BAC Information

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BAC

Clone NameB6Ng01-219B22
Chromosome2 (Build37)
Map Location 144,896,609 - 145,076,356
singlet/doubletdoublet
Overlap geneSlc24a3
Upstream gene4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneLOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219B22.bB6Ng01-219B22.g
ACCGA035057GA035058
length510854
definitionB6Ng01-219B22.b B6Ng01-219B22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,896,609 - 144,897,124)(145,075,453 - 145,076,356)
sequence
acaaatcaagggctcctgctctcagatcactggacttttaaaatctatga
tattcctacagttccagactctcctggctgtttgttctgtcaaaattgag
aggtcctgagatattttcatcttggtgagaatatgtagtatcgtttgtct
tttctgagtatgtttgcatttaacaattgtttctgttgcatgtagaactt
ctcttttgataatttgaaagatggagagaacatacttatgttcaaactgc
tggaataaagtggaaatagttggagatcagctatcctctgaggtggatga
aggagaaaaggcaccgaagttttagtagacaaggaaaaagaaactgtagg
aaagcaggacagtgatactaccagagaaagtctattcaagaggaactgga
accaagtgggtaatgctcacctccaagtggggcatatatagaaacttcat
aggagacaaccaaggcacagaaaagtagacagaggagggtgaagaggggg
atgggaggaa
gaattctctggcaagctaatctggtaaaaatggcttctagttgagcaaga
gacagtatttcaagggaaaatggtagagagtgatagggcaacacacacac
acacacacacacacacacacacacacacacacacacacacagagagagag
agagagagagagagagagagagagagagagagaagagagagagagagaga
ggcagagatagagagacagagacagagagaaggcaaatgtatctacaaag
agaagttaaagttgtttaaccttgagcaatgatttatagatttttcagcc
tttaaatttcattttttttctgggttcaataccagcaatgataacactga
ggtggttacaactggttgttcctaatgtttttcgtgtgtttgatagaaat
atattcaatgtgatttttgtaatttttatctgtacaaccttacttttaca
aggtagctgcaagaaaacataagcttgcatttgagtcagcattaagttcc
tctttgtccaagtagataatgtgaagctcaggttatctgtgcacatctac
acagtgtgtatctattgggggagccacttgcttctagtccatcacttggt
tggttgttattccatctgaatattgatcttcatataaggattacactgag
gttcaggcttcatacattggtcatatccagtcctgattactagtcaactc
tgatgttactgtttaaattcctaacaagacgatcttgtatgccttctgtt
gtcttccaccatactactcgtgaccactccatcttattctctgtcctatc
tgccaatccacttactcttagtatatagttctgatcagtcatagcatgat
ctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_144896609_144897124
seq2: B6Ng01-219B22.b_47_562

seq1  GAATTCACAAATCAAGGGCTCCTGCTCTCAGATCACTGGACTTTTAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAATCAAGGGCTCCTGCTCTCAGATCACTGGACTTTTAAAAT  50

seq1  CTATGATATTCCTACAGTTCCAGACTCTCCTGGCTGTTTGTTCTGTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATATTCCTACAGTTCCAGACTCTCCTGGCTGTTTGTTCTGTCAAA  100

seq1  ATTGAGAGGTCCTGAGATATTTTCATCTTGGTGAGAATATGTAGTATCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAGGTCCTGAGATATTTTCATCTTGGTGAGAATATGTAGTATCGT  150

seq1  TTGTCTTTTCTGAGTATGTTTGCATTTAACAATTGTTTCTGTTGCATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTTCTGAGTATGTTTGCATTTAACAATTGTTTCTGTTGCATGTA  200

seq1  GAACTTCTCTTTTGATAATTTGAAAGATGGAGAGAACATACTTATGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCTCTTTTGATAATTTGAAAGATGGAGAGAACATACTTATGTTCA  250

seq1  AACTGCTGGAATAAAGTGGAAATAGTTGGAGATCAGCTATCCTCTGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGGAATAAAGTGGAAATAGTTGGAGATCAGCTATCCTCTGAGGT  300

seq1  GGATGAAGGAGAAAAGGCACCGAAGTTTTAGTAGACAAGGAAAAAGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGGAGAAAAGGCACCGAAGTTTTAGTAGACAAGGAAAAAGAAAC  350

seq1  TGTAGGAAAGCAGGACAGTGATACTACCAGAGAAAGTCTATTCAAGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAAAGCAGGACAGTGATACTACCAGAGAAAGTCTATTCAAGAGGA  400

seq1  ACTGGAACCAAGTGGGTAATGCTCACCTCCAAGTGGGGCATATATAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAACCAAGTGGGTAATGCTCACCTCCAAGTGGGGCATATATAGAAA  450

seq1  CTTCATAGGAGACAACCAAGGCACAGAAAAGTAGACAGAGGAGGGTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAGGAGACAACCAAGGCACAGAAAAGTAGACAGAGGAGGGTGAAG  500

seq1  AGGGGGATGGGAGGAA  516
      ||||||||||||||||
seq2  AGGGGGATGGGAGGAA  516

seq1: chr2_145075453_145076356
seq2: B6Ng01-219B22.g_66_919 (reverse)

seq1  AGAGATCAATGGCTTATGGACTGATCAGAAACTATATAACCTAGGAGGTA  50
      ||||||| |||   ||| |||||||||| |||||||||  ||| || |||
seq2  AGAGATC-ATG--CTAT-GACTGATCAG-AACTATATA--CTAAGA-GTA  42

seq1  AGTGGGAATTGGGCAGATAGGGACCAGAAGAAATAAGATGGAGTGGGTTC  100
      |||||  ||| ||||||||||   ||||   |||||||||||||||  ||
seq2  AGTGG--ATT-GGCAGATAGG--ACAGA--GAATAAGATGGAGTGG--TC  83

seq1  ACGGAGTAGGTATGGTGGAAGACAACAAGAAAGGCATACCAAGATCCGTC  150
      || ||||| ||||||||||||||||||   |||||||| |||||| ||||
seq2  AC-GAGTA-GTATGGTGGAAGACAACA--GAAGGCATA-CAAGAT-CGTC  127

seq1  TGTTTAGGAATTTAAACAGTAACATCAGAGTTGACTAGTTTAATCCAGGA  200
      |  |||||||||||||||||||||||||||||||||||  |||| |||||
seq2  TTGTTAGGAATTTAAACAGTAACATCAGAGTTGACTAG--TAAT-CAGGA  174

seq1  CTGGATATGACCAATGTATGAAGCCTGAAAAACCTCAGTTTGTAATCCTT  250
      |||||||||||||||||||||||||||   ||||||||  |||||||| |
seq2  CTGGATATGACCAATGTATGAAGCCTG---AACCTCAG--TGTAATCC-T  218

seq1  TATATGAAAGATCAATATTCAGATGGGAATAAACAACCAACCCAAAGGTG  300
      |||||| ||||||||||||||||| ||||| |||||||||||   | |||
seq2  TATATG-AAGATCAATATTCAGAT-GGAAT-AACAACCAACC---AAGTG  262

seq1  ATGGGACTTAGAAGCCAAGTGGGGCTCCCCCCCCAATAGATACACACTGT  350
      || |||| |||||| |||||||     | |||||||||||||||||||||
seq2  AT-GGAC-TAGAAG-CAAGTGG-----CTCCCCCAATAGATACACACTGT  304

seq1  GTAGATGTGCACAGATAACCTGAGCTTCACATTATCTACTTTGGACAAAG  400
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTAGATGTGCACAGATAACCTGAGCTTCACATTATCTAC-TTGGACAAAG  353

seq1  AGGAACTTAATGCTGACTCAAATGCAAGCTTATGTTTTTCTTGCAGCTAC  450
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGAACTTAATGCTGACTCAAATGCAAGCTTATG-TTTTCTTGCAGCTAC  402

seq1  CTTGTAAAAGTAAGGTTGTACAGATAAAAATTACAAAAATCACATTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAAAGTAAGGTTGTACAGATAAAAATTACAAAAATCACATTGAAT  452

seq1  ATATTTCTATCAAACACACGAAAAACATTAGGAACAACCAGTTGTAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTATCAAACACACGAAAAACATTAGGAACAACCAGTTGTAACCA  502

seq1  CCTCAGTGTTATCATTGCTGGTATTGAACCCAGAAAAAAAATGAAATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGTTATCATTGCTGGTATTGAACCCAGAAAAAAAATGAAATTTA  552

seq1  AAGGCTGAAAAATCTATAAATCATTGCTCAAGGTTAAACAACTTTAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGAAAAATCTATAAATCATTGCTCAAGGTTAAACAACTTTAACTT  602

seq1  CTCTTTGTAGATACATTTGCCTTCTCTCTGTCTCTGTCTCTCTATCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTAGATACATTTGCCTTCTCTCTGTCTCTGTCTCTCTATCTCTG  652

seq1  CCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  750
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  CCTCTCTCTCTCTCTCTCT--TCTCTCTCTCTCTCTCTCTCTCTCTCTCT  700

seq1  CTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  750

seq1  GTGTGTGTGTGTGTTGCCCTATCACTCTCTACCATTTTCCCTTGAAATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTTGCCCTATCACTCTCTACCATTTTCCCTTGAAATAC  800

seq1  TGTCTCTTGCTCAACTAGAAGCCATTTTTACCAGATTAGCTTGCCAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTGCTCAACTAGAAGCCATTTTTACCAGATTAGCTTGCCAGAGA  850

seq1  ATTC  904
      ||||
seq2  ATTC  854