BAC Information

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BAC

Clone NameB6Ng01-217J06
Chromosome2 (Build37)
Map Location 123,442,704 - 123,545,345
singlet/doubletdoublet
Overlap genenone
Upstream geneSpata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik, LOC100043360, Sema6d, LOC100043367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217J06.bB6Ng01-217J06.g
ACCGA033948GA033949
length1,197397
definitionB6Ng01-217J06.b B6Ng01-217J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,442,704 - 123,443,895)(123,544,943 - 123,545,345)
sequence
gaattccatgaccaagccaggctaaaggaggtgacattacaaattttttt
attgtcccatgggagcacatgcttaatcacataatggaagtcaggagaaa
ataaatgtttcttctcaatagcactttccattagcctgagtaatttattg
ctaataaaatactttttttatacaatcaacaaattgagtgtgtgatcagg
cttacatactatgtgacatggaaaaccaaggatgatcaagtgccaaacaa
tttctttaatagaatcttcatttcattagctgagctgaatgatggatatg
aaaaagtaaaacagagctatgtgcatgatgcctgaaatgacaatgatgtc
agagttcagaaaaaaatgtgcttcatctctgatatgtacaaaatgcccaa
aaagggagaaaattcaatgttggaaacaggagcacaatgcaattaagata
ggaacaaaaatcaaaagaaagaaaaggtaaaatcattgaaatcatggctt
ttccagatggcctgcagcgtgggttagatataggaaaacaaataagtaaa
ttgttggttacatggtttgaaattttgaaagcgccatatctaaccaaagg
acatagagtgtcattattcagaaaataagcatacacttaacattttatga
tgaaagggtataaggatccagcattacaaagactaatttgatttcatgga
attggaattgacatttgtgaaatgattacaagagtatttaaaagttcaat
cagaaaaagggtgttagattatttatgtataatattataattatttaact
actattctctcatcttaagaaattcttagaaattttagttatagtgctta
gcccatagtttttgtttgtctttaagaaataccttttatactaagtgaag
aaatatggctgtggtcagtagaaaggcaatgtatgtcaaagtcaatgtga
ggtcatataatgtggaatctgtagaataactttaaatatttgaatctcaa
atttcggaggatgatgataactgaaaacatattccagggaagctgggagt
ggagaattttaagacttggggagtatgccacctaattggatagcctaatc
agaacgggggggtacaaggaggaggcaattcctctcaggaaagaacgaat
gatgcctggattcagtctcacagttgttcagaagcatggggtgggag

ttggaagtttcttgctttgttcactatgtaaagttagtagtaaggaagaa
gggggaagtgggtgctctgacttgtagctgctgcgcaatctagcatcatg
gctttgagctggaacacatggcacaactaaaaactgattgcaactgtgac
agagattgatcatatcaagatttcagtgttcaaaattgtcttagtcactg
ttgtagctgtgaagagacaccatgaccaaggtaactcttatcaaggaaag
tgttgaatcagaagttttcttaaagtttcagaggtttagtacattaacat
catggcgtggagtctggcggtacacacagcaatggagcaggagttgaggg
atacatcctcatcaacagagagagagagagaggggtagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_123442704_123443895
seq2: B6Ng01-217J06.b_47_1243

seq1  GAATTCCATGACCAAGCCAGGCTAAAGGAGGTGACATTACAAATTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGACCAAGCCAGGCTAAAGGAGGTGACATTACAAATTTTTTT  50

seq1  ATTGTCCCATGGGAGCACATGCTTAATCACATAATGGAAGTCAGGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCCATGGGAGCACATGCTTAATCACATAATGGAAGTCAGGAGAAA  100

seq1  ATAAATGTTTCTTCTCAATAGCACTTTCCATTAGCCTGAGTAATTTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTTTCTTCTCAATAGCACTTTCCATTAGCCTGAGTAATTTATTG  150

seq1  CTAATAAAATACTTTTTTTATACAATCAACAAATTGAGTGTGTGATCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAATACTTTTTTTATACAATCAACAAATTGAGTGTGTGATCAGG  200

seq1  CTTACATACTATGTGACATGGAAAACCAAGGATGATCAAGTGCCAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATACTATGTGACATGGAAAACCAAGGATGATCAAGTGCCAAACAA  250

seq1  TTTCTTTAATAGAATCTTCATTTCATTAGCTGAGCTGAATGATGGATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAATAGAATCTTCATTTCATTAGCTGAGCTGAATGATGGATATG  300

seq1  AAAAAGTAAAACAGAGCTATGTGCATGATGCCTGAAATGACAATGATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAAAACAGAGCTATGTGCATGATGCCTGAAATGACAATGATGTC  350

seq1  AGAGTTCAGAAAAAAATGTGCTTCATCTCTGATATGTACAAAATGCCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCAGAAAAAAATGTGCTTCATCTCTGATATGTACAAAATGCCCAA  400

seq1  AAAGGGAGAAAATTCAATGTTGGAAACAGGAGCACAATGCAATTAAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGAAAATTCAATGTTGGAAACAGGAGCACAATGCAATTAAGATA  450

seq1  GGAACAAAAATCAAAAGAAAGAAAAGGTAAAATCATTGAAATCATGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAAAATCAAAAGAAAGAAAAGGTAAAATCATTGAAATCATGGCTT  500

seq1  TTCCAGATGGCCTGCAGCGTGGGTTAGATATAGGAAAACAAATAAGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATGGCCTGCAGCGTGGGTTAGATATAGGAAAACAAATAAGTAAA  550

seq1  TTGTTGGTTACATGGTTTGAAATTTTGAAAGCGCCATATCTAACCAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGTTACATGGTTTGAAATTTTGAAAGCGCCATATCTAACCAAAGG  600

seq1  ACATAGAGTGTCATTATTCAGAAAATAAGCATACACTTAACATTTTATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGTGTCATTATTCAGAAAATAAGCATACACTTAACATTTTATGA  650

seq1  TGAAAGGGTATAAGGATCCAGCATTACAAAGACTAATTTGATTTCATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGTATAAGGATCCAGCATTACAAAGACTAATTTGATTTCATGGA  700

seq1  ATTGGAATTGACATTTGTGAAATGATTACAAGAGTATTTAAAAGTTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAATTGACATTTGTGAAATGATTACAAGAGTATTTAAAAGTTCAAT  750

seq1  CAGAAAAAGGGTGTTAGATTATTTATGTATAATATTATAATTATTTAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAGGGTGTTAGATTATTTATGTATAATATTATAATTATTTAACT  800

seq1  ACTATTCTCTCATCTTAAGAAATTCTTAGAAATTTTAGTTATAGTGCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCTCTCATCTTAAGAAATTCTTAGAAATTTTAGTTATAGTGCTTA  850

seq1  GCCCATAGTTTTTGTTTGTCTTTAAGAAATACC-TTTATACTAAGTGAAG  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCCCATAGTTTTTGTTTGTCTTTAAGAAATACCTTTTATACTAAGTGAAG  900

seq1  AAATATGGCTGTGGTCAGTAGGAAAGGC-ATGTATGTCAAAGTCAATGTG  948
      |||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  AAATATGGCTGTGGTCAGTA-GAAAGGCAATGTATGTCAAAGTCAATGTG  949

seq1  AGGTCATATAATGTGGAATCTGTAGAATAACTTTAAATAATTTGAATCTC  998
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGTCATATAATGTGGAATCTGTAGAATAACTTTAAAT-ATTTGAATCTC  998

seq1  AAAATTTCGGAGGATGATGATAACTGAAAAACATA-TCCAGGAAAGCTGG  1047
       ||||||||||||||||||||||||| |||||||| |||||| |||||||
seq2  -AAATTTCGGAGGATGATGATAACTG-AAAACATATTCCAGGGAAGCTGG  1046

seq1  AAGTGGAAGAATTTTAAGACTGGGGAGGTATGC--ACTAA-TGGATAGCC  1094
       ||||| |||||||||||||| |||  ||||||   |||| |||||||||
seq2  GAGTGG-AGAATTTTAAGACTTGGGGAGTATGCCACCTAATTGGATAGCC  1095

seq1  TTATCAGAA--GGGGGGTACCAGGGAGGGAGGCATTCCCTCTCAAG-AAG  1141
      | |||||||  ||||||||| |||   ||||||| | ||||||| | |||
seq2  TAATCAGAACGGGGGGGTACAAGG--AGGAGGCAATTCCTCTCAGGAAAG  1143

seq1  ACAGAATTGGTTGCTGAATTCAGTCTCACAG-TGTTCAG-AGCA--GGGT  1187
      |  ||| || |  ||| |||||||||||||| ||||||| ||||  ||||
seq2  AACGAA-TGATGCCTGGATTCAGTCTCACAGTTGTTCAGAAGCATGGGGT  1192

seq1  GGGAG  1192
      |||||
seq2  GGGAG  1197


seq1: chr2_123544943_123545345
seq2: B6Ng01-217J06.g_67_469 (reverse)

seq1  TCTCTCTCTCTCCCCCTCTCTCTCTCTCTCTGTTGATGAGGATGTATCCC  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTACCCCTCTCTCTCTCTCTCTGTTGATGAGGATGTATCCC  50

seq1  TCAACTCCTGCTCCATTGCTGTGTGTACCGCCAGACTCCACGCCATGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCCTGCTCCATTGCTGTGTGTACCGCCAGACTCCACGCCATGATG  100

seq1  TTAATGTACTAAACCTCTGAAACTTTAAGAAAACTTCTGATTCAACACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTACTAAACCTCTGAAACTTTAAGAAAACTTCTGATTCAACACTT  150

seq1  TCCTTGATAAGAGTTACCTTGGTCATGGTGTCTCTTCACAGCTACAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATAAGAGTTACCTTGGTCATGGTGTCTCTTCACAGCTACAACAG  200

seq1  TGACTAAGACAATTTTGAACACTGAAATCTTGATATGATCAATCTCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAGACAATTTTGAACACTGAAATCTTGATATGATCAATCTCTGTC  250

seq1  ACAGTTGCAATCAGTTTTTAGTTGTGCCATGTGTTCCAGCTCAAAGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGCAATCAGTTTTTAGTTGTGCCATGTGTTCCAGCTCAAAGCCAT  300

seq1  GATGCTAGATTGCGCAGCAGCTACAAGTCAGAGCACCCACTTCCCCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAGATTGCGCAGCAGCTACAAGTCAGAGCACCCACTTCCCCCTTC  350

seq1  TTCCTTACTACTAACTTTACATAGTGAACAAAGCAAGAAACTTCCAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTACTACTAACTTTACATAGTGAACAAAGCAAGAAACTTCCAAGAA  400

seq1  TTC  403
      |||
seq2  TTC  403


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