcatgcccgtgtcaggaagagactgaaaact
aggtaaacttgagggtgtgaatccttcctatacccaatagaggacttggc
ctggtacacagcaaatggcttataaagtcttgctgaatagaaacttgatg
ctgtcagcactaacaccacactgatcctgagtgcctgctgccaggtctcc
ccacaggaattcttttgtgtctctccatgaacatacatgcctccatgagt
ggaggctcgtggggtagccacgagcacaggaaaggagcttcagtctttga
ctgttcacatggcccatctgcgaataccaacacttgtgctctgtaaaaga
acaccagaaggagagagagtccggggagttgacctctgcctctcacatgg
ctagctgtgagcaggtagactcagggccctgtgaatctgagtcacactgg
tttgcagatccagctcccctgctatcactgtggagtctgtccccagcaca
cagctgggtcttcctagcctctgagcctttctttgcacgtgctgtccttc
cttaaaaacccatcctgccctccactcgcagatacttcctgttctgagga
tatactccatagcctcagggccccttctggggtctctgatgagactgagg
tcctgtgtaagttggatggagggtcatcttggcccctgagaggagtagga
aatgcaaggtagtctttcttaatgattatttccatgttgataaaaaccaa
agagcagagccagggggaatttcccgagtgctcaccacaaaattccctct
gcagatttcagcgcttgaagtacaagactcttaggagtgaccactggata
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_38515204_38515518
seq2: B6Ng01-210J13.b_48_362 (reverse)

seq1  TCCCTCCCTCCCTTCATTTTGAAACACTTTCACTCTTCCACCATACACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCCCTTCATTTTGAAACACTTTCACTCTTCCACCATACACTC  50

seq1  AATAAAATAAAATAAAATAAAATAAAATAAAATAAAAATAAATGTAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAAAATAAAATAAAATAAAATAAAATAAAAATAAATGTAAGAA  100

seq1  GGAAAAACCTGACGTAGTGTCAAAGCACAGAAGGGCTTGCCTAGAACCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAACCTGACGTAGTGTCAAAGCACAGAAGGGCTTGCCTAGAACCAC  150

seq1  ACAATACAAGATTATGGAAAATGATATTTGAATCACAGTCGACCTGGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACAAGATTATGGAAAATGATATTTGAATCACAGTCGACCTGGCTC  200

seq1  TACATCTTGACACCACCCATTTATATCTGTCACAGTGCTTTAAGTGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTTGACACCACCCATTTATATCTGTCACAGTGCTTTAAGTGAATG  250

seq1  GGGACTTACTTTCCTCATTGGTAGGTGAGCGGGGGTGTGGGGGGGGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTACTTTCCTCATTGGTAGGTGAGCGGGGGTGTGGGGGGGGAGCC  300

seq1  ACTCCACAGTGTCAG  315
      |||||||||||||||
seq2  ACTCCACAGTGTCAG  315

seq1: chr2_38388813_38389909
seq2: B6Ng01-210J13.g_63_1163

seq1  GAATTCCTCTCTGGAGAGTGACAAGGCCCTACCATTCTGTTCCATTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCTGGAGAGTGACAAGGCCCTACCATTCTGTTCCATTCTCA  50

seq1  ACATTGGCAGCCAGCAAGGCTTCCCCTGCTGTGGATAAAGGAAGGAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGCAGCCAGCAAGGCTTCCCCTGCTGTGGATAAAGGAAGGAAGGA  100

seq1  AGGGAATCTGGCCCAGTTCGTTCGTCAGGGACCCTTATCTCTGTGGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATCTGGCCCAGTTCGTTCGTCAGGGACCCTTATCTCTGTGGTCAG  150

seq1  GCAGTTCCGGGTATCCCAGCCATGACACACCTCCCAGAGAAATCTTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCCGGGTATCCCAGCCATGACACACCTCCCAGAGAAATCTTGAGC  200

seq1  AAGCACACACATCCTGTACGCAGACTAAGCCTCACCTCTCTTCCCTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACACATCCTGTACGCAGACTAAGCCTCACCTCTCTTCCCTGTGA  250

seq1  AGTAGAAGTAACATTCCGGTCATGCCCGTGTCAGGAAGAGACTGAAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAGTAACATTCCGGTCATGCCCGTGTCAGGAAGAGACTGAAAACT  300

seq1  AGGTAAACTTGAGGGTGTGAATCCTTCCTATACCCAATAGAGGACTTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAACTTGAGGGTGTGAATCCTTCCTATACCCAATAGAGGACTTGGC  350

seq1  CTGGTACACAGCAAATGGCTTATAAAGTCTTGCTGAATAGAAACTTGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACACAGCAAATGGCTTATAAAGTCTTGCTGAATAGAAACTTGATG  400

seq1  CTGTCAGCACTAACACCACACTGATCCTGAGTGCCTGCTGCCAGGTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCACTAACACCACACTGATCCTGAGTGCCTGCTGCCAGGTCTCC  450

seq1  CCACAGGAATTCTTTTGTGTCTCTCCATGAACATACATGCCTCCATGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGAATTCTTTTGTGTCTCTCCATGAACATACATGCCTCCATGAGT  500

seq1  GGAGGCTCGTGGGGTAGCCACGAGCACAGGAAAGGAGCTTCAGTCTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTCGTGGGGTAGCCACGAGCACAGGAAAGGAGCTTCAGTCTTTGA  550

seq1  CTGTTCACATGGCCCATCTGCGAATACCAACACTTGTGCTCTGTAAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCACATGGCCCATCTGCGAATACCAACACTTGTGCTCTGTAAAAGA  600

seq1  ACACCAGAAGGAGAGAGAGTCCGGGGAGTTGACCTCTGCCTCTCACATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGAAGGAGAGAGAGTCCGGGGAGTTGACCTCTGCCTCTCACATGG  650

seq1  CTAGCTGTGAGCAGGTAGACTCAGGGCCCTGTGAATCTGAGTCACACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGTGAGCAGGTAGACTCAGGGCCCTGTGAATCTGAGTCACACTGG  700

seq1  TTTGCAGATCCAGCTCCCCTGCTATCACTGTGGAGTCTGTCCCCAGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGATCCAGCTCCCCTGCTATCACTGTGGAGTCTGTCCCCAGCACA  750

seq1  CAGCTGGGTCTTCCTAGCCTCTGAGCCTTTCTTTGCACGTGCTGTCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGTCTTCCTAGCCTCTGAGCCTTTCTTTGCACGTGCTGTCCTTC  800

seq1  CTTAAAAACCCATCCTGCCCTCCACTCGCAGATACTTCCTGTTCTGAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAACCCATCCTGCCCTCCACTCGCAGATACTTCCTGTTCTGAGGA  850

seq1  TATACTCCATAGCCTCAGGGCCCCTTCTGGGGTCTCTGATGAGACTGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCCATAGCCTCAGGGCCCCTTCTGGGGTCTCTGATGAGACTGAGG  900

seq1  TCCTGTGTAAG-TGGATGGAGGGTCATCTTGGCCCCTGAGAGGAGTAGGA  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTAAGTTGGATGGAGGGTCATCTTGGCCCCTGAGAGGAGTAGGA  950

seq1  AATGC-AGGTAGTCTTTCTTAATGATTA-TTCCATGTTGATAAAA--CCA  995
      ||||| |||||||||||||||||||||| ||||||||||||||||  | |
seq2  AATGCAAGGTAGTCTTTCTTAATGATTATTTCCATGTTGATAAAAACCAA  1000

seq1  AGAGCAGAGCCA-GGGGAATTTCCCGAGTGCTCACCACAAAATTCCCTCT  1044
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGAGCCAGGGGGAATTTCCCGAGTGCTCACCACAAAATTCCCTCT  1050

seq1  GCAGATTTCAGCGCCTGAGGTACAGGACACCTAGGAAGGTGACCACTGGA  1094
      |||||||||||||| ||| ||||| ||| | |||||  ||||||||||||
seq2  GCAGATTTCAGCGCTTGAAGTACAAGACTCTTAGGA--GTGACCACTGGA  1098

seq1  TAG  1097
      |||
seq2  TAG  1101