BAC Information

Click to search

BAC

Clone NameB6Ng01-218F20
Chromosome2 (Build37)
Map Location 143,249,243 - 143,250,452
singlet/doubletsinglet
Overlap geneLOC668915
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218F20.bB6Ng01-218F20.g
ACCGA034514GA034515
length1,1981,061
definitionB6Ng01-218F20.b B6Ng01-218F20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagggaaagcttgccttacagggaggtaggggagctgctgctctt
ggattcatcgttatcttacatcagcttgacagaaggagttgaagcatcta
tatgtaagatgacttctttacacacacaacaaaggggttggttttctttg
acctgttcgtctttccagatggcatcttattcttcaaaggttgttgattg
ggcttcttgtggcatgtgagatcacagttgttccatataaatatatccat
ccattaactttccttgacagaactaatctcacatggctgttctcagagtc
aggcagtagaagttaccacctcttatgggctttatttatttattttttgc
tttatgttgacctgcatatacacctgtgtaccaggtgcaggactgaagcc
cacaaagatcatgaaacatacagttcacttgaactggaatcagagatgac
tatgaaacaccatattaacactgagaattgtgtctgtgccctcgtggagt
actcttaaccacttagatatctcttcagccacaactagaacaccatagcc
acttctacaatattatgttcatcagagcatttcttgaatgtaggaatgta
tggaaatgtgtagaaaatgttcttaaatgttgtgaaaaatttcctttgct
attattcattttagggacagaggagaagtaggtaccatttcgtgtatgtt
tcctttttctttacatttgagaaaactgtgtgcagagctataaatcgtct
tttgatggtactttggcaggaactagtttctggacaagtactctgtgcca
ccccaatctcttcaggaaagtggggagcagttttatatgtaggtgcatgg
aggaacatctattcgttcattctttaatactattggtgcctgaaactatc
tccctagtcagtattattcttcataaagactaactacaccaagtgcatgt
tatttggcaagagcagtatgagacagaatcaaaatataaaagtattaagt
tttggaatagagttatttctttgccaagacttctttcccatgtggaacat
cctggtaggttggcatggggacatgacgcattcaatggaggaacatttac
aatattggatccttgtagaagaaatggtcaggtgactctctagtggtttt
ctgcaattgaatgccaggtcccataaggaaactgggtaaggaatgcta
gaattctgggaactcttcagagggtataaaaatgttagagccttgagagg
tggagttattgtttgttgtttgtgggttgctgttgggttgctcttgattg
ctgtaatcatgcacaaagagacaagaaggagaaattagatattctgacag
tgaaaattaaatttgccccaaggaactccacacttctaatcagcaggaag
tagtctaatgataatgatactcccctttccctctatccttctttctctcc
tacctagtgttagggagtttgaaagtagaaaaccaaacaactgagtcaaa
tggggtagagaactaaactgagaattcacaactgaggaatctcaaatggc
ggggaagcacctaaagagatgttcgaagttcttagggatcagagaaatgc
aaatcaaaaacgaccctgagattacaccttataccaatcagaattgctaa
gatcaaaacctcaggtgacaacacatgtttgccaggatgtggagaaagag
gcacactcctccattgctggtgggattgccaactggtacaaccactctgg
aaatcaatctggaggttcctcagaaaattggaaatatatctacctaaaga
tacagctataccactcttgggaatatacccaaaagatgccccaccatgcc
acaggggcacatgttccactatgttcataacatccttgtttgtgatagct
agaatctggaaataacccagatatcccactacagaagaatggatacagaa
aatggggttcatttacacaatggaatactactcagctattaagaatgagg
atatcctgagttttgcaggcaaatagtttgaaactagaacatatcatcct
aactgaggtactcagacccaaaagtacatgcatagtatgtactcaccaat
aagtgaatattagctccccaaaaagacagattacccaagatacagtccac
agaacttcaaaaaggtcaacaagctgaagggccaaagtgaggatgcctca
gttcccaacttcgggagggagaagaaagcaatctacaagttgggaaggaa
gtgcaggtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143249243_143250452
seq2: B6Ng01-218F20.b_32_1229 (reverse)

seq1  TAGCTATTCCTTTCCCAGTT--CTTAGTGGGACTTGGCATTTAAAATGCA  48
      |||| ||||||| |||||||  |||| |||||| ||||| || || ||||
seq2  TAGC-ATTCCTTACCCAGTTTCCTTA-TGGGACCTGGCA-TTCAATTGCA  47

seq1  GAAAAACCAACTGAGAGTCACCTGACCCATTTCTTCTACAGGGATTCTCA  98
      | |||||||   ||||||||||||| |||||||||||||| |||| |   
seq2  G-AAAACCACTAGAGAGTCACCTGA-CCATTTCTTCTACAAGGATCCAAT  95

seq1  ACCATTTGTAAATG-TCCTCCATTTGAAATGCTGTCATTGTCCCCATTGC  147
      |    ||||||||| |||||||||   ||||| |||| |||||||| |||
seq2  A----TTGTAAATGTTCCTCCATT--GAATGC-GTCA-TGTCCCCA-TGC  136

seq1  CAAACCTACCAGGATGTTCCACATGGGAAAGAAGTCTTGGCAAAGAAATA  197
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AACCTACCAGGATGTTCCACATGGGAAAGAAGTCTTGGCAAAGAAATA  185

seq1  ACTCTATTCCAAAACTTAATACTTTTATATTTTGATTCTGTCTCATACTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATTCCAAAACTTAATACTTTTATATTTTGATTCTGTCTCATACTG  235

seq1  CTCTTGCCAAATAACATGCACTTGGTGTAGTTAGTCTTTATGAAGAATAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCAAATAACATGCACTTGGTGTAGTTAGTCTTTATGAAGAATAA  285

seq1  TACTGACTAGGGAGATAGTTTCAGGCACCAATAGTATTAAAGAATGAACG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACTAGGGAGATAGTTTCAGGCACCAATAGTATTAAAGAATGAACG  335

seq1  AATAGATGTTCCTCCATGCACCTACATATAAAACTGCTCCCCACTTTCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGTTCCTCCATGCACCTACATATAAAACTGCTCCCCACTTTCCT  385

seq1  GAAGAGATTGGGGTGGCACAGAGTACTTGTCCAGAAACTAGTTCCTGCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATTGGGGTGGCACAGAGTACTTGTCCAGAAACTAGTTCCTGCCA  435

seq1  AAGTACCATCAAAAGACGATTTATAGCTCTGCACACAGTTTTCTCAAATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCATCAAAAGACGATTTATAGCTCTGCACACAGTTTTCTCAAATG  485

seq1  TAAAGAAAAAGGAAACATACACGAAATGGTACCTACTTCTCCTCTGTCCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAAGGAAACATACACGAAATGGTACCTACTTCTCCTCTGTCCC  535

seq1  TAAAATGAATAATAGCAAAGGAAATTTTTCACAACATTTAAGAACATTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAATAATAGCAAAGGAAATTTTTCACAACATTTAAGAACATTTT  585

seq1  CTACACATTTCCATACATTCCTACATTCAAGAAATGCTCTGATGAACATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACATTTCCATACATTCCTACATTCAAGAAATGCTCTGATGAACATA  635

seq1  ATATTGTAGAAGTGGCTATGGTGTTCTAGTTGTGGCTGAAGAGATATCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAGAAGTGGCTATGGTGTTCTAGTTGTGGCTGAAGAGATATCTA  685

seq1  AGTGGTTAAGAGTACTCCACGAGGGCACAGACACAATTCTCAGTGTTAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTAAGAGTACTCCACGAGGGCACAGACACAATTCTCAGTGTTAAT  735

seq1  ATGGTGTTTCATAGTCATCTCTGATTCCAGTTCAAGTGAACTGTATGTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTTTCATAGTCATCTCTGATTCCAGTTCAAGTGAACTGTATGTTT  785

seq1  CATGATCTTTGTGGGCTTCAGTCCTGCACCTGGTACACAGGTGTATATGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCTTTGTGGGCTTCAGTCCTGCACCTGGTACACAGGTGTATATGC  835

seq1  AGGTCAACATAAAGCAAAAAATAAATAAATAAAGCCCATAAGAGGTGGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAACATAAAGCAAAAAATAAATAAATAAAGCCCATAAGAGGTGGTA  885

seq1  ACTTCTACTGCCTGACTCTGAGAACAGCCATGTGAGATTAGTTCTGTCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTACTGCCTGACTCTGAGAACAGCCATGTGAGATTAGTTCTGTCAA  935

seq1  GGAAAGTTAATGGATGGATATATTTATATGGAACAACTGTGATCTCACAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTAATGGATGGATATATTTATATGGAACAACTGTGATCTCACAT  985

seq1  GCCACAAGAAGCCCAATCAACAACCTTTGAAGAATAAGATGCCATCTGGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAAGAAGCCCAATCAACAACCTTTGAAGAATAAGATGCCATCTGGA  1035

seq1  AAGACGAACAGGTCAAAGAAAACCAACCCCTTTGTTGTGTGTGTAAAGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGAACAGGTCAAAGAAAACCAACCCCTTTGTTGTGTGTGTAAAGAA  1085

seq1  GTCATCTTACATATAGATGCTTCAACTCCTTCTGTCAAGCTGATGTAAGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTTACATATAGATGCTTCAACTCCTTCTGTCAAGCTGATGTAAGA  1135

seq1  TAACGATGAATCCAAGAGCAGCAGCTCCCCTACCTCCCTGTAAGGCAAGC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGATGAATCCAAGAGCAGCAGCTCCCCTACCTCCCTGTAAGGCAAGC  1185

seq1  TTTCCCTGAATTC  1210
      |||||||||||||
seq2  TTTCCCTGAATTC  1198