BAC Information

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BAC

Clone NameB6Ng01-225O04
Chromosome2 (Build37)
Map Location 115,598,998 - 115,783,520
singlet/doubletdoublet
Overlap geneBC052040, Mrg1
Upstream geneLOC100043222, LOC100043232, LOC100043236
Downstream geneG630016G05Rik, 2810405F15Rik, LOC433464, Tmco5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225O04.bB6Ng01-225O04.g
ACCGA039967GA039968
length1,2121,159
definitionB6Ng01-225O04.b B6Ng01-225O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,598,998 - 115,600,214)(115,782,347 - 115,783,520)
sequence
gaattctgaacatttgccctgtatattaagatatcttctgagatgtggca
caggtctcaaagcaacattcaggtatgtttcctatatactttatgaacat
agactgaaggtaatcttaaaccatattttcagtgcttcttcttttactac
aacccacaccacaaggtcagctggggaattctctaccatggagtcatgtt
aatccctagtttagcctagaagagatgttgacatacctgttgtcattgtg
atctgtacatacgtcatcgctgtgttcgctccaggtcattctgaatgacg
ctgttgagttcaccagctctgttgtctgtagaccaccactgatgcagcga
acagtactaagctgcctgaggcctctgttgttgactacatcctccatctt
gccccagagagtgtctgccatgagctaggcactgtcttgtgaagccctga
gaatacgaatggaagtaatatatggcctctgccctcatctgggtcccaga
atttaaaaaaaaaaaaatgaagtgatgaagtagagggtgatctctgggag
atggatacacaaacagcacccagtgttagtgccagcatctcctattcaat
gtttcaaagtaccctaaagtggcaggaagccagaaaaatgcttaactcat
ttgtaaagttgacattatttcatcccttcaagctcttgaccttcctcgtc
tttcttaagagctatttgttaaatttaccaatttggtggtattttattca
taaacagattacttgttcaggagtgactctcatcctagtgtctgttccac
aaagaaatacaaactgcactgtggggaatagcaactgtcaagtcatggtg
acccatgagaagggtcagacacgcactgagtgcctctgagcagtaggagg
ctcagcgccagtactaagcatcctccatccaggtctaagacatggtctca
cacattagctcagctagcccttatgcagtcagctccttcacaaacagtaa
gctgtccaaagtcttgtctttgccagatctgataccccaggaccctgagc
tgctagaaagtcttcagagaagcacaggagcaagccagaaggctattctg
tcatatagttccaaacttctaaactcattttatctttgtcactttatgaa
catgtcatggaaaggcgttaacggccatacatatagtgagttggggttta
ttccatttttac

gaattcacattcctgtactcctccctgcagaactccaggccggctgtctt
gtgtttagcacatgttacatttacatttcctggattgtcagggcatgcat
cttttctaaagagcagagctcatccaaaagttttccatgtgggcctgttg
ttttctggaaagtgccttccctctcacattattttactaagaccattaat
ttttgggttccttttagaaatctataatacatttaaaacatccaaatcat
atatttcaaatgaatgccttgaatggtacttagttatgtataagaacact
ggcaaaccagacttactaactgtttacataagctcaatattaccacaggg
cttctgatatctttccttttctgatttgttcttcagataggaaagaaata
agccaaaacaataatgatctcttaaaaatctaggcaaataacagatattg
tgcacagctcagacactgaaaattatttatctactgtgattaattatttc
tataccagctctattggctaatttgctgtttggcaaaattaaattttgta
ccagcaatttcacaaagtgtagatgtgtttattcacttacctggcaggtt
taaattttaattcaaatgttatttcagtgggagtgtctgaaaaatgaaat
tgtcccattttcaaggagtctgtagcctcccgcagggcactagcaagtaa
accaacctactattctctagcagatttgcaatggacattcaggaagtccc
tggcggccactgaacaaacatcactaaaccaccagctgaacagtattgtg
actatggcctccaacaatgaggtcagtggagatagcagcacacagagtgg
agagttccatcaatctagttaggcccatggtgacttcatttctacttgga
agaattcaagaagagtttctatgacttaaggacagtaaaggaaacactgg
gcagctatgctccagccctcagcatggtacatcagggttgactctggatg
gaagtcagggagctgtgaggaaattgatactgaataacgtccagaactta
aatcagcatggcaggtctcttttgatgactttctaataccaacatgatga
ttgtaaatgcaggcagtacattggcctgtatcgacaaagtgatgacttta
cagtgttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_115598998_115600214
seq2: B6Ng01-225O04.b_48_1259

seq1  GAATTCTGAACATTTGCCCTGTATATTAAGATATCTTCTGAGATGTGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAACATTTGCCCTGTATATTAAGATATCTTCTGAGATGTGGCA  50

seq1  CAGGTCTCAAAGCAACATTCAGGTATGTTTCCTATATACTTTATGAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTCAAAGCAACATTCAGGTATGTTTCCTATATACTTTATGAACAT  100

seq1  AGACTGAAGGTAATCTTAAACCATATTTTCAGTGCTTCTTCTTTTACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAAGGTAATCTTAAACCATATTTTCAGTGCTTCTTCTTTTACTAC  150

seq1  AACCCACACCACAAGGTCAGCTGGGGAATTCTCTACCATGGAGTCATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACACCACAAGGTCAGCTGGGGAATTCTCTACCATGGAGTCATGTT  200

seq1  AATCCCTAGTTTAGCCTAGAAGAGATGTTGACATACCTGTTGTCATTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTAGTTTAGCCTAGAAGAGATGTTGACATACCTGTTGTCATTGTG  250

seq1  ATCTGTACATACGTCATCGCTGTGTTCGCTCCAGGTCATTCTGAATGACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTACATACGTCATCGCTGTGTTCGCTCCAGGTCATTCTGAATGACG  300

seq1  CTGTTGAGTTCACCAGCTCTGTTGTCTGTAGACCACCACTGATGCAGCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGTTCACCAGCTCTGTTGTCTGTAGACCACCACTGATGCAGCGA  350

seq1  ACAGTACTAAGCTGCCTGAGGCCTCTGTTGTTGACTACATCCTCCATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACTAAGCTGCCTGAGGCCTCTGTTGTTGACTACATCCTCCATCTT  400

seq1  GCCCCAGAGAGTGTCTGCCATGAGCTAGGCACTGTCTTGTGAAGCCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGAGAGTGTCTGCCATGAGCTAGGCACTGTCTTGTGAAGCCCTGA  450

seq1  GAATACGAATGGAAGTAATATATGGCCTCTGCCCTCATCTGGGTCCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACGAATGGAAGTAATATATGGCCTCTGCCCTCATCTGGGTCCCAGA  500

seq1  ATTTAAAAAAAAAAAAATGAAGTGATGAAGTAGAGGGTGATCTCTGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAAAAAAAAATGAAGTGATGAAGTAGAGGGTGATCTCTGGGAG  550

seq1  ATGGATACACAAACAGCACCCAGTGTTAGTGCCAGCATCTCCTATTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACACAAACAGCACCCAGTGTTAGTGCCAGCATCTCCTATTCAAT  600

seq1  GTTTCAAAGTACCCTAAAGTGGCAGGAAGCCAGAAAAATGCTTAACTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAAGTACCCTAAAGTGGCAGGAAGCCAGAAAAATGCTTAACTCAT  650

seq1  TTGTAAAGTTGACATTATTTCATCCCTTCAAGCTCTTGACCTTCCTCGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAGTTGACATTATTTCATCCCTTCAAGCTCTTGACCTTCCTCGTC  700

seq1  TTTCTTAAGAGCTATTTGTTAAATTTACCAATTTGGTGGTATTTTATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAGAGCTATTTGTTAAATTTACCAATTTGGTGGTATTTTATTCA  750

seq1  TAAACAGATTACTTGTTCAGGAGTGACTCTCATCCTAGTGTCTGTTCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGATTACTTGTTCAGGAGTGACTCTCATCCTAGTGTCTGTTCCAC  800

seq1  AAAGAAATACAAACTGCACTGTGGGGAATAGCAACTGTCAAGTCATGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATACAAACTGCACTGTGGGGAATAGCAACTGTCAAGTCATGGTG  850

seq1  ACCCATGAGAAGGGTCAGACACGCACTGAGTGCCTCTGAGCAGTAGGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGAGAAGGGTCAGACACGCACTGAGTGCCTCTGAGCAGTAGGAGG  900

seq1  CTCAGCGCCAGTACTAAGCATCCTCCATCCAGGTCTAAGACATGGTCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCGCCAGTACTAAGCATCCTCCATCCAGGTCTAAGACATGGTCTCA  950

seq1  CACATTAGCTCAGGCTAGCCC-TATGCAGTCAGCTCCTTCACAAACAGTA  999
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  CACATTAGCTCA-GCTAGCCCTTATGCAGTCAGCTCCTTCACAAACAGTA  999

seq1  AGCTGTCCAAAGTC-TGTC-TTGCCAGAATCTGATAACCCCAGGACCCTG  1047
      |||||||||||||| |||| ||||||| ||||||| ||||||||||||||
seq2  AGCTGTCCAAAGTCTTGTCTTTGCCAG-ATCTGAT-ACCCCAGGACCCTG  1047

seq1  AGCTGCTAAGGAAGTC-TCAGAGAAGCACAAGGGAGCAAAGCCAG-AGGC  1095
      ||||||| || ||||| |||||||||||||  ||||| ||||||| ||||
seq2  AGCTGCT-AGAAAGTCTTCAGAGAAGCACA--GGAGC-AAGCCAGAAGGC  1093

seq1  TATTCTGTCATTATAGTTCCAAACCTTCTAAAACTCCATATTATCTTTGT  1145
      |||||||||| |||||||||||| ||||| ||||| ||| ||||||||||
seq2  TATTCTGTCA-TATAGTTCCAAA-CTTCT-AAACT-CATTTTATCTTTGT  1139

seq1  CAC-TTATGAACCATGTCATGAAAAAGCCCTAACAGCCCATACATATAAG  1194
      ||| ||||||| ||||||||| ||| ||  |||| | |||||||||||  
seq2  CACTTTATGAA-CATGTCATGGAAAGGCGTTAAC-GGCCATACATATAGT  1187

seq1  TAGTT-GTGTTTATT-CATTTTTAC  1217
       |||| | ||||||| |||||||||
seq2  GAGTTGGGGTTTATTCCATTTTTAC  1212


seq1: chr2_115782347_115783520
seq2: B6Ng01-225O04.g_67_1225 (reverse)

seq1  CCAACACTGTTATAGTCATCTACTTTGTCCCATACAGGCAAATGTACTGC  50
      ||||||||| || ||||||| ||||||| | |||||||| ||||||||||
seq2  CCAACACTG-TAAAGTCATC-ACTTTGT-CGATACAGGCCAATGTACTGC  47

seq1  CTGCATTTACAAACTCATTCATGTTGGTATTTAGAAAGTCCAATCAAAAG  100
      ||||||||||||  ||| ||||||||||| ||||||||||  ||||||||
seq2  CTGCATTTACAA--TCA-TCATGTTGGTA-TTAGAAAGTC--ATCAAAAG  91

seq1  AGACCTGGCATGCTGGATTTAAGTTCTGGACCGTTTATTCAGTATCAATT  150
      ||||||| |||||| ||||||||||||||||   ||||||||||||||||
seq2  AGACCTGCCATGCT-GATTTAAGTTCTGGAC--GTTATTCAGTATCAATT  138

seq1  TCCTCACAGCTCCCCTGACCTTCCATCCAGAGTCAACCCTGATTGTACCA  200
      ||||||||||| |||||| ||||||||||||||||||||||| |||||||
seq2  TCCTCACAGCT-CCCTGA-CTTCCATCCAGAGTCAACCCTGA-TGTACCA  185

seq1  TGCTGAGGGCTGGAGCATAGCTGCCCAGTGTTTCCTTACTTGTCC-TAAG  249
      |||||||||||||||||||||||||||||||||||||   ||||| ||||
seq2  TGCTGAGGGCTGGAGCATAGCTGCCCAGTGTTTCCTTTACTGTCCTTAAG  235

seq1  TCATAGAAACTCTTCTTGAATTCTTCCAAGTAGAAATGAAGTCACCATGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAAACTCTTCTTGAATTCTTCCAAGTAGAAATGAAGTCACCATGG  285

seq1  GCCTAACTAGATTGATGGAACTCTCCACTCTGTGTGCTGCTATCTCCACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACTAGATTGATGGAACTCTCCACTCTGTGTGCTGCTATCTCCACT  335

seq1  GACCTCATTGTTGGAGGCCATAGTCACAATACTGTTCAGCTGGTGGTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCATTGTTGGAGGCCATAGTCACAATACTGTTCAGCTGGTGGTTTA  385

seq1  GTGATGTTTGTTCAGTGGCCGCCAGGGACTTCCTGAATGTCCCATTGCAA  449
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGATGTTTGTTCAGTGGCCGCCAGGGACTTCCTGAATGT-CCATTGCAA  434

seq1  ATCTGCTAGAGAATAGTAGGTTGGTTTACTTGCTAGTGCCCTGCGGGAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTAGAGAATAGTAGGTTGGTTTACTTGCTAGTGCCCTGCGGGAGG  484

seq1  CTACAGACTCCTTGAAAATGGGACAATTTCATTTTTCAGACACTCCCACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGACTCCTTGAAAATGGGACAATTTCATTTTTCAGACACTCCCACT  534

seq1  GAAATAACATTTGAATTAAAATTTAAACCTGCCAGGTAAGTGAATAAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAACATTTGAATTAAAATTTAAACCTGCCAGGTAAGTGAATAAACA  584

seq1  CATCTACACTTTGTGAAATTGCTGGTACAAAATTTAATTTTGCCAAACAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACACTTTGTGAAATTGCTGGTACAAAATTTAATTTTGCCAAACAG  634

seq1  CAAATTAGCCAATAGAGCTGGTATAGAAATAATTAATCACAGTAGATAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAGCCAATAGAGCTGGTATAGAAATAATTAATCACAGTAGATAAA  684

seq1  TAATTTTCAGTGTCTGAGCTGTGCACAATATCTGTTATTTGCCTAGATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCAGTGTCTGAGCTGTGCACAATATCTGTTATTTGCCTAGATTT  734

seq1  TTAAGAGATCATTATTGTTTTGGCTTATTTCTTTCCTATCTGAAGAACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGATCATTATTGTTTTGGCTTATTTCTTTCCTATCTGAAGAACAA  784

seq1  ATCAGAAAAGGAAAGATATCAGAAGCCCTGTGGTAATATTGAGCTTATGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAAGGAAAGATATCAGAAGCCCTGTGGTAATATTGAGCTTATGT  834

seq1  AAACAGTTAGTAAGTCTGGTTTGCCAGTGTTCTTATACATAACTAAGTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTAGTAAGTCTGGTTTGCCAGTGTTCTTATACATAACTAAGTAC  884

seq1  CATTCAAGGCATTCATTTGAAATATATGATTTGGATGTTTTAAATGTATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGGCATTCATTTGAAATATATGATTTGGATGTTTTAAATGTATT  934

seq1  ATAGATTTCTAAAAGGAACCCAAAAATTAATGGTCTTAGTAAAATAATGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTCTAAAAGGAACCCAAAAATTAATGGTCTTAGTAAAATAATGT  984

seq1  GAGAGGGAAGGCACTTTCCAGAAAACAACAGGCCCACATGGAAAACTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAAGGCACTTTCCAGAAAACAACAGGCCCACATGGAAAACTTTT  1034

seq1  GGATGAGCTCTGCTCTTTAGAAAAGATGCATGCCCTGACAATCCAGGAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGCTCTGCTCTTTAGAAAAGATGCATGCCCTGACAATCCAGGAAA  1084

seq1  TGTAAATGTAACATGTGCTAAACACAAGACAGCCGGCCTGGAGTTCTGCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGTAACATGTGCTAAACACAAGACAGCCGGCCTGGAGTTCTGCA  1134

seq1  GGGAGGAGTACAGGAATGTGAATTC  1174
      |||||||||||||||||||||||||
seq2  GGGAGGAGTACAGGAATGTGAATTC  1159


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