BAC Information

Click to search

BAC

Clone NameB6Ng01-214E10
Chromosome2 (Build37)
Map Location 74,324,079 - 74,459,791
singlet/doubletdoublet
Overlap geneLnp, LOC100040519
Upstream geneWipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
Downstream geneEvx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214E10.bB6Ng01-214E10.g
ACCGA031568GA031569
length1,2011,125
definitionB6Ng01-214E10.b B6Ng01-214E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,458,571 - 74,459,791)(74,324,079 - 74,325,225)
sequence
gaattccaatggagcctagcttcagtctcaatccaggaagaggagaacca
cattatctttggcaggtcctatagaaaaaaaaatactttaaaaagttgtc
ctggaatttttttaaacacttttaaggtctttgttatttattttgcagct
ttgcagggctggagttggaactctcaatgtgaagaatttagacatagcct
aaatggtagaacaaagatgtttttgttttgaaacaaggtctcaatgtata
gccctggcttgtgcataactcattatgtatatagaccgtgtgattttgac
tccctgcttcttgaaagttattttagaataattttacttttgtattttta
aagttttcttatctttaaggcattaattccacaagacattattgtgagat
tttcatctaaactaccaggcaaacaagttagtaacagtaattcagatctg
ctgtagtgttttgaaacaagacttttaaagcaaaacacacagatgaaagt
gtggcagagtaaaaagttagctgatgctgcctctacctacattccacact
gtccaggaggaagacacagacagacatgggctcaaatttttactttgtcc
gtctgtcctttttacttttttttttttcattttatttttgtgtgcatttg
tgttttgtttgcaagtatgccggtgtgaaggtatcagatcctggaactgg
aattacagagctgccattggcaattaaacctgggtcctctggaagagcag
ccagtgctctgaactgtgagccatatctccagctctgatttttcttttta
gaatttaattgctaagaattctatgtacttgaattttaaaaagacaatat
aatactaatactcactgacttagcttcattgagaaactagagactccaaa
caagatgtgggttatttcaatggtgagtctgtctgttaaactgcagtact
tggtcagacatctccctcctttgactgcatttcttctacatttaacagct
cacagggattattattgtgtctatttcatgagaagttctttgccctgctc
ttgaatgtacagagcaccgttctagtacaaagcacagcgatgctagcaga
gtctgcacgtaggaaggaaatggtgaacttcagatccgctgcgaaagagt
caagctgactgctacgcatcgaaggctgctctgtttagaaaggcaaggat
a
gaattcaagatgtgggaccataaatactgacgatcaaatgggttttctat
ggcagtaaaacaactcatgttctatagtgtaagctcctccctctgtttca
ctatctgcttctaccaaagtaaagaaatacccgagctcgttttgtgagtt
ctgtcattaaaggaaaggtcgttggcaatcagtgctgtgccctccagaaa
actttcacagcgagcagtaaaagagtgaggctgcccgacccagacagttt
tcacctacagagccatacctgcggtggtttctggtgacccttttgttgct
gaggctggggaagggaacaagagagacagctcctgctacctctggttccc
aatgttatttttgcataaatgggttttatccaaagcatttcaggagtgtt
gatgcctgggcactgattcctgagaaaggagggagccgaaagggagggcc
gtgactgtgcctgaaaaccatttcaaactgtgttacaagccagccccgcc
acacagagggcccctattcggctctctacatggttctgaagtctcttcaa
agcactcaattaaaaaatgttgcttctataaaactcagggcagactatta
tggcacaaacagctgccatgtgattagaaacacaggaaatggtctgaaga
tgcttggtgctctaaatctcttcctctgcatcccacgtatggtacccagg
aaacgatgcagcctgttaacttgtgttgtggattttgatttcaaaatgcc
attttgaatgatatgcactacaatgaaagatatgcactacagcaatgtct
gacctgcagaaaactgtagagcgcgaccagactcaagagcttagcgctca
cttcgttcacatggtgctttacagtgtgttttgtagcatatgcttcttaa
tccttgaagacatatttcagacaatgtacctaacacttgaaattttgatt
tttttcataacattggtctgtagacatttcacatatactgatgcacacca
taccacagtatcgtcccagaaatgattctgtgataatactgatgctctga
ggcagctctccagcactgggcgagggagagtagtgccgattgctagtgaa
cacaaaataattttagattcttact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_74458571_74459791
seq2: B6Ng01-214E10.b_45_1245 (reverse)

seq1  TATCCTTGCCTTCCTATAAAACAGAGCAGACCTTTCTGGGCTGCTGTTAG  50
      |||||||||||| ||   ||||||||||| ||||     | |||   |||
seq2  TATCCTTGCCTTTCT---AAACAGAGCAG-CCTT----CGATGC--GTAG  40

seq1  CAGTCAGCCTTGGACTCCTCTCGCAGCGGATCTGAGGTTCAACCATCTCC  100
      ||||||||  | |||| || ||||||||||||||| |||| ||||| |||
seq2  CAGTCAGC--TTGACT-CTTTCGCAGCGGATCTGAAGTTC-ACCATTTCC  86

seq1  TTCCCTTCCGGTCGCAGACTCTTGCTAGCCTTCCGCTGTGCTTTGTACTA  150
      ||||  | ||   |||||||| ||||||| |  |||||||||||||||| 
seq2  TTCC--TACG--TGCAGACTC-TGCTAGCAT--CGCTGTGCTTTGTACT-  128

seq1  AGAACGGTGCTCTTGTACATTCAAGAGCAGGGCAAAGAAC-TCTCATGAA  199
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  AGAACGGTGCTC-TGTACATTCAAGAGCAGGGCAAAGAACTTCTCATGAA  177

seq1  ATAGACAACATAAT-ATCCCTGTGAGCTG-TAAATGTAGAAGAAATGCAG  247
      |||||||  ||||| |||||||||||||| ||||||||||||||||||||
seq2  ATAGACACAATAATAATCCCTGTGAGCTGTTAAATGTAGAAGAAATGCAG  227

seq1  TCAAAGGAGGGAGATGTCTGACCAAGTACTGCAGTTTAACAGACAGACTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAGGGAGATGTCTGACCAAGTACTGCAGTTTAACAGACAGACTC  277

seq1  ACCATTGAAATAACCCACATCTTGTTTGGAGTCTCTAGTTTCTCAATGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGAAATAACCCACATCTTGTTTGGAGTCTCTAGTTTCTCAATGAA  327

seq1  GCTAAGTCAGTGAGTATTAGTATTATATTGTCTTTTTAAAATTCAAGTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTCAGTGAGTATTAGTATTATATTGTCTTTTTAAAATTCAAGTAC  377

seq1  ATAGAATTCTTAGCAATTAAATTCTAAAAAGAAAAATCAGAGCTGGAGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTCTTAGCAATTAAATTCTAAAAAGAAAAATCAGAGCTGGAGAT  427

seq1  ATGGCTCACAGTTCAGAGCACTGGCTGCTCTTCCAGAGGACCCAGGTTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCACAGTTCAGAGCACTGGCTGCTCTTCCAGAGGACCCAGGTTTA  477

seq1  ATTGCCAATGGCAGCTCTGTAATTCCAGTTCCAGGATCTGATACCTTCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAATGGCAGCTCTGTAATTCCAGTTCCAGGATCTGATACCTTCAC  527

seq1  ACCGGCATACTTGCAAACAAAACACAAATGCACACAAAAATAAAATGAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGCATACTTGCAAACAAAACACAAATGCACACAAAAATAAAATGAAA  577

seq1  AAAAAAAAAGTAAAAAGGACAGACGGACAAAGTAAAAATTTGAGCCCATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGTAAAAAGGACAGACGGACAAAGTAAAAATTTGAGCCCATG  627

seq1  TCTGTCTGTGTCTTCCTCCTGGACAGTGTGGAATGTAGGTAGAGGCAGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTGTCTTCCTCCTGGACAGTGTGGAATGTAGGTAGAGGCAGCA  677

seq1  TCAGCTAACTTTTTACTCTGCCACACTTTCATCTGTGTGTTTTGCTTTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAACTTTTTACTCTGCCACACTTTCATCTGTGTGTTTTGCTTTAA  727

seq1  AAGTCTTGTTTCAAAACACTACAGCAGATCTGAATTACTGTTACTAACTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGTTTCAAAACACTACAGCAGATCTGAATTACTGTTACTAACTT  777

seq1  GTTTGCCTGGTAGTTTAGATGAAAATCTCACAATAATGTCTTGTGGAATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCTGGTAGTTTAGATGAAAATCTCACAATAATGTCTTGTGGAATT  827

seq1  AATGCCTTAAAGATAAGAAAACTTTAAAAATACAAAAGTAAAATTATTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTAAAGATAAGAAAACTTTAAAAATACAAAAGTAAAATTATTCT  877

seq1  AAAATAACTTTCAAGAAGCAGGGAGTCAAAATCACACGGTCTATATACAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACTTTCAAGAAGCAGGGAGTCAAAATCACACGGTCTATATACAT  927

seq1  AATGAGTTATGCACAAGCCAGGGCTATACATTGAGACCTTGTTTCAAAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTTATGCACAAGCCAGGGCTATACATTGAGACCTTGTTTCAAAAC  977

seq1  AAAAACATCTTTGTTCTACCATTTAGGCTATGTCTAAATTCTTCACATTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATCTTTGTTCTACCATTTAGGCTATGTCTAAATTCTTCACATTG  1027

seq1  AGAGTTCCAACTCCAGCCCTGCAAAGCTGCAAAATAAATAACAAAGACCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCCAACTCCAGCCCTGCAAAGCTGCAAAATAAATAACAAAGACCT  1077

seq1  TAAAAGTGTTTAAAAAAATTCCAGGACAACTTTTTAAAGTATTTTTTTTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGTTTAAAAAAATTCCAGGACAACTTTTTAAAGTATTTTTTTTT  1127

seq1  CTATAGGACCTGCCAAAGATAATGTGGTTCTCCTCTTCCTGGATTGAGAC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGACCTGCCAAAGATAATGTGGTTCTCCTCTTCCTGGATTGAGAC  1177

seq1  TGAAGCTAGGCTCCATTGGAATTC  1221
      ||||||||||||||||||||||||
seq2  TGAAGCTAGGCTCCATTGGAATTC  1201

seq1: chr2_74324079_74325225
seq2: B6Ng01-214E10.g_63_1187

seq1  GAATTCAAGATGTGGGACCATAAATACTGACGATCAAATGGGTTTTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATGTGGGACCATAAATACTGACGATCAAATGGGTTTTCTAT  50

seq1  GGCAGTAAAACAACTCATGTTCTATAGTGTAAGCTCCTCCCTCTGTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTAAAACAACTCATGTTCTATAGTGTAAGCTCCTCCCTCTGTTTCA  100

seq1  CTATCTGCTTCTACCAAAGTAAAGAAATACCCGAGCTCGTTTTGTGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGCTTCTACCAAAGTAAAGAAATACCCGAGCTCGTTTTGTGAGTT  150

seq1  CTGTCATTAAAGGAAAGGTCGTTGGCAATCAGTGCTGTGCCCTCCAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTAAAGGAAAGGTCGTTGGCAATCAGTGCTGTGCCCTCCAGAAA  200

seq1  ACTTTCACAGCGAGCAGTAAAAGAGTGAGGCTGCCCGACCCAGACAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCACAGCGAGCAGTAAAAGAGTGAGGCTGCCCGACCCAGACAGTTT  250

seq1  TCACCTACAGAGCCATACCTGCGGTGGTTTCTGGTGACCCTTTTGTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTACAGAGCCATACCTGCGGTGGTTTCTGGTGACCCTTTTGTTGCT  300

seq1  GAGGCTGGGGAAGGGAACAAGAGAGACAGCTCCTGCTACCTCTGGTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGGGAAGGGAACAAGAGAGACAGCTCCTGCTACCTCTGGTTCCC  350

seq1  AATGTTATTTTTGCATAAATGGGTTTTATCCAAAGCATTTCAGGAGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATTTTTGCATAAATGGGTTTTATCCAAAGCATTTCAGGAGTGTT  400

seq1  GATGCCTGGGCACTGATTCCTGAGAAAGGAGGGAGCCGAAAGGGAGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTGGGCACTGATTCCTGAGAAAGGAGGGAGCCGAAAGGGAGGGCC  450

seq1  GTGACTGTGCCTGAAAACCATTTCAAACTGTGTTACAAGCCAGCCCCGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGTGCCTGAAAACCATTTCAAACTGTGTTACAAGCCAGCCCCGCC  500

seq1  ACACAGAGGGCCCCTATTCGGCTCTCTACATGGTTCTGAAGTCTCTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGGGCCCCTATTCGGCTCTCTACATGGTTCTGAAGTCTCTTCAA  550

seq1  AGCACTCAATTAAAAAATGTTGCTTCTATAAAACTCAGGGCAGACTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCAATTAAAAAATGTTGCTTCTATAAAACTCAGGGCAGACTATTA  600

seq1  TGGCACAAACAGCTGCCATGTGATTAGAAACACAGGAAATGGTCTGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAAACAGCTGCCATGTGATTAGAAACACAGGAAATGGTCTGAAGA  650

seq1  TGCTTGGTGCTCTAAATCTCTTCCTCTGCATCCCACGTATGGTACCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGTGCTCTAAATCTCTTCCTCTGCATCCCACGTATGGTACCCAGG  700

seq1  AAACGATGCAGCCTGTTAACTTGTGTTGTGGATTTTGATTTCAAAATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGATGCAGCCTGTTAACTTGTGTTGTGGATTTTGATTTCAAAATGCC  750

seq1  ATTTTGAATGATATGCACTACAATGAAAGATATGCACTACAGCAATGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAATGATATGCACTACAATGAAAGATATGCACTACAGCAATGTCT  800

seq1  GACCTGCAGAAAACTGTAGAGCGCGACCAGACTCAAGAGCTTAGCGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCAGAAAACTGTAGAGCGCGACCAGACTCAAGAGCTTAGCGCTCA  850

seq1  CTTCGTTCACATGGTGCTTTACAGTGTGTTTTGTAGCATATGCTTCTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTTCACATGGTGCTTTACAGTGTGTTTTGTAGCATATGCTTCTTAA  900

seq1  TCCTTGAAGACATATTTCAGACAATGTACCTAACACTTGAAATTTTGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAAGACATATTTCAGACAATGTACCTAACACTTGAAATTTTGATT  950

seq1  TTTTTCATAACATTGGTCTGTAGACATTTCACAATATTACTGATGCAACA  1000
      |||||||||||||||||||||||||||||||| ||| ||||||||| |||
seq2  TTTTTCATAACATTGGTCTGTAGACATTTCAC-ATA-TACTGATGC-ACA  997

seq1  CCATTAACCCACAGTATCGTCCCAGGAAATGATTCTGTGATAAATAACTG  1050
      ||||    |||||||||||||||| ||||||||||||||||||   ||||
seq2  CCAT---ACCACAGTATCGTCCCA-GAAATGATTCTGTGATAA--TACTG  1041

seq1  ATTGCCTCCTGAGGGCAGCTCTCCAGCACT-GGCGAGGGAAGAGTAAGTG  1099
      | |||   |||| ||||||||||||||||| |||||||| ||||| ||||
seq2  A-TGC--TCTGA-GGCAGCTCTCCAGCACTGGGCGAGGG-AGAGT-AGTG  1085

seq1  CCGATTTGGCTTAGTTGAAACACAAAATAATTGTTAGGAATTCTTACT  1147
      ||||||  || ||||   |||||||||||||| ||||  |||||||||
seq2  CCGATT--GC-TAGT--GAACACAAAATAATT-TTAG--ATTCTTACT  1125