BAC Information

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BAC

Clone NameB6Ng01-216H18
Chromosome2 (Build37)
Map Location 152,153,651 - 152,154,651
singlet/doubletsinglet
Overlap geneRbck1
Upstream geneLOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20
Downstream geneTrib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216H18.bB6Ng01-216H18.g
ACCGA033162GA033163
length1,0111,210
definitionB6Ng01-216H18.b B6Ng01-216H18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggacagccagggctacacagagaaaccctgtctcaaaccgcc
cccccccccaaaaaaaagcaatctgagcaagcctggaagagcagaagcgg
cattcctccacagactcggcttcagttcctgtctccgggttcctgacccc
acctccctcagtgatagaatagaagctgggatgcattagccaggcttttt
ccttcccaagctgcttccggtcatggtgtttattccaatagaaagcaaac
cagaacaacctgcatggacagcccacactgggagactccctctggatctc
cacccaacaggaagccctgcctatgctctatgctggctcacagtggctga
agggacagcagcagtactggggatgagccagggccttgcactaggggagt
gttctacagctgacctgggtctcagccccttattattcatgtgttttatg
tatgtgagtacaccgttgctgtcttcagacacaccaggaggaggtatcag
atccaattacggatggtggtgagccaccatgtggttgctagacattgaac
tcaagacctctgcagtctgttctcttaaccacggcgctatctctccaacc
cagaagttttttgtttctgttttgttgttgtttgtcttgatatatatttt
ctagccctttatttttattttgagacagggtcagtaaattgccaaggcag
gctttaaacttgtcatctatctgtttcagcctcccaagaagctgtcacca
agttgggcaaattctttcgtagggaaaggaagagtctttttggtttggtt
tgaaacagggtcttcatgtaaggctggttcctgaactccctctcaagctt
gaagatgcccttgaactttccgatcctctattccaaatgtctaagtgttg
ggattatggtctgctctggctgcacccgttccttcttcttctgccaacga
gcaacattctggtgttgaacacacctggaccatttagttcatttatcctt
ttccagcagcc
gaattccacttaagatgttatctttccaaatggttggacatgttgaatcc
ggaagaaacaagagtactaattcttgcacacagagactaagagagagagc
tgagataagactcttctgttggtttgtttagaagcaaagaacagaagatt
gacaactcatgcttcaaaaatcacttgtatcaaaaagaaaacagaaaaaa
tacaatattccctttttttaaaaaaaatttattttatttatatgagtaca
ctgtagctgtcttcagacacaccagaagagggcatcagatcccattacag
atggttgtgagccaccatgcagttgtgggaattgaactcaggacctctgg
aagagaaccaatccaggatcctttgcaagagcagcaagcactcttaaccc
ctgagccttctctccagcccacaatattcctgttttaaaagattttattt
ttttattttatgtctgggtaccacatacacacctggtacccatggagacc
aagaaaaggcattagatcccttggaactgaaattatagttagttgaaagc
tgccatgtaggtcctgggaatcaaacctgggttctctgaaaaagcattgc
ctttaacgcacatactttaaagggaaattccttttatacttttactccag
aaattgtcatgctagctcaaatagcaaggcccattaaggctgtatatact
tcagttctttcttagtatatttcgatcctaagacttaatgtacactgaaa
actgtgtattatggggactagagagatgactcagtgcttaaaagcacttt
tatcttgcagaggactcagttcaatttctcatcacccacatgatagttct
cagtcatccataactccaattctagggttatctgatgtccttgtcttacc
tccatgggcaccaggcatacattgtggtatacagaccatacatgcggagc
aaaaacactccctccatttaaaatttaaataaataaattcttgagctgga
ttatggtggcacacatcttttattctcagcactcaaggaggcgaggcagg
ctgatcttcttgagttcgaagccagcctggttcttcagaagtgagttcag
aacaagcaagttaacacagagaatgcccttgcttcaaaaacaagaatcta
ggcagagctatatctcctcctttaagaaagaactcgtggatgtaacgaat
gagctctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152153651_152154651
seq2: B6Ng01-216H18.b_49_1059

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAACCGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAACCGCC  50

seq1  CCCCCCCCCAAAAAAAAGCAATCTGAGCAAGCCTGGAAGAGCAGAAGCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCAAAAAAAAGCAATCTGAGCAAGCCTGGAAGAGCAGAAGCGG  100

seq1  CATTCCTCCACAGACTCGGCTTCAGTTCCTGTCTCCGGGTTCCTGACCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTCCACAGACTCGGCTTCAGTTCCTGTCTCCGGGTTCCTGACCCC  150

seq1  ACCTCCCTCAGTGATAGAATAGAAGCTGGGATGCATTAGCCAGGCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTCAGTGATAGAATAGAAGCTGGGATGCATTAGCCAGGCTTTTT  200

seq1  CCTTCCCAAGCTGCTTCCGGTCATGGTGTTTATTCCAATAGAAAGCAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCAAGCTGCTTCCGGTCATGGTGTTTATTCCAATAGAAAGCAAAC  250

seq1  CAGAACAACCTGCATGGACAGCCCACACTGGGAGACTCCCTCTGGATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAACCTGCATGGACAGCCCACACTGGGAGACTCCCTCTGGATCTC  300

seq1  CACCCAACAGGAAGCCCTGCCTATGCTCTATGCTGGCTCACAGTGGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAACAGGAAGCCCTGCCTATGCTCTATGCTGGCTCACAGTGGCTGA  350

seq1  AGGGACAGCAGCAGTACTGGGGATGAGCCAGGGCCTTGCACTAGGGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGCAGCAGTACTGGGGATGAGCCAGGGCCTTGCACTAGGGGAGT  400

seq1  GTTCTACAGCTGACCTGGGTCTCAGCCCCTTATTATTCATGTGTTTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACAGCTGACCTGGGTCTCAGCCCCTTATTATTCATGTGTTTTATG  450

seq1  TATGTGAGTACACCGTTGCTGTCTTCAGACACACCAGGAGGAGGTATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGTACACCGTTGCTGTCTTCAGACACACCAGGAGGAGGTATCAG  500

seq1  ATCCAATTACGGATGGTGGTGAGCCACCATGTGGTTGCTAGACATTGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATTACGGATGGTGGTGAGCCACCATGTGGTTGCTAGACATTGAAC  550

seq1  TCAAGACCTCTGCAGTCTGTTCTCTTAACCACGGCGCTATCTCTCCAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACCTCTGCAGTCTGTTCTCTTAACCACGGCGCTATCTCTCCAACC  600

seq1  CAGAAGTTTTTTGTTTCTGTTTTGTTGTTGTTTGTCTTGATATATATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTTTTTGTTTCTGTTTTGTTGTTGTTTGTCTTGATATATATTTT  650

seq1  CTAGCCCTTTATTTTTATTTTGAGACAGGGTCAGTAAATTGCCAAGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCTTTATTTTTATTTTGAGACAGGGTCAGTAAATTGCCAAGGCAG  700

seq1  GCTTTAAACTTGTCATCTATCTGTTTCAGCCTCCCAAGAAGCTGTCACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAACTTGTCATCTATCTGTTTCAGCCTCCCAAGAAGCTGTCACCA  750

seq1  AGTTGGGCAAATTCTTTCGTAGGGAAAGGAAGAGTC-TTTTGGTTTGGTT  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTTGGGCAAATTCTTTCGTAGGGAAAGGAAGAGTCTTTTTGGTTTGGTT  800

seq1  TGAAACAGGGTC-TCATGTAAGGCTGG-TCCTGAACTCCCTCTCAAGC-T  846
      |||||||||||| |||||||||||||| |||||||||||||||||||| |
seq2  TGAAACAGGGTCTTCATGTAAGGCTGGTTCCTGAACTCCCTCTCAAGCTT  850

seq1  GAAGATGCCCTTGAAC-TTCCGATCCTCTATTCC-AATGTCTAAGTGTTG  894
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  GAAGATGCCCTTGAACTTTCCGATCCTCTATTCCAAATGTCTAAGTGTTG  900

seq1  GGATTATGGTCTGCTCTGGCTGCACCCGTTCCTCTCTTCTGC--CCAACG  942
      ||||||||||||||||||||||||||||||||| |||||| |  ||||||
seq2  GGATTATGGTCTGCTCTGGCTGCACCCGTTCCT-TCTTCTTCTGCCAACG  949

seq1  AGCAACA-TCTGGTGTTGAACACACACCTGAC--ATTAG-TCATTTAATC  988
      ||||||| ||||||||||||||||| |  |||   |||| |||||||  |
seq2  AGCAACATTCTGGTGTTGAACACAC-CTGGACCATTTAGTTCATTTATCC  998

seq1  CTTTCCAGCAGCC  1001
       ||||||||||||
seq2  TTTTCCAGCAGCC  1011