BAC Information

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BAC

Clone NameB6Ng01-225A01
Chromosome2 (Build37)
Map Location 32,049,833 - 32,114,757
singlet/doubletdoublet
Overlap gene5830434P21Rik, Pomt1, Uck1
Upstream geneGpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3
Downstream geneLOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225A01.bB6Ng01-225A01.g
ACCGA039307GA039308
length1,172697
definitionB6Ng01-225A01.b B6Ng01-225A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,113,589 - 32,114,757)(32,049,833 - 32,050,529)
sequence
gaattccatgagcctggagtgactcaagatttttgctagagccacttagg
aaggaggagccaggagatgttgaggatcgcttcttgatgtgttgaaatct
ctgcctggcaccttgttgctgaggagccctttgtacaccctacctaccgc
ctgcctgacctttggattccccaagctgtctcggggcagtcagtcttcag
ggaggccagttgtagaaacagaggttaatctggggctcaggccttggagc
ttcctggcctggtaggggcctgtgttcctgaaggtttaagctttcctagg
gactcctgaaggtcagagaataggactcttaactttgttttgccagatac
agaggagcagaggctcaaatgatctctttcccccagtgtcagccaatcag
aaagtctttgttccagtttctggtgggacaaccttacccttcatcctggg
gtgtgctgtggggtcctcagcacccctggctcccagctgcgctgcccttg
ggcagaggtggtcctcctcctctgctgcaccagagcaaatgggcagtttg
ggcttctcctgtttttgtagatgcttttgataatgatctgatgcacaaga
ccctgaaaaacattgttgaaggcaaaactgtcgaggtccctacctatgat
tttgtgacccactcaaggtaagcaggtggttcctgggagggctgtcacac
ccagtcccgtggtgggtcccatcgcagtctgtttccatggactgtcctct
actcaggccccttgttactaatgtgagcgggccatcaagcagggcctagc
ctggtctctccctggcaggttaccagagaccactgtggtctacccagctg
atgtggttctgttcgagggcatcttggtattctacacccaggagatccgg
gacatgttccacctgcgcctctttgtggacacagactctgatgttaggct
gtctcgaagaggtaaggcctctgggtccctggctggggttggggttttcc
agagtcccaagaagatggcatatgatggtgcttgttcctgtttgctgcag
ttcttccggaatgttgcaacgagaagggaccctggagcagaaattctgac
ttcagtacacccggctttgtttgaaaccaggcttggaggaagtctgcctg
ccgtaattgctgatgcattcaa
gaattctcatttaccatataattggagccatcattacaaaatctcagtca
ttgatcctgtatttcagatgtgttcaccacagtcatcagagaaccagact
acggtggaacgaagctcttttccccttcctcagctccgcctggaaccccg
tgttcctttcagacagttccagatgaacgaccaagatgggtgaggctgtg
accctgtggccgtgtgtgtcagtgtgggacagttcatgcgtgagtgctct
gtgctctggagactggggtgggcggcaggacttggacccagcaaggagcg
tggtctgcagggctaactcctgcagtgcaggagtctggtagcactgtggt
ggggttggcagtgagcatgtggtactgtggatggaaccgaaccgtagcaa
gaatgcaattgttcactgcaggtttcttctaaggaagtagctcagatatt
cactcagacaccagaggtggaactcgtttttggaaagtgactgtttgcac
ttacaggttgacatgagcccatcatcttttgtctgtctcaccaggaaaga
aaggccaggcgtggcacggccagtgcgcccactgaggcagctggtggaga
gggcaccaaggcccaccatcatcaacgcggaaaacctgaagggcttggat
gatctggacactgatgcggatgatgggtgggcaggtgagtgggtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_32113589_32114757
seq2: B6Ng01-225A01.b_45_1216 (reverse)

seq1  TTGAATGCATAAAGGCAATACCGGCAGGCAGAACTCCTCAAAGGCTGGTT  50
      |||||||||| |  |||||  |||||||||||  ||||| ||| ||||||
seq2  TTGAATGCATCA--GCAATTACGGCAGGCAGACTTCCTCCAAGCCTGGTT  48

seq1  TC--ACAAAGGC-GGTGTACTG-AGTCAGGA--TCTGCTCCA-GGTCCCT  93
      ||  |||||| | ||||||||| |||||| |  ||||||||| |||||||
seq2  TCAAACAAAGCCGGGTGTACTGAAGTCAGAATTTCTGCTCCAGGGTCCCT  98

seq1  TCCTCGTTGC-ACATCCCGG-AGAACTGCAGC-AACAGGAACAAGGCACC  140
      | |||||||| |||| |||| ||||||||||| ||||||||||| |||||
seq2  T-CTCGTTGCAACATTCCGGAAGAACTGCAGCAAACAGGAACAA-GCACC  146

seq1  ATCATATGCCATCCTCCTTGGGACTCCTGGAAAACCCCAACCCCAGCCAG  190
      |||||||||||| || ||||||||| ||||||||||||||||||||||||
seq2  ATCATATGCCAT-CTTCTTGGGACT-CTGGAAAACCCCAACCCCAGCCAG  194

seq1  GGACCCAGAGGCCCTTACCTCTTCGAGACAGCCTAACATCAGAGTCTGTG  240
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAGAGG-CCTTACCTCTTCGAGACAGCCTAACATCAGAGTCTGTG  243

seq1  TCCACAAAGAGGCGCAGGTGGAACATGTCCCGGATCTCCTGGGTGTAGAA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAAGAGGCGCAGGTGGAACATGTCCCGGATCTCCTGGGTGTAGAA  293

seq1  TACCAAGATGCCCTCGAACAGAACCACATCAGCTGGGTAGACCACAGTGG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGATGCCCTCGAACAGAACCACATCAGCTGGGTAGACCACAGTGG  343

seq1  TCTCTGGTAACCTGCCAGGGAGAGACCAGGCTAGGCCCTGCTTGATGGCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTAACCTGCCAGGGAGAGACCAGGCTAGGCCCTGCTTGATGGCC  393

seq1  CGCTCACATTAGTAACAAGGGGCCTGAGTAGAGGACAGTCCATGGAAACA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCACATTAGTAACAAGGGGCCTGAGTAGAGGACAGTCCATGGAAACA  443

seq1  GACTGCGATGGGACCCACCACGGGACTGGGTGTGACAGCCCTCCCAGGAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCGATGGGACCCACCACGGGACTGGGTGTGACAGCCCTCCCAGGAA  493

seq1  CCACCTGCTTACCTTGAGTGGGTCACAAAATCATAGGTAGGGACCTCGAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCTTACCTTGAGTGGGTCACAAAATCATAGGTAGGGACCTCGAC  543

seq1  AGTTTTGCCTTCAACAATGTTTTTCAGGGTCTTGTGCATCAGATCATTAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGCCTTCAACAATGTTTTTCAGGGTCTTGTGCATCAGATCATTAT  593

seq1  CAAAAGCATCTACAAAAACAGGAGAAGCCCAAACTGCCCATTTGCTCTGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCATCTACAAAAACAGGAGAAGCCCAAACTGCCCATTTGCTCTGG  643

seq1  TGCAGCAGAGGAGGAGGACCACCTCTGCCCAAGGGCAGCGCAGCTGGGAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAGAGGAGGAGGACCACCTCTGCCCAAGGGCAGCGCAGCTGGGAG  693

seq1  CCAGGGGTGCTGAGGACCCCACAGCACACCCCAGGATGAAGGGTAAGGTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGTGCTGAGGACCCCACAGCACACCCCAGGATGAAGGGTAAGGTT  743

seq1  GTCCCACCAGAAACTGGAACAAAGACTTTCTGATTGGCTGACACTGGGGG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACCAGAAACTGGAACAAAGACTTTCTGATTGGCTGACACTGGGGG  793

seq1  AAAGAGATCATTTGAGCCTCTGCTCCTCTGTATCTGGCAAAACAAAGTTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATCATTTGAGCCTCTGCTCCTCTGTATCTGGCAAAACAAAGTTA  843

seq1  AGAGTCCTATTCTCTGACCTTCAGGAGTCCCTAGGAAAGCTTAAACCTTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCTATTCTCTGACCTTCAGGAGTCCCTAGGAAAGCTTAAACCTTC  893

seq1  AGGAACACAGGCCCCTACCAGGCCAGGAAGCTCCAAGGCCTGAGCCCCAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACAGGCCCCTACCAGGCCAGGAAGCTCCAAGGCCTGAGCCCCAG  943

seq1  ATTAACCTCTGTTTCTACAACTGGCCTCCCTGAAGACTGACTGCCCCGAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCTCTGTTTCTACAACTGGCCTCCCTGAAGACTGACTGCCCCGAG  993

seq1  ACAGCTTGGGGAATCCAAAGGTCAGGCAGGCGGTAGGTAGGGTGTACAAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTGGGGAATCCAAAGGTCAGGCAGGCGGTAGGTAGGGTGTACAAA  1043

seq1  GGGCTCCTCAGCAACAAGGTGCCAGGCAGAGATTTCAACACATCAAGAAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCTCAGCAACAAGGTGCCAGGCAGAGATTTCAACACATCAAGAAG  1093

seq1  CGATCCTCAACATCTCCTGGCTCCTCCTTCCTAAGTGGCTCTAGCAAAAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCCTCAACATCTCCTGGCTCCTCCTTCCTAAGTGGCTCTAGCAAAAA  1143

seq1  TCTTGAGTCACTCCAGGCTCATGGAATTC  1169
      |||||||||||||||||||||||||||||
seq2  TCTTGAGTCACTCCAGGCTCATGGAATTC  1172

seq1: chr2_32049833_32050529
seq2: B6Ng01-225A01.g_65_761

seq1  GAATTCTCATTTACCATATAATTGGAGCCATCATTACAAAATCTCAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTACCATATAATTGGAGCCATCATTACAAAATCTCAGTCA  50

seq1  TTGATCCTGTATTTCAGATGTGTTCACCACAGTCATCAGAGAACCAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCTGTATTTCAGATGTGTTCACCACAGTCATCAGAGAACCAGACT  100

seq1  ACGGTGGAACGAAGCTCTTTTCCCCTTCCTCAGCTCCGCCTGGAACCCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGGAACGAAGCTCTTTTCCCCTTCCTCAGCTCCGCCTGGAACCCCG  150

seq1  TGTTCCTTTCAGACAGTTCCAGATGAACGACCAAGATGGGTGAGGCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTTCAGACAGTTCCAGATGAACGACCAAGATGGGTGAGGCTGTG  200

seq1  ACCCTGTGGCCGTGTGTGTCAGTGTGGGACAGTTCATGCGTGAGTGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTGGCCGTGTGTGTCAGTGTGGGACAGTTCATGCGTGAGTGCTCT  250

seq1  GTGCTCTGGAGACTGGGGTGGGCGGCAGGACTTGGACCCAGCAAGGAGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTGGAGACTGGGGTGGGCGGCAGGACTTGGACCCAGCAAGGAGCG  300

seq1  TGGTCTGCAGGGCTAACTCCTGCAGTGCAGGAGTCTGGTAGCACTGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGCAGGGCTAACTCCTGCAGTGCAGGAGTCTGGTAGCACTGTGGT  350

seq1  GGGGTTGGCAGTGAGCATGTGGTACTGTGGATGGAACCGAACCGTAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGGCAGTGAGCATGTGGTACTGTGGATGGAACCGAACCGTAGCAA  400

seq1  GAATGCAATTGTTCACTGCAGGTTTCTTCTAAGGAAGTAGCTCAGATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAATTGTTCACTGCAGGTTTCTTCTAAGGAAGTAGCTCAGATATT  450

seq1  CACTCAGACACCAGAGGTGGAACTCGTTTTTGGAAAGTGACTGTTTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGACACCAGAGGTGGAACTCGTTTTTGGAAAGTGACTGTTTGCAC  500

seq1  TTACAGGTTGACATGAGCCCATCATCTTTTGTCTGTCTCACCAGGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGTTGACATGAGCCCATCATCTTTTGTCTGTCTCACCAGGAAAGA  550

seq1  AAGGCCAGGCGTGGCACGGCCAGTGCGCCCACTGAGGCAGCTGGTGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGGCGTGGCACGGCCAGTGCGCCCACTGAGGCAGCTGGTGGAGA  600

seq1  GGGCACCAAGGCCCACCATCATCAACGCGGAAAACCTGAAGGGCTTGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCAAGGCCCACCATCATCAACGCGGAAAACCTGAAGGGCTTGGAT  650

seq1  GATCTGGACACTGATGCGGATGATGGGTGGGCAGGTGAGTGGGTGGA  697
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGACACTGATGCGGATGATGGGTGGGCAGGTGAGTGGGTGGA  697