BAC Information

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BAC

Clone NameB6Ng01-214E20
Chromosome2 (Build37)
Map Location 178,522,012 - 178,646,425
singlet/doubletdoublet
Overlap geneLOC100039368
Upstream geneLOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26
Downstream geneLOC665264, LOC100043168, LOC100039413, Cdh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214E20.bB6Ng01-214E20.g
ACCGA031586GA031587
length1,193291
definitionB6Ng01-214E20.b B6Ng01-214E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,645,237 - 178,646,425)(178,522,012 - 178,522,302)
sequence
gaattctctaatgcaaaaggattgaagtggggagccatgttcactgatgc
tgtaatctgacaggaggagttttgacatttcaggggcctgattcatgaac
atgcatgggctgtagtggtaaggctggcaaacacctttacaaagaaagac
atgggcaagtagacatggaggtttgccttgtgcagcctccctggacgtgg
ccaccctaaaagccagggccttgggtattctgggatatgactttcctttc
caaatcccaccaagatcccatcttgaatgcttttcttttgacttgaaatt
tggtggaattagcttccattatttcacagtttctcccaacagtccccaac
aaagtgaatcaagacactgacctcctaagttactgtcacagaactcctaa
acctggtggcctaaagagcagaaatgtgttgtctgacacattggaaggtt
ggaagtacaagatcaccttcaataggactggtttctcttcctcctcttcc
tcctcttcctcctcttcctcctcttcctcctcttcctcctcttcctcctc
ttcctcctcttcctcctctccctcctctccctcctcttcctctccttcca
ccttcctccctcccttcctcctctctcttttctccttctccttccttcct
ctctccctcctgcctccctcctttctcagtcctccttatacctctcctcc
tcctctggctccactttcttctcctctttaccctcttctttcttcttttc
tgttattcacatgctctcactgtgtacattccaggctttcttccacttcc
cttccatccagcctcagcatccgactgctgggttttcttgtgaatgccac
atagccaggaaggcccagccttctgaggcatctcctgaactgcagatggc
tgagttccctctgtcttttcaggaacacctgttggtggcacaatgtccac
ttttaataaagaccgcagacacgatagaataggggcccccaaggtgaccc
tgctgaatctgtaccacactatcaaggtttcagctctgcaattctgaagg
gcttgtggggtgaacttggtgcttatttgtttttaacaattgaagttcca
tgaagtcagagaagacgtcctccggcttgccagtttgtacatacctgcct
tggcaaactgtcagacaagctgcatcctaagaacccacccctg

caccgcacttaggtttggagcctgaaggaagagctgggaactagaacatg
ggagcaaggtgtcagctgagagaaaggatacaagggaagattcctgttat
gactgatgctgtttctctcaggtggaaggcacagcttaggttctatgaag
gcgaacctgggatgtctttaccacctgaccatgagtccctacctcaaatg
tttggacaggcttgactcatgcagcatcagcagtggaggtgaggggggac
agtgggggcagtgacagtaggagaggaggggcggggcgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_178645237_178646425
seq2: B6Ng01-214E20.b_40_1232 (reverse)

seq1  CAGGGGTGGG-TCTTAGCACTGCAGCCTCGTCTG-CAGTTGCCCA--GCA  46
      |||||||||| |||||| | ||||| || ||||| |||||  |||  |||
seq2  CAGGGGTGGGTTCTTAGGA-TGCAG-CTTGTCTGACAGTTTGCCAAGGCA  48

seq1  GCTATGTACAAACTGGC-AGCCCGAGGACGTCCTCCTCTGACTTCATTGG  95
      | ||||||||||||||| |||| |||||||| || |||||||||||| | 
seq2  GGTATGTACAAACTGGCAAGCCGGAGGACGT-CTTCTCTGACTTCATGGA  97

seq1  ACTTTCATTGGT-AAAACAAATATGCA-CAAGTTCCAACCCCAC-AGCCC  142
      ||||  |||| | |||||||||| ||| |||||||  ||||||| |||||
seq2  ACTTCAATTGTTAAAAACAAATAAGCACCAAGTTC--ACCCCACAAGCCC  145

seq1  CTCAGAA-TGCAGAGCTGAAACCTTGATAGTGTGGTACAGATTCAGCAGG  191
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATTGCAGAGCTGAAACCTTGATAGTGTGGTACAGATTCAGCAGG  195

seq1  GTCACCTTGGGGGCCCCTATTCTATCGTGTCTGCGGTCTTTATTAAAAGT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTTGGGGGCCCCTATTCTATCGTGTCTGCGGTCTTTATTAAAAGT  245

seq1  GGACATTGTGCCACCAACAGGTGTTCCTGAAAAGACAGAGGGAACTCAGC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTGTGCCACCAACAGGTGTTCCTGAAAAGACAGAGGGAACTCAGC  295

seq1  CATCTGCAGTTCAGGAGATGCCTCAGAAGGCTGGGCCTTCCTGGCTATGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCAGTTCAGGAGATGCCTCAGAAGGCTGGGCCTTCCTGGCTATGT  345

seq1  GGCATTCACAAGAAAACCCAGCAGTCGGATGCTGAGGCTGGATGGAAGGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCACAAGAAAACCCAGCAGTCGGATGCTGAGGCTGGATGGAAGGG  395

seq1  AAGTGGAAGAAAGCCTGGAATGTACACAGTGAGAGCATGTGAATAACAGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAAGAAAGCCTGGAATGTACACAGTGAGAGCATGTGAATAACAGA  445

seq1  AAAGAAGAAAGAAGAGGGTAAAGAGGAGAAGAAAGTGGAGCCAGAGGAGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAAGAAGAGGGTAAAGAGGAGAAGAAAGTGGAGCCAGAGGAGG  495

seq1  AGGAGAGGTATAAGGAGGACTGAGAAAGGAGGGAGGCAGGAGGGAGAGAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGTATAAGGAGGACTGAGAAAGGAGGGAGGCAGGAGGGAGAGAG  545

seq1  GAAGGAAGGAGAAGGAGAAAAGAGAGAGGAGGAAGGGAGGGAGGAAGGTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAGAAGGAGAAAAGAGAGAGGAGGAAGGGAGGGAGGAAGGTG  595

seq1  GAAGGAGAGGAAGAGGAGGGAGAGGAGGGAGAGGAGGAAGAGGAGGAAGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGAGGAAGAGGAGGGAGAGGAGGGAGAGGAGGAAGAGGAGGAAGA  645

seq1  GGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGG  695

seq1  AAGAGGAGGAAGAGAAACCAGTCCTATTGAAGGTGATCTTGTACTTCCAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGGAAGAGAAACCAGTCCTATTGAAGGTGATCTTGTACTTCCAA  745

seq1  CCTTCCAATGTGTCAGACAACACATTTCTGCTCTTTAGGCCACCAGGTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAATGTGTCAGACAACACATTTCTGCTCTTTAGGCCACCAGGTTT  795

seq1  AGGAGTTCTGTGACAGTAACTTAGGAGGTCAGTGTCTTGATTCACTTTGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTCTGTGACAGTAACTTAGGAGGTCAGTGTCTTGATTCACTTTGT  845

seq1  TGGGGACTGTTGGGAGAAACTGTGAAATAATGGAAGCTAATTCCACCAAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACTGTTGGGAGAAACTGTGAAATAATGGAAGCTAATTCCACCAAA  895

seq1  TTTCAAGTCAAAAGAAAAGCATTCAAGATGGGATCTTGGTGGGATTTGGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTCAAAAGAAAAGCATTCAAGATGGGATCTTGGTGGGATTTGGA  945

seq1  AAGGAAAGTCATATCCCAGAATACCCAAGGCCCTGGCTTTTAGGGTGGCC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGTCATATCCCAGAATACCCAAGGCCCTGGCTTTTAGGGTGGCC  995

seq1  ACGTCCAGGGAGGCTGCACAAGGCAAACCTCCATGTCTACTTGCCCATGT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCAGGGAGGCTGCACAAGGCAAACCTCCATGTCTACTTGCCCATGT  1045

seq1  CTTTCTTTGTAAAGGTGTTTGCCAGCCTTACCACTACAGCCCATGCATGT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTGTAAAGGTGTTTGCCAGCCTTACCACTACAGCCCATGCATGT  1095

seq1  TCATGAATCAGGCCCCTGAAATGTCAAAACTCCTCCTGTCAGATTACAGC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATCAGGCCCCTGAAATGTCAAAACTCCTCCTGTCAGATTACAGC  1145

seq1  ATCAGTGAACATGGCTCCCCACTTCAATCCTTTTGCATTAGAGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGAACATGGCTCCCCACTTCAATCCTTTTGCATTAGAGAATTC  1193


seq1: chr2_178522012_178522302
seq2: B6Ng01-214E20.g_71_361

seq1  CACCGCACTTAGGTTTGGAGCCTGAAGGAAGAGCTGGGAACTAGAACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCACTTAGGTTTGGAGCCTGAAGGAAGAGCTGGGAACTAGAACATG  50

seq1  GGAGCAAGGTGTCAGCTGAGAGAAAGGATACAAGGGAAGATTCCTGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAGGTGTCAGCTGAGAGAAAGGATACAAGGGAAGATTCCTGTTAT  100

seq1  GACTGATGCTGTTTCTCTCAGGTGGAAGGCACAGCTTAGGTTCTATGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATGCTGTTTCTCTCAGGTGGAAGGCACAGCTTAGGTTCTATGAAG  150

seq1  GCGAACCTGGGATGTCTTTACCACCTGACCATGAGTCCCTACCTCAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAACCTGGGATGTCTTTACCACCTGACCATGAGTCCCTACCTCAAATG  200

seq1  TTTGGACAGGCTTGACTCATGCAGCATCAGCAGTGGAGGTGAGGGGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACAGGCTTGACTCATGCAGCATCAGCAGTGGAGGTGAGGGGGGAC  250

seq1  AGTGGGGGCAGTGACAGTAGGAGAGGAGGGGCGGGGCGGGG  291
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGGCAGTGACAGTAGGAGAGGAGGGGCGGGGCGGGG  291


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