BAC Information

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BAC

Clone NameB6Ng01-215K13
Chromosome2 (Build37)
Map Location 160,916,239 - 161,097,305
singlet/doubletdoublet
Overlap geneChd6, LOC100043693, LOC100043694, LOC383769
Upstream geneGm826, Mafb, LOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3
Downstream geneLOC629655, LOC383770, Ptprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215K13.bB6Ng01-215K13.g
ACCGA032557GA032558
length3461,116
definitionB6Ng01-215K13.b B6Ng01-215K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,096,960 - 161,097,305)(160,916,239 - 160,917,336)
sequence
agggcagatgcttgcagaaggacattagatcctgtagttaaaagtggttt
caaactacccagtgggggaggagctagtaacagaacttggatcttctaca
agagcaactagctatcctaactgagaagccctctctccagcccctgggta
gaaacttttaaatgcacaaaaatgtaccaatgtctgtgtttttgttaagc
tgttgtttggagttgtgtgagatcttgcttctggattattatggctctga
atcttcccatgttatcttttgtaactcagtgtgaatttgccatgaaatgg
agttttctgaaaaagtcatggggtgcggggagggtgggtgttgttg
gaattcaaggccagactggaaacactgaaagaagactcaaaaaaaaagaa
agaaagaaagaaagaaagaaagaaaagaaaagaaaagaaaagaaaagaaa
agaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaa
agaaaagaaaagaggcaaaacaaacaaaatcccaataatatcaaggtggc
atcaagatcaggtggatacctacaatttgttccatggaaattggaacaga
agtgattccactttggctagaatgtagctcaatcattttaaagaatactg
aaaagtaaggtcatccctagagtcagcatccagttgcaaagtcctaattc
caagtggtatctatgtatggttctctaggaaaatgcaggaaaacccagtg
agggtcaagcaggagcaactgtgacagtcaaggctcacgacagctgcttc
tgtggtaactgtggccataaacaagctgttacctcctggtgtctgagctc
cttccctgagaaaatggaggtagaaacaaaacctgtactctaacatgctt
agtgctggtatcctcaagcacttggaaaaaaaaaggtttgctctttattt
tacgactctgggatgggaaatgaaggccttggttttatctggttctacgc
ctgcctttctggcactggggccagacccagcccgtctttctacaactgga
cttcttgttgcacaaccgagttctcctggcatgctctagggaaggttttt
ttttcctcccaataaaacacctcttctatggacccactttttttctcttt
ctcttaaatgaaaacatttattatttttctttatatcattccctcagttg
tcctctctcttgtcaacagaacaaggacaacgtatagttgtaataatgat
ggcaaattcagccttatatacagtcctgtgatggccaatcttgacttcca
gcttgactggcgattggtggcaatacatttcctccggtgtctctattaag
gagtcttgaagattgagaagaactcctatgaaagctctgatgtaactacc
tggataaatcccttgaatggatttgtaaacccatgggcattatctgccag
ttgatataaaagtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_161096960_161097305
seq2: B6Ng01-215K13.b_54_399 (reverse)

seq1  CAACAACACCCACCCTCCCCGCACCCCATGACTTTTTCAGAAAACTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACACCCACCCTCCCCGCACCCCATGACTTTTTCAGAAAACTCCAT  50

seq1  TTCATGGCAAATTCACACTGAGTTACAAAAGATAACATGGGAAGATTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGCAAATTCACACTGAGTTACAAAAGATAACATGGGAAGATTCAG  100

seq1  AGCCATAATAATCCAGAAGCAAGATCTCACACAACTCCAAACAACAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAATAATCCAGAAGCAAGATCTCACACAACTCCAAACAACAGCTT  150

seq1  AACAAAAACACAGACATTGGTACATTTTTGTGCATTTAAAAGTTTCTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACACAGACATTGGTACATTTTTGTGCATTTAAAAGTTTCTACC  200

seq1  CAGGGGCTGGAGAGAGGGCTTCTCAGTTAGGATAGCTAGTTGCTCTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCTGGAGAGAGGGCTTCTCAGTTAGGATAGCTAGTTGCTCTTGTA  250

seq1  GAAGATCCAAGTTCTGTTACTAGCTCCTCCCCCACTGGGTAGTTTGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCCAAGTTCTGTTACTAGCTCCTCCCCCACTGGGTAGTTTGAAAC  300

seq1  CACTTTTAACTACAGGATCTAATGTCCTTCTGCAAGCATCTGCCCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTAACTACAGGATCTAATGTCCTTCTGCAAGCATCTGCCCT  346

seq1: chr2_160916239_160917336
seq2: B6Ng01-215K13.g_69_1184

seq1  GAATTCAAGGCCAGACTGGAAACACTGAAAGAAGACTCAAAAAAAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGACTGGAAACACTGAAAGAAGACTCAAAAAAAAAGAA  50

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA  100

seq1  AGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA  150

seq1  AGAAAAGAAAAGAGGCAAAACAAACAAAATCCCAATAATATCAAGGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAAGAGGCAAAACAAACAAAATCCCAATAATATCAAGGTGGC  200

seq1  ATCAAGATCAGGTGGATACCTACAATTTGTTCCATGGAAATTGGAACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGATCAGGTGGATACCTACAATTTGTTCCATGGAAATTGGAACAGA  250

seq1  AGTGATTCCACTTTGGCTAGAATGTAGCTCAATCATTTTAAAGAATACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTCCACTTTGGCTAGAATGTAGCTCAATCATTTTAAAGAATACTG  300

seq1  AAAAGTAAGGTCATCCCTAGAGTCAGCATCCAGTTGCAAAGTCCTAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAGGTCATCCCTAGAGTCAGCATCCAGTTGCAAAGTCCTAATTC  350

seq1  CAAGTGGTATCTATGTATGGTTCTCTAGGAAAATGCAGGAAAACCCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGTATCTATGTATGGTTCTCTAGGAAAATGCAGGAAAACCCAGTG  400

seq1  AGGGTCAAGCAGGAGCAACTGTGACAGTCAAGGCTCACGACAGCTGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCAAGCAGGAGCAACTGTGACAGTCAAGGCTCACGACAGCTGCTTC  450

seq1  TGTGGTAACTGTGGCCATAAACAAGCTGTTACCTCCTGGTGTCTGAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTAACTGTGGCCATAAACAAGCTGTTACCTCCTGGTGTCTGAGCTC  500

seq1  CTTCCCTGAGAAAATGGAGGTAGAAACAAAACCTGTACTCTAACATGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGAGAAAATGGAGGTAGAAACAAAACCTGTACTCTAACATGCTT  550

seq1  AGTGCTGGTATCCTCAAGCACTTGGAAAAAAAAAGGTTTGCTCTTTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGTATCCTCAAGCACTTGGAAAAAAAAAGGTTTGCTCTTTATTT  600

seq1  TACGACTCTGGGATGGGAAATGAAGGCCTTGGTTTTATCTGGTTCTACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGACTCTGGGATGGGAAATGAAGGCCTTGGTTTTATCTGGTTCTACGC  650

seq1  CTGCCTTTCTGGCACTGGGGCCAGACCCAGCCCGTCTTTCTACAACTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTCTGGCACTGGGGCCAGACCCAGCCCGTCTTTCTACAACTGGA  700

seq1  CTTCTTGTTGCACAACCGAGTTCTCCTGGCATGCTCTAGGGAAGGTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTTGCACAACCGAGTTCTCCTGGCATGCTCTAGGGAAGGTTTTT  750

seq1  TTTTCCTCCCAATAAAACACCTCTTCTATGGACCCACTTTTTT--CCATT  798
      |||||||||||||||||||||||||||||||||||||||||||   | ||
seq2  TTTTCCTCCCAATAAAACACCTCTTCTATGGACCCACTTTTTTTCTCTTT  800

seq1  CTCTTAAATGAAAACA-TTATTATTTTTC-TTATATCATTCCCTCAG-TG  845
      |||||||||||||||| |||||||||||| ||||||||||||||||| ||
seq2  CTCTTAAATGAAAACATTTATTATTTTTCTTTATATCATTCCCTCAGTTG  850

seq1  TCCTCTCTCTTGTCAACAGAACAAGGACAACGTAAAGTTGTAATAATGAT  895
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCCTCTCTCTTGTCAACAGAACAAGGACAACGTATAGTTGTAATAATGAT  900

seq1  GGCAAAATCAGCCTAATATACAAGTCCTGTGATGGCCAATCCTGACTGCC  945
      |||||| ||||||| |||||| ||||||||||||||||||| ||||| ||
seq2  GGCAAATTCAGCCTTATATAC-AGTCCTGTGATGGCCAATCTTGACTTCC  949

seq1  AGCTTGACTGGCGATTGGT-GCAATACATT--CTCC-GTGTCTCTA-TAA  990
      ||||||||||||||||||| ||||||||||  |||| ||||||||| |||
seq2  AGCTTGACTGGCGATTGGTGGCAATACATTTCCTCCGGTGTCTCTATTAA  999

seq1  GGAGTCTTG-AGA-TGAGAAG-ACTCC-ATGAAGGCTCTGATGTAACTA-  1035
      ||||||||| ||| ||||||| ||||| ||||| ||||||||||||||| 
seq2  GGAGTCTTGAAGATTGAGAAGAACTCCTATGAAAGCTCTGATGTAACTAC  1049

seq1  CTGGATTAATCCCTTG-ATGGATTTGTAAACCAAT-GGCATTA-CTGCCA  1082
      |||||| ||||||||| ||||||||||||||| || ||||||| ||||||
seq2  CTGGATAAATCCCTTGAATGGATTTGTAAACCCATGGGCATTATCTGCCA  1099

seq1  GGTGATA-AAAAGTAGA  1098
      | ||||| |||||||||
seq2  GTTGATATAAAAGTAGA  1116