BAC Information

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BAC

Clone NameB6Ng01-217N09
Chromosome2 (Build37)
Map Location 82,841,200 - 82,935,272
singlet/doubletdoublet
Overlap geneFsip2
Upstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440
Downstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217N09.bB6Ng01-217N09.g
ACCGA034128GA034129
length1,0891,007
definitionB6Ng01-217N09.b B6Ng01-217N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,841,200 - 82,842,289)(82,934,274 - 82,935,272)
sequence
gaattcatgagccaactgtattaggtattctttagaatattatctattat
ttaaagaaaatcctcacatgctatgatattcatgaacatggatgactttg
aactgattagcacaaatcacaaaatgatgaatattattaagactctactt
gtactattcgaagtcctgaagacacaaagtaaaatagtgatttcctggag
gataaaacaaacaataaaaatgggtgttagtgtttaagttcagaacatgg
tcaaggggtgaaagatagtgatgttggtacagtcatgtaaatgttcctaa
tgacatgaaacagtacattgcaactttctaagatgtccagttttatgtat
acttaatcacatatttaaaattgggaaaatcaatttataaattattctcc
ttccattttgaattttagcaacatactatctgtggtttgcttccatatga
agaatggcagattgttgttaaccagtagcttcttcatttgttaaatatac
acattaaaaatggttctttttattttattttagcgaagcagaagaatttc
taccagatgcaaaggctaatgcattagaaggttggattttttttaacttt
taagaactgatgaacaaaaaacattgttgattattttgataacttaatta
tttcctggtaggaaaatgttagttatcaaccttgaaagtgatagtacttt
attttttcattaagtatggctacttttaggaagtgattgttatcaattca
accatctgttaaaacaagcttaatactttgtcttatatgaagtgtgtaaa
tttatactgaccatcttcctgaaagaagagaaacatgtatatatgctaac
ttatatctagactataactggattaaattttctcattgaaaactcatgct
tcctttgtatcagagcttaccccaactaagattttaaagaccatcgagat
ttgatcacattcaattctggctagcatgaactgttttgggattttttact
atcatcatttatgcactgctaccacattctttagaatgcttaagttccat
atttgttcagactgaagaagatagctctgatacatgata
gaattctgtattaattgctacctttgtcattttcagtgttctttcatttt
aagccttcctgcctattctcaccaaggaacatcttccatctttaggattc
acatttggttatttttcatagtttgaatctctcttttgtgttaatcaatc
ctctgctctcttgagcatgtggaactattctcgctgctcttcagagtgct
ctgtcctgccccttgtctcacaccagagcttttctgtgtctgtttccatt
acctgacttttatccaggtaagaggttatatctttctggttgatgattta
ctatcttatgctatgttagagattatgagtgtctttatttggatggttag
aatgctgatgtttgaagagaaattttagttattttcaatgtttggggatg
attgaatggaagattttacaagcagcaatccttttctcgtcaagtcaact
aggacacaaaactttatctctatttcatatttctgtaggctggaaatgcc
tcaaggcaagaatttgtggtagttttgtggctaatttcatttacttccca
tgtttcatccacaagtccaatttgcttcttttccaaggccctgaacatgc
atgtcaagggttctgtcagagagctataccttcggtcctttctttaaaca
ctgcgaataaatcaatgacatcaaaactatctttaatggagtataaacca
atgattgtaggtataaagtaatatatagtcccattataaagaggatattc
ttttctaaataattctacctaaaacatgaagcttatatttaataataact
atacaaaatatcgaggcaaaatataatttttggaatgaactgattaatct
atacaaaattttgatgaactacatttcttctatacaatatatatttgaat
gtaactgaatatttgtggttttatatcactattttactagtaaaacaatg
gtattttgggtagaacatataccgtatggttctaaatggaataatcaaat
ttaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_82841200_82842289
seq2: B6Ng01-217N09.b_45_1133

seq1  GAATTCATGAGCCAACTGTATTAGGTATTCTTTAGAATATTATCTATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGCCAACTGTATTAGGTATTCTTTAGAATATTATCTATTAT  50

seq1  TTAAAGAAAATCCTCACATGCTATGATATTCATGAACATGGATGACTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAAATCCTCACATGCTATGATATTCATGAACATGGATGACTTTG  100

seq1  AACTGATTAGCACAAATCACAAAATGATGAATATTATTAAGACTCTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTAGCACAAATCACAAAATGATGAATATTATTAAGACTCTACTT  150

seq1  GTACTATTCGAAGTCCTGAAGACACAAAGTAAAATAGTGATTTCCTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATTCGAAGTCCTGAAGACACAAAGTAAAATAGTGATTTCCTGGAG  200

seq1  GATAAAACAAACAATAAAAATGGGTGTTAGTGTTTAAGTTCAGAACATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAACAAACAATAAAAATGGGTGTTAGTGTTTAAGTTCAGAACATGG  250

seq1  TCAAGGGGTGAAAGATAGTGATGTTGGTACAGTCATGTAAATGTTCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGGTGAAAGATAGTGATGTTGGTACAGTCATGTAAATGTTCCTAA  300

seq1  TGACATGAAACAGTACATTGCAACTTTCTAAGATGTCCAGTTTTATGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGAAACAGTACATTGCAACTTTCTAAGATGTCCAGTTTTATGTAT  350

seq1  ACTTAATCACATATTTAAAATTGGGAAAATCAATTTATAAATTATTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATCACATATTTAAAATTGGGAAAATCAATTTATAAATTATTCTCC  400

seq1  TTCCATTTTGAATTTTAGCAACATACTATCTGTGGTTTGCTTCCATATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTTGAATTTTAGCAACATACTATCTGTGGTTTGCTTCCATATGA  450

seq1  AGAATGGCAGATTGTTGTTAACCAGTAGCTTCTTCATTTGTTAAATATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGCAGATTGTTGTTAACCAGTAGCTTCTTCATTTGTTAAATATAC  500

seq1  ACATTAAAAATGGTTCTTTTTATTTTATTTTAGCGAAGCAGAAGAATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAAAATGGTTCTTTTTATTTTATTTTAGCGAAGCAGAAGAATTTC  550

seq1  TACCAGATGCAAAGGCTAATGCATTAGAAGGTTGGATTTTTTTTAACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGATGCAAAGGCTAATGCATTAGAAGGTTGGATTTTTTTTAACTTT  600

seq1  TAAGAACTGATGAACAAAAAACATTGTTGATTATTTTGATAACTTAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACTGATGAACAAAAAACATTGTTGATTATTTTGATAACTTAATTA  650

seq1  TTTCCTGGTAGGAAAATGTTAGTTATCAACCTTGAAAGTGATAGTACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGTAGGAAAATGTTAGTTATCAACCTTGAAAGTGATAGTACTTT  700

seq1  ATTTTTTCATTAAGTATGGCTACTTTTAGGAAGTGATTGTTATCAATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCATTAAGTATGGCTACTTTTAGGAAGTGATTGTTATCAATTCA  750

seq1  ACCATCTGTTAAAACAAGCTTAATACTTTGTCTTATATGAAGTGTGTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGTTAAAACAAGCTTAATACTTTGTCTTATATGAAGTGTGTAAA  800

seq1  TTTATACTGACCATCTTCCTGAAAGAAGAGAAACATGTATATATGCTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTGACCATCTTCCTGAAAGAAGAGAAACATGTATATATGCTAAC  850

seq1  TTATATCTAGACTATAACTGGATTAAATTTTCTCATTGAAAACTCATGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTAGACTATAACTGGATTAAATTTTCTCATTGAAAACTCATGCT  900

seq1  TCCTTTGTATCAGAGCTTACCCCAACTAAGATTTTAAAGACCATCGAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTATCAGAGCTTACCCCAACTAAGATTTTAAAGACCATCGAGAT  950

seq1  TTGATCACATTCAATTCTGGCTAGCATGAACTGTTTTGGGATTTTTTACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCACATTCAATTCTGGCTAGCATGAACTGTTTTGGGATTTTTTACT  1000

seq1  ATCATCATTTATGCACTGCTAACCACA-TCTTTAGAATGCTTAAGTCCAA  1049
      |||||||||||||||||||| |||||| |||||||||||||||||| | |
seq2  ATCATCATTTATGCACTGCT-ACCACATTCTTTAGAATGCTTAAGTTCCA  1049

seq1  TATTTGTTCAGAACTGAAG-AGATAGCTCTGATTACATGATA  1090
      ||||||||||| ||||||| |||||||||||| |||||||||
seq2  TATTTGTTCAG-ACTGAAGAAGATAGCTCTGA-TACATGATA  1089

seq1: chr2_82934274_82935272
seq2: B6Ng01-217N09.g_68_1074 (reverse)

seq1  ATTTTAAATTTGA-TATT-CAATTAGAAGCAATACGTTATATG-TCTAAC  47
      ||||||||||||| |||| || |||||| | ||||| |||||| |||| |
seq2  ATTTTAAATTTGATTATTCCATTTAGAA-CCATACGGTATATGTTCTACC  49

seq1  C-AAATACAATGTTTTAACTAATAAAATATGGATATAAAA-CACAAATAT  95
      | |||||| ||  ||| |||| |||||||  ||||||||| |||||||||
seq2  CAAAATACCATTGTTTTACTAGTAAAATAGTGATATAAAACCACAAATAT  99

seq1  TCAGTTACATTCAAATATATATTGTATAGAAGAAATGTTAGTCATCAAAA  145
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  TCAGTTACATTCAAATATATATTGTATAGAAGAAATGTAGTTCATCAAAA  149

seq1  -TTTGTATAGATTAATCAGTTCATTCCAAAAATTATATTTTGCCTCGATA  194
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATAGATTAATCAGTTCATTCCAAAAATTATATTTTGCCTCGATA  199

seq1  TTTTGTATAGTTATTATTAAATATAAGCTTCATG-TTTAGGTAGAATTAT  243
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTTGTATAGTTATTATTAAATATAAGCTTCATGTTTTAGGTAGAATTAT  249

seq1  TTAGAAAAGAATATCCTCTTTATAATGGGACTATATATTACTTTATACCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAGAATATCCTCTTTATAATGGGACTATATATTACTTTATACCT  299

seq1  ACAATCATTGGTTTATACTCCATT-AAGATAGTTTTGATGTCATTGATTT  342
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACAATCATTGGTTTATACTCCATTAAAGATAGTTTTGATGTCATTGATTT  349

seq1  ATTCGCAGTGTTTAAAG-AAGGACCGAAGGTATAGCTCTCTGACAGAACC  391
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTCGCAGTGTTTAAAGAAAGGACCGAAGGTATAGCTCTCTGACAGAACC  399

seq1  CTTGACATGCATGTTCAGGGCCTTGGAAAAGAAGCAAATTGGACTTGTGG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACATGCATGTTCAGGGCCTTGGAAAAGAAGCAAATTGGACTTGTGG  449

seq1  ATGAAACATGGGAAGTAAATGAAATTAGCCACAAAACTACCACAAATTCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACATGGGAAGTAAATGAAATTAGCCACAAAACTACCACAAATTCT  499

seq1  TGCCTTGAGGCATTTCCAGCCTACAGAAATATGAAATAGAGATAAAGTTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGAGGCATTTCCAGCCTACAGAAATATGAAATAGAGATAAAGTTT  549

seq1  TGTGTCCTAGTTGACTTGACGAGAAAAGGATTGCTGCTTGTAAAATCTTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTAGTTGACTTGACGAGAAAAGGATTGCTGCTTGTAAAATCTTC  599

seq1  CATTCAATCATCCCCAAACATTGAAAATAACTAAAATTTCTCTTCAAACA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAATCATCCCCAAACATTGAAAATAACTAAAATTTCTCTTCAAACA  649

seq1  TCAGCATTCTAACCATCCAAATAAAGACACTCATAATCTCTAACATAGCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTCTAACCATCCAAATAAAGACACTCATAATCTCTAACATAGCA  699

seq1  TAAGATAGTAAATCATCAACCAGAAAGATATAACCTCTTACCTGGATAAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGTAAATCATCAACCAGAAAGATATAACCTCTTACCTGGATAAA  749

seq1  AGTCAGGTAATGGAAACAGACACAGAAAAGCTCTGGTGTGAGACAAGGGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGTAATGGAAACAGACACAGAAAAGCTCTGGTGTGAGACAAGGGG  799

seq1  CAGGACAGAGCACTCTGAAGAGCAGCGAGAATAGTTCCACATGCTCAAGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGAGCACTCTGAAGAGCAGCGAGAATAGTTCCACATGCTCAAGA  849

seq1  GAGCAGAGGATTGATTAACACAAAAGAGAGATTCAAACTATGAAAAATAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGGATTGATTAACACAAAAGAGAGATTCAAACTATGAAAAATAA  899

seq1  CCAAATGTGAATCCTAAAGATGGAAGATGTTCCTTGGTGAGAATAGGCAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTGAATCCTAAAGATGGAAGATGTTCCTTGGTGAGAATAGGCAG  949

seq1  GAAGGCTTAAAATGAAAGAACACTGAAAATGACAAAGGTAGCAATTAATA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTTAAAATGAAAGAACACTGAAAATGACAAAGGTAGCAATTAATA  999

seq1  CAGAATTC  999
      ||||||||
seq2  CAGAATTC  1007