BAC Information

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BAC

Clone NameB6Ng01-218G01
Chromosome2 (Build37)
Map Location 171,474,939 - 171,636,068
singlet/doubletdoublet
Overlap genenone
Upstream geneDok5, LOC668955, LOC100043743
Downstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218G01.bB6Ng01-218G01.g
ACCGA034524GA034525
length1,106612
definitionB6Ng01-218G01.b B6Ng01-218G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,474,939 - 171,476,042)(171,635,481 - 171,636,068)
sequence
gaattccacaaatatgtacaactagcatacatttaaaacaaaatgaaggt
gctggataggtggctcggtggtgaagagcactgaccactcttccagaaga
gcccgagttctgtccctttaatcatatgtaaagtacagatatgaaaatag
aaagaacctctatgctttggcctatgtagactactcctcaagaaatcacc
aaagtcgttgtttattttgtgcgattttaatcaatactttcaatatgctc
actttatggagatggctactgctagttagcaaattaaaaataaatctgtt
tttcctttgcctctttccctccattcaggtgctggaacattccccaaggt
cctcagaaagggtgcgttcatatagactcttccataccgcactctaatcg
ataagcaccagacgaagccacaacagttctaattactggctataagactc
ctgaaaaacaatcactttcttgcaaagaaacttttcacttggcagaaagg
gaaatcaatcctagcttcttactggctgagctctccccatcatatagaat
aatgctctggacagaaagcagccatgcaaacagcagccacagaaactatg
agaacctgggtagagagtgtgtcgattcggcacctctgggaaatcagaag
aggagactctttaatttaatctacctttgactctaaagcggctccattgt
ctttgttcttcagagagaggtaagctacaatcagaaaaagtgtccagata
gctatctgcatatgacccttcccctgctcatatctgcaattgtaagttta
gtcgtgaatacatgaaaacagatatttactagacacccgaggggtgaaga
aaaggctaaggaacctcctgcagctgtctattgataagtcatattgatga
ccagcttgggatgaactcattgacctttgaaaatccccattgtctatgcc
accaaacacctccaatttagccaggcttgtggctgaatgtcaggtggatg
agcaggctcagagcaggaatggatgctagatggacctataataaacatga
cagctatcttcctgtcattcctactgcctccgtatatactttggaaattt
ccataa
gaattctaattttcaagcacagtcaaaaatgaaacattctattttaagtt
agtttccctattataacggcattattaagttagctttctcattaatagag
agttacatattgcatgtggtatttttagggttttattcgatagttttcat
cttttgctctgagtgcaaaataaataaataaataaataaataaataaata
aataaatgcaataaaatcccatcatatgtaatgatgggaaggaataaaag
agcagcagaagagaaaagtacctacactactcagacaataaatctgttgt
ggattccctggtggcctttctatagtcacacaagttcattctgggtccct
ccttttgttatttaatactgttgagacgacattgtgtctggggcccattt
ctactctaatcagttttatagaagaattatttttctgtgcctttaactaa
ctgtatcaggagacatttccccattggtcattccctgtgacatcacacag
atctccagacagtttcgaccacaggaaaacaaagaaacgctgtgtcatcc
tcagttgcagatctgtccaggggggtggggtggggggtaaatcagatcct
ccaatggtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_171474939_171476042
seq2: B6Ng01-218G01.b_43_1148

seq1  GAATTCCACAAATATGTACAACTAGCATACATTTAAAACAAAATGAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAAATATGTACAACTAGCATACATTTAAAACAAAATGAAGGT  50

seq1  GCTGGATAGGTGGCTCGGTGGTGAAGAGCACTGACCACTCTTCCAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATAGGTGGCTCGGTGGTGAAGAGCACTGACCACTCTTCCAGAAGA  100

seq1  GCCCGAGTTCTGTCCCTTTAATCATATGTAAAGTACAGATATGAAAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGAGTTCTGTCCCTTTAATCATATGTAAAGTACAGATATGAAAATAG  150

seq1  AAAGAACCTCTATGCTTTGGCCTATGTAGACTACTCCTCAAGAAATCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCTCTATGCTTTGGCCTATGTAGACTACTCCTCAAGAAATCACC  200

seq1  AAAGTCGTTGTTTATTTTGTGCGATTTTAATCAATACTTTCAATATGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCGTTGTTTATTTTGTGCGATTTTAATCAATACTTTCAATATGCTC  250

seq1  ACTTTATGGAGATGGCTACTGCTAGTTAGCAAATTAAAAATAAATCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATGGAGATGGCTACTGCTAGTTAGCAAATTAAAAATAAATCTGTT  300

seq1  TTTCCTTTGCCTCTTTCCCTCCATTCAGGTGCTGGAACATTCCCCAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGCCTCTTTCCCTCCATTCAGGTGCTGGAACATTCCCCAAGGT  350

seq1  CCTCAGAAAGGGTGCGTTCATATAGACTCTTCCATACCGCACTCTAATCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAAGGGTGCGTTCATATAGACTCTTCCATACCGCACTCTAATCG  400

seq1  ATAAGCACCAGACGAAGCCACAACAGTTCTAATTACTGGCTATAAGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCACCAGACGAAGCCACAACAGTTCTAATTACTGGCTATAAGACTC  450

seq1  CTGAAAAACAATCACTTTCTTGCAAAGAAACTTTTCACTTGGCAGAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAACAATCACTTTCTTGCAAAGAAACTTTTCACTTGGCAGAAAGG  500

seq1  GAAATCAATCCTAGCTTCTTACTGGCTGAGCTCTCCCCATCATATAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAATCCTAGCTTCTTACTGGCTGAGCTCTCCCCATCATATAGAAT  550

seq1  AATGCTCTGGACAGAAAGCAGCCATGCAAACAGCAGCCACAGAAACTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTGGACAGAAAGCAGCCATGCAAACAGCAGCCACAGAAACTATG  600

seq1  AGAACCTGGGTAGAGAGTGTGTCGATTCGGCACCTCTGGGAAATCAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTGGGTAGAGAGTGTGTCGATTCGGCACCTCTGGGAAATCAGAAG  650

seq1  AGGAGACTCTTTAATTTAATCTACCTTTGACTCTAAAGCGGCTCCATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTCTTTAATTTAATCTACCTTTGACTCTAAAGCGGCTCCATTGT  700

seq1  CTTTGTTCTTCAGAGAGAGGTAAGCTACAATCAGAAAAAGTGTCCAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTTCAGAGAGAGGTAAGCTACAATCAGAAAAAGTGTCCAGATA  750

seq1  GCTATCTGCATATGACCCTTCCCCTGCTCATATCTGCAATTGTAAGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTGCATATGACCCTTCCCCTGCTCATATCTGCAATTGTAAGTTTA  800

seq1  GTCGTGAATACATGAAAACAGATATTTACTAGACTTCACTAGGGGTGAAG  850
      ||||||||||||||||||||||||||||||||||  | | ||||||||||
seq2  GTCGTGAATACATGAAAACAGATATTTACTAGAC-ACCCGAGGGGTGAAG  849

seq1  AAAAGGCTAAGGAAACCTCCTGCAGCTGTCTATTGATAAGTCATATTGAT  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTAAGG-AACCTCCTGCAGCTGTCTATTGATAAGTCATATTGAT  898

seq1  GACCAGCTTGGGATGAACTCATTGACCTTTGAAAAATCCCCATTGTCTAT  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GACCAGCTTGGGATGAACTCATTGACCTTTG-AAAATCCCCATTGTCTAT  947

seq1  GCCACCAAACACCTCCAATTAAGCCAGGCTTGTGGCTGAATGTCAGGTGG  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCCACCAAACACCTCCAATTTAGCCAGGCTTGTGGCTGAATGTCAGGTGG  997

seq1  ATGAGCAGGCTCAGAGCAGGAATGGATGCTAGATGGACCTAT-ATAAACA  1049
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGAGCAGGCTCAGAGCAGGAATGGATGCTAGATGGACCTATAATAAACA  1047

seq1  TGACAGCTATCTCCCTGTTATTCCTAATG-CTTCGTATATAC-ATGGAA-  1096
      |||||||||||| ||||| ||||||| || || |||||||||  ||||| 
seq2  TGACAGCTATCTTCCTGTCATTCCTACTGCCTCCGTATATACTTTGGAAA  1097

seq1  -TTTCATAA  1104
       || |||||
seq2  TTTCCATAA  1106

seq1: chr2_171635481_171636068
seq2: B6Ng01-218G01.g_64_651 (reverse)

seq1  ACCCCCCACCCCACCCCCCTGGACAGATCTGCAACTGAGGATGACACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCACCCCACCCCCCTGGACAGATCTGCAACTGAGGATGACACAGC  50

seq1  GTTTCTTTGTTTTCCTGTGGTCGAAACTGTCTGGAGATCTGTGTGATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGTTTTCCTGTGGTCGAAACTGTCTGGAGATCTGTGTGATGTC  100

seq1  ACAGGGAATGACCAATGGGGAAATGTCTCCTGATACAGTTAGTTAAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAATGACCAATGGGGAAATGTCTCCTGATACAGTTAGTTAAAGGC  150

seq1  ACAGAAAAATAATTCTTCTATAAAACTGATTAGAGTAGAAATGGGCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAATAATTCTTCTATAAAACTGATTAGAGTAGAAATGGGCCCCA  200

seq1  GACACAATGTCGTCTCAACAGTATTAAATAACAAAAGGAGGGACCCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAATGTCGTCTCAACAGTATTAAATAACAAAAGGAGGGACCCAGAA  250

seq1  TGAACTTGTGTGACTATAGAAAGGCCACCAGGGAATCCACAACAGATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTGTGTGACTATAGAAAGGCCACCAGGGAATCCACAACAGATTTA  300

seq1  TTGTCTGAGTAGTGTAGGTACTTTTCTCTTCTGCTGCTCTTTTATTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGAGTAGTGTAGGTACTTTTCTCTTCTGCTGCTCTTTTATTCCTT  350

seq1  CCCATCATTACATATGATGGGATTTTATTGCATTTATTTATTTATTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCATTACATATGATGGGATTTTATTGCATTTATTTATTTATTTATT  400

seq1  TATTTATTTATTTATTTATTTTGCACTCAGAGCAAAAGATGAAAACTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTATTTATTTTGCACTCAGAGCAAAAGATGAAAACTATC  450

seq1  GAATAAAACCCTAAAAATACCACATGCAATATGTAACTCTCTATTAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAACCCTAAAAATACCACATGCAATATGTAACTCTCTATTAATGA  500

seq1  GAAAGCTAACTTAATAATGCCGTTATAATAGGGAAACTAACTTAAAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTAACTTAATAATGCCGTTATAATAGGGAAACTAACTTAAAATAG  550

seq1  AATGTTTCATTTTTGACTGTGCTTGAAAATTAGAATTC  588
      ||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCATTTTTGACTGTGCTTGAAAATTAGAATTC  588