BAC Information

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BAC

Clone NameB6Ng01-216C07
Chromosome2 (Build37)
Map Location 6,716,737 - 6,897,205
singlet/doubletdoublet
Overlap geneCugbp2
Upstream geneCdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, LOC100040659
Downstream geneLOC100040648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216C07.bB6Ng01-216C07.g
ACCGA032909GA032910
length7441,126
definitionB6Ng01-216C07.b B6Ng01-216C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,896,462 - 6,897,205)(6,716,737 - 6,717,885)
sequence
gaattctctagtgagcgtatgttgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtctgtgtgtgtggtgtattcatggtgcaggta
catctttgtggatgatggagatcaacatcaggtgtcttcaatgaccactc
tccatcctactttttggctgggtctctggctgaacctggagctcacagtc
agctaaactatctggccagcaagtccgggaatccttctgtgtctccccag
caacaggattataggcaggcactgctgtccatgaatttttacacaggtac
cagggatctgaacgtggactttcttattcacctagcaagtgctgtgttcc
ttttgttctctcctcgttccagcaaagagctcttaatacaactctaaaag
catgagtcaaaactagtatattctacttcatgaaaaaaaaatcacctctt
tgtgtatcatcgaatgtaaagtgaaaagcaagacacagcgttgtaggaat
ttcaatgtagggatcgctttaaacatatacacacaatctgaatcactcac
caataagaaaataaatcttttaattgggtgaaatattggatgaagataga
aaaagatacattatgcacattacaagtttctcaatattattatttaatta
aatgtacagtgggctactatcacttgactattcatacatggctgaaatta
attcccttcccaaacattctgaagggaggctttggagtgttatc

gaattcattaaagactcacactgaacttttgaactgctttagttcctaat
atgttgccttgcacagacgccatcaggagaaaactggtttaaaaattctt
ctactttaacatttaacaaacgtgaaaaatatgcaaggccgtgaaaagca
gatcgctgccttaccttctttgaagtttcgaaaaagcaaaactagtttat
tttagggagagaaaatgttagaataaaacttgaagcttacaaacttgatg
aaaatgttctgtcacaaggaatatgatcagtttaaaaggcatgaattatg
acacaatgtttctgtaagtgcatattgttgttatcgggctattgctactg
gtagaataatattgataaaagatcctatcattaagcactgacatttttag
aagaatacggacaggaaaagcttcttgtttgttaacaaaggcatctccca
gggcaactgtgatgcccacagaaaagcataatttagaatggaagggtgtt
actaatgtccttcagctgggcagccttagctagaaatctcatgagcactc
aacacacactcatttttttccctgtgagtttttagtaacagtctagtgtc
acctcttaaaataacagaagccaaaccaaaatcatgtaatcacttacaga
caatccaaagtgcagaggcaatatatcgtccaccatctacaaaccctccc
accatccatctgctcagtatctgaggaccatgcttggagcaatacacggt
ctacatggcacattttataaatcatcaaaagccccgaggccactattttt
cttttgggtatttttcctaaacacacctagaaacacctctcaatgacttt
attttattttatataaaagaatagtagtagcttagaaactaatattgcat
aattctgctgtgtactgtaacctaaacaaacccacattttaagacagaca
caaagccatcagatgtctcatgattagtctctgtcttaactcatcttgaa
cattcattctctgcagtgacacccatctctcctcgtcttagagagtagaa
tcatcattcgctgacttatagaatgaatttgtactgaattagctctgtct
aacccacacaagagctattatccatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_6896462_6897205
seq2: B6Ng01-216C07.b_44_787 (reverse)

seq1  GATAGCACTCCAATGCCTCCCTTCAGAATGCTTTGGAATGGAATTAATTT  50
      |||| |||||||| |||||||||||||||| || |||| |||||||||||
seq2  GATAACACTCCAAAGCCTCCCTTCAGAATGTTTGGGAAGGGAATTAATTT  50

seq1  CAGCCATGTATGAAATAGTCAAGTGATAGTAGCCCACTGTACATTTAATT  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGTATG-AATAGTCAAGTGATAGTAGCCCACTGTACATTTAATT  99

seq1  AAATAATAATATTGAGAAACTTGTAATGTGCAT-ATGTATCTTTGTCTAT  149
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  AAATAATAATATTGAGAAACTTGTAATGTGCATAATGTATCTTTTTCTAT  149

seq1  CTTCATCCAATATTTCACCCAATTAAAAGATTTATTTTCTTATTGGTGAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCAATATTTCACCCAATTAAAAGATTTATTTTCTTATTGGTGAG  199

seq1  TGCTTCAGATTGTGTGTATATGTTTAAAGCGATCCCTACATTGGAATTCC  249
      || |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGATTCAGATTGTGTGTATATGTTTAAAGCGATCCCTACATTGAAATTCC  249

seq1  TACAACGCTGTGTCTTGCTTTTCACTTTACATTCGATGATACACAAAGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACGCTGTGTCTTGCTTTTCACTTTACATTCGATGATACACAAAGAG  299

seq1  GTGATTTTTTTTTCATGAAGTAGAATATACTAGTTTTGACTCATGCTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTTTTTTCATGAAGTAGAATATACTAGTTTTGACTCATGCTTTT  349

seq1  AGAGTTGTATTAAGAGCTCTTTGCTGGAACGAGGAGAGAACAAAAGGAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGTATTAAGAGCTCTTTGCTGGAACGAGGAGAGAACAAAAGGAAC  399

seq1  ACAGCACTTGCTAGGTGAATAAGAAAGTCCACGTTCAGATCCCTGGTACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTTGCTAGGTGAATAAGAAAGTCCACGTTCAGATCCCTGGTACC  449

seq1  TGTGTAAAAATTCATGGACAGCAGTGCCTGCCTATAATCCTGTTGCTGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAAAATTCATGGACAGCAGTGCCTGCCTATAATCCTGTTGCTGGG  499

seq1  GAGACACAGAAGGATTCCCGGACTTGCTGGCCAGATAGTTTAGCTGACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACAGAAGGATTCCCGGACTTGCTGGCCAGATAGTTTAGCTGACTG  549

seq1  TGAGCTCCAGGTTCAGCCAGAGACCCAGCCAAAAAGTAGGATGGAGAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCAGGTTCAGCCAGAGACCCAGCCAAAAAGTAGGATGGAGAGTG  599

seq1  GTCATTGAAGACACCTGATGTTGATCTCCATCATCCACAAAGATGTACCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGAAGACACCTGATGTTGATCTCCATCATCCACAAAGATGTACCT  649

seq1  GCACCATGAATACACCACACACACAGACACACACACACACACACACACAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATGAATACACCACACACACAGACACACACACACACACACACACAC  699

seq1  ACACACACACACACACACACACAACATACGCTCACTAGAGAATTC  744
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACAACATACGCTCACTAGAGAATTC  744


seq1: chr2_6716737_6717885
seq2: B6Ng01-216C07.g_65_1190

seq1  GAATTCATTAAAGACTCACACTGAACTTTTGAACTGCTTTAGTTCCTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAGACTCACACTGAACTTTTGAACTGCTTTAGTTCCTAAT  50

seq1  ATGTTGCCTTGCACAGACGCCATCAGGAGAAAACTGGTTTAAAAATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCCTTGCACAGACGCCATCAGGAGAAAACTGGTTTAAAAATTCTT  100

seq1  CTACTTTAACATTTAACAAACGTGAAAAATATGCAAGGCCGTGAAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTAACATTTAACAAACGTGAAAAATATGCAAGGCCGTGAAAAGCA  150

seq1  GATCGCTGCCTTACCTTCTTTGAAGTTTCGAAAAAGCAAAACTAGTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGCTGCCTTACCTTCTTTGAAGTTTCGAAAAAGCAAAACTAGTTTAT  200

seq1  TTTAGGGAGAGAAAATGTTAGAATAAAACTTGAAGCTTACAAACTTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGAGAGAAAATGTTAGAATAAAACTTGAAGCTTACAAACTTGATG  250

seq1  AAAATGTTCTGTCACAAGGAATATGATCAGTTTAAAAGGCATGAATTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTCTGTCACAAGGAATATGATCAGTTTAAAAGGCATGAATTATG  300

seq1  ACACAATGTTTCTGTAAGTGCATATTGTTGTTATCGGGCTATTGCTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGTTTCTGTAAGTGCATATTGTTGTTATCGGGCTATTGCTACTG  350

seq1  GTAGAATAATATTGATAAAAGATCCTATCATTAAGCACTGACATTTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATAATATTGATAAAAGATCCTATCATTAAGCACTGACATTTTTAG  400

seq1  AAGAATACGGACAGGAAAAGCTTCTTGTTTGTTAACAAAGGCATCTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACGGACAGGAAAAGCTTCTTGTTTGTTAACAAAGGCATCTCCCA  450

seq1  GGGCAACTGTGATGCCCACAGAAAAGCATAATTTAGAATGGAAGGGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAACTGTGATGCCCACAGAAAAGCATAATTTAGAATGGAAGGGTGTT  500

seq1  ACTAATGTCCTTCAGCTGGGCAGCCTTAGCTAGAAATCTCATGAGCACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGTCCTTCAGCTGGGCAGCCTTAGCTAGAAATCTCATGAGCACTC  550

seq1  AACACACACTCATTTTTTTCCCTGTGAGTTTTTAGTAACAGTCTAGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACTCATTTTTTTCCCTGTGAGTTTTTAGTAACAGTCTAGTGTC  600

seq1  ACCTCTTAAAATAACAGAAGCCAAACCAAAATCATGTAATCACTTACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTAAAATAACAGAAGCCAAACCAAAATCATGTAATCACTTACAGA  650

seq1  CAATCCAAAGTGCAGAGGCAATATATCGTCCACCATCTACAAACCCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAAAGTGCAGAGGCAATATATCGTCCACCATCTACAAACCCTCCC  700

seq1  ACCATCCATCTGCTCAGTATCTGAGGACCATGCTTGGAGCAATACACGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCATCTGCTCAGTATCTGAGGACCATGCTTGGAGCAATACACGGT  750

seq1  CTACATGGCACATTTTATAAATCATCAAAAGCCCCGAGGCCACTATTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGGCACATTTTATAAATCATCAAAAGCCCCGAGGCCACTATTTTT  800

seq1  CTTTTGGGTATTTTTCCTAAACACACCTAGAAACACCTCTCAATGACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGTATTTTTCCTAAACACACCTAGAAACACCTCTCAATGACTTT  850

seq1  ATTTTATTTTATATAAAAGAATAGTAGTAGCTTTAGAAACTAATATTGCA  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTTTATTTTATATAAAAGAATAGTAGTAGC-TTAGAAACTAATATTGCA  899

seq1  TAATTCTGCTGTGTACTGTAACCTAAACAAACCCACATTTTAAGACAGAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAATTCTGCTGTGTACTGTAACCTAAACAAACCCACATTTTAAGACAG-A  948

seq1  CACAAAAGCCATCAGATGTCTCCAATGAATTAGTCTTCCTGTCTTAAACT  1000
      ||| ||||||||||||||||||  ||| ||||||||  ||||||| ||||
seq2  CAC-AAAGCCATCAGATGTCTC--ATG-ATTAGTCT--CTGTCTT-AACT  991

seq1  CATCTTTGAACATCCAATTTCTTCTGCAGTGACACCCATCTCTCCTCGTT  1050
      |||| |||||||| ||  ||| |||||||||||||||||||||||||| |
seq2  CATC-TTGAACATTCA--TTC-TCTGCAGTGACACCCATCTCTCCTCG-T  1036

seq1  CTTTAAGAGAGTAGAATCATCATTCGCTGGAATTTATAGAAATGTATTTG  1100
      |||  ||||||||||||||||||||||||  | |||||| |||| |||||
seq2  CTT--AGAGAGTAGAATCATCATTCGCTG--ACTTATAG-AATGAATTTG  1081

seq1  TAACTGAAATTTTAGCTCTGTCTAA-CCACACAAGAAGCTATTATCCATC  1149
      | ||||||   |||||||||||||| ||||||||| ||||||||||||||
seq2  T-ACTGAA---TTAGCTCTGTCTAACCCACACAAG-AGCTATTATCCATC  1126


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