BAC Information

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BAC

Clone NameB6Ng01-216A22
Chromosome2 (Build37)
Map Location 6,671,410 - 6,811,286
singlet/doubletdoublet
Overlap geneCugbp2, LOC100040659
Upstream geneCdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387
Downstream geneLOC100040648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216A22.bB6Ng01-216A22.g
ACCGA032846GA032847
length7021,150
definitionB6Ng01-216A22.b B6Ng01-216A22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,810,586 - 6,811,286)(6,671,410 - 6,672,551)
sequence
gaattcttacacacggtccctacaataccaccaaacacttgctttaccaa
atgactttggatcagttgtcatccttgtgctttggagagtgactgctcct
acctgtgtcctatggttttgaacgtgtaacacacccaccccacttctgca
caagccagtggagaggaatgtaatctgaatggccaggcttgtagcacact
ctgttagttctacccagggctcacctctgagctcatttctctgctcggcc
cccatgacaccaaccaaaactttgcctctgtggttgaaaagcttatgtca
aaaagatcttgtgtcttttgctcaatatcagcagaaatgaaagaagctgc
gtctgtttgcacactacaaaaatttacacgtgttttaccaatgttattga
aaacctactgtatgtactgcacttggtatttggaagtctatttcttttag
gatttagtcatttactctatatttactatgaaaattatttccatctgtgg
taacaatataatatgttgctttagagtgtgtgtgtatacagaatatatat
atcgtgtgtgtatatatatatgtacatatatatacacatatatatgtata
tatatatatattctgtgtatactatacataatatgtgtatactatatata
atatgttaatatattaatatagtgtatgtgtatagtatatatggtattgt
gt

gaattcttaaacacaaaggcaaggggaccggatgataaaactaatacagg
gagagttagactgcacagatatgttgtatggtttaaacacaaatggccct
ataggctcatatatgtttgaatatttagtcttgagttggtgaaactgttc
gggaaggatggggagtgtcattgctggaggaggtacatcactggggcttt
gacattgacatttgaaaagctcaggctatcagagttagctctctggtttg
tagggtggatcaagtgactgatctagtgctatgcacacatgcctgttgcc
gtgtttcccacgatgtatgatagactttaaccctttcaaactataaaccc
caaacaaatgttttcttttttaagttgccttggacatagtttctcatcac
agcaataaaaaagtatctaaaacatggatataattctaacttgtttaata
aagatctgaattatcagaagttttcactttttatagtgagttttacccca
gaatgcagtaattagaatttaattgatgcctggaaatatacagaggaaaa
tcaggaatttgtgttcatccttagctacattttgagtttaaggctagcct
tattttacatgatactgcctcagaaaacagaaacaaatcagtatctgttc
aaaatattatttcaataataaatattttaataaagaataagtatttttct
atgagttagtagaaatttcaatttctactaagtaaaagtgttaccattca
ggaagctggccctttatgtctaagtatctataagattcaaatgattgctc
tttgactaaagaactgtttttccatgaaaaacaaaacaaaacaaaacaac
gccaaataaaaccaaacaaagcaaggtcaattaatcactgacctcccaga
agctaacagagcatattctacataaaaggaggtgtaagcttccctttgtc
ctcagcttaagttggtctatagctccagtcaaacaccacgaaaggcaatg
gtggagaaatggcttacaggtacaggcagaactcagaaggcacactgaca
caggaggccacagaaggagggcttcttatagccttctcccgagagccttg
catatacctgctttttccttacagataataataagggccaactgtctagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_6810586_6811286
seq2: B6Ng01-216A22.b_47_748 (reverse)

seq1  ACACAATA-CATATATACTATACACATACACTATATTAATATATTAACAT  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATACCATATATACTATACACATACACTATATTAATATATTAACAT  50

seq1  ATTATATATAGTATACACATATTATGTATAGTATACACAGAATATATATA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATATAGTATACACATATTATGTATAGTATACACAGAATATATATA  100

seq1  TATATACATATATATGTGTATATATATGTACATATATATATACACACACG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATATATATGTGTATATATATGTACATATATATATACACACACG  150

seq1  ATATATATATTCTGTATACACACACACTCTAAAGCAACATATTATATTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATTCTGTATACACACACACTCTAAAGCAACATATTATATTGT  200

seq1  TACCACAGATGGAAATAATTTTCATAGTAAATATAGAGTAAATGACTAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGATGGAAATAATTTTCATAGTAAATATAGAGTAAATGACTAAA  250

seq1  TCCTAAAAGAAATAGACTTCCAAATACCAAGTGCAGTACATACAGTAGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAAGAAATAGACTTCCAAATACCAAGTGCAGTACATACAGTAGGT  300

seq1  TTTCAATAACATTGGTAAAACACGTGTAAATTTTTGTAGTGTGCAAACAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATAACATTGGTAAAACACGTGTAAATTTTTGTAGTGTGCAAACAG  350

seq1  ACGCAGCTTCTTTCATTTCTGCTGATATTGAGCAAAAGACACAAGATCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGCTTCTTTCATTTCTGCTGATATTGAGCAAAAGACACAAGATCTT  400

seq1  TTTGACATAAGCTTTTCAACCACAGAGGCAAAGTTTTGGTTGGTGTCATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATAAGCTTTTCAACCACAGAGGCAAAGTTTTGGTTGGTGTCATG  450

seq1  GGGGCCGAGCAGAGAAATGAGCTCAGAGGTGAGCCCTGGGTAGAACTAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCGAGCAGAGAAATGAGCTCAGAGGTGAGCCCTGGGTAGAACTAAC  500

seq1  AGAGTGTGCTACAAGCCTGGCCATTCAGATTACATTCCTCTCCACTGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTGCTACAAGCCTGGCCATTCAGATTACATTCCTCTCCACTGGCT  550

seq1  TGTGCAGAAGTGGGGTGGGTGTGTTACACGTTCAAAACCATAGGACACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGAAGTGGGGTGGGTGTGTTACACGTTCAAAACCATAGGACACAG  600

seq1  GTAGGAGCAGTCACTCTCCAAAGCACAAGGATGACAACTGATCCAAAGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGCAGTCACTCTCCAAAGCACAAGGATGACAACTGATCCAAAGTC  650

seq1  ATTTGGTAAAGCAAGTGTTTGGTGGTATTGTAGGGACCGTGTGTAAGAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTAAAGCAAGTGTTTGGTGGTATTGTAGGGACCGTGTGTAAGAAT  700

seq1  TC  701
      ||
seq2  TC  702


seq1: chr2_6671410_6672551
seq2: B6Ng01-216A22.g_69_1218

seq1  GAATTCTTAAACACAAAGGCAAGGGGACCGGATGATAAAACTAATACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAACACAAAGGCAAGGGGACCGGATGATAAAACTAATACAGG  50

seq1  GAGAGTTAGACTGCACAGATATGTTGTATGGTTTAAACACAAATGGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTAGACTGCACAGATATGTTGTATGGTTTAAACACAAATGGCCCT  100

seq1  ATAGGCTCATATATGTTTGAATATTTAGTCTTGAGTTGGTGAAACTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTCATATATGTTTGAATATTTAGTCTTGAGTTGGTGAAACTGTTC  150

seq1  GGGAAGGATGGGGAGTGTCATTGCTGGAGGAGGTACATCACTGGGGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGATGGGGAGTGTCATTGCTGGAGGAGGTACATCACTGGGGCTTT  200

seq1  GACATTGACATTTGAAAAGCTCAGGCTATCAGAGTTAGCTCTCTGGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGACATTTGAAAAGCTCAGGCTATCAGAGTTAGCTCTCTGGTTTG  250

seq1  TAGGGTGGATCAAGTGACTGATCTAGTGCTATGCACACATGCCTGTTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGGATCAAGTGACTGATCTAGTGCTATGCACACATGCCTGTTGCC  300

seq1  GTGTTTCCCACGATGTATGATAGACTTTAACCCTTTCAAACTATAAACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCCCACGATGTATGATAGACTTTAACCCTTTCAAACTATAAACCC  350

seq1  CAAACAAATGTTTTCTTTTTTAAGTTGCCTTGGACATAGTTTCTCATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAATGTTTTCTTTTTTAAGTTGCCTTGGACATAGTTTCTCATCAC  400

seq1  AGCAATAAAAAAGTATCTAAAACATGGATATAATTCTAACTTGTTTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAAAAAAGTATCTAAAACATGGATATAATTCTAACTTGTTTAATA  450

seq1  AAGATCTGAATTATCAGAAGTTTTCACTTTTTATAGTGAGTTTTACCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGAATTATCAGAAGTTTTCACTTTTTATAGTGAGTTTTACCCCA  500

seq1  GAATGCAGTAATTAGAATTTAATTGATGCCTGGAAATATACAGAGGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAGTAATTAGAATTTAATTGATGCCTGGAAATATACAGAGGAAAA  550

seq1  TCAGGAATTTGTGTTCATCCTTAGCTACATTTTGAGTTTAAGGCTAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATTTGTGTTCATCCTTAGCTACATTTTGAGTTTAAGGCTAGCCT  600

seq1  TATTTTACATGATACTGCCTCAGAAAACAGAAACAAATCAGTATCTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACATGATACTGCCTCAGAAAACAGAAACAAATCAGTATCTGTTC  650

seq1  AAAATATTATTTCAATAATAAATATTTTAATAAAGAATAAGTATTTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTATTTCAATAATAAATATTTTAATAAAGAATAAGTATTTTTCT  700

seq1  ATGAGTTAGTAGAAA-TTCAATTTCTACTAAGTAAAAGTGTTACCATTCA  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGAGTTAGTAGAAATTTCAATTTCTACTAAGTAAAAGTGTTACCATTCA  750

seq1  GGAAGCTGG-CCTTTATGTCTAAGTATCTATAAGATTCAAATGATTGCTC  798
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGGCCCTTTATGTCTAAGTATCTATAAGATTCAAATGATTGCTC  800

seq1  TTTGACTAAAGAACTGTTTTTCCATGAAAAACAAAACAAAACAAAACAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTAAAGAACTGTTTTTCCATGAAAAACAAAACAAAACAAAACAAC  850

seq1  GCCAAATAAAACCAAACAAAGCAAGGTCAATTAATCACTGACCTCCCAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATAAAACCAAACAAAGCAAGGTCAATTAATCACTGACCTCCCAGA  900

seq1  AGCT-ACAGAGCATATTCTACAT-AAAGGA-GTGTAAGCTTCCCTTTGTC  945
      |||| |||||||||||||||||| |||||| |||||||||||||||||||
seq2  AGCTAACAGAGCATATTCTACATAAAAGGAGGTGTAAGCTTCCCTTTGTC  950

seq1  CTTCAGCTTAGGTTGTTCTATAGCTCCAGTCAAACACCACGAAAGGCAAT  995
      | |||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  C-TCAGCTTAAGTTGGTCTATAGCTCCAGTCAAACACCACGAAAGGCAAT  999

seq1  -GTGGAGGAAATGGCTTACAGGTTACA-GCAGAACCCAGAGGCAACAACT  1043
       ||||| ||||||||||||||| |||| ||||||| |||| |  || |||
seq2  GGTGGA-GAAATGGCTTACAGG-TACAGGCAGAACTCAGAAGGCAC-ACT  1046

seq1  GACACA-GAGGCCACAGAA-GAAGGCTTCTTATAGCTTTCTCCCCAGAG-  1090
      |||||| |||||||||||| || ||||||||||||| ||||||| |||| 
seq2  GACACAGGAGGCCACAGAAGGAGGGCTTCTTATAGCCTTCTCCCGAGAGC  1096

seq1  CTTGCA-ATACCTGCTTTTTTCTTACAGATAATAGT-AGGGCCACCTGTC  1138
      |||||| ||||||||||||| ||||||||||||| | ||||||| |||||
seq2  CTTGCATATACCTGCTTTTTCCTTACAGATAATAATAAGGGCCAACTGTC  1146

seq1  TAGC  1142
      ||||
seq2  TAGC  1150


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