BAC Information

Click to search

BAC

Clone NameB6Ng01-227G22
Chromosome2 (Build37)
Map Location 180,144,027 - 180,145,143
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283
Downstream geneSlco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227G22.bB6Ng01-227G22.g
ACCGA041103GA041104
length1,2461,127
definitionB6Ng01-227G22.b B6Ng01-227G22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagcatagtgacacactattggcttattcaaacatcagcagaaaa
attacatgtacgtgcagggtgtcagagttctgtgagttgttgactcagtt
cagatagccctgttatgtcttcacattcccctttatcttatggtcaagat
attcccaggagtgttttaactacggggcatacccaggtttgtttgtttgt
tttttctcagccccaggcagcctctaggctcacaaacaaccagcaatttc
tgagtactttatatgacttacagatcttgaaatgtcatctttctttcaca
tgtatgacatatgatatatgtatgtatgacatatgatatatgtatgtatg
acatatgatatatacatgtatgtatgatataaatatgtataaatatatac
atatatttcttttggactcaaggtcttactgtagtgctagcttgcctgaa
gtctatggaaaacaggctggccttgagtgctaggattaaaggctgtgtgt
gctgccacactaatctccattttttttttttttttttataacaaggtctc
tcactgaacctggagctcagtattttggttagcaagctgctgggattccc
ctgtctctgctcacccagagctggtttaaagacacaagccgcactgcttc
tggcaaaaagtgggtgttgggatccaaactcaggtctctgtgcttgtcag
tcacttcacccacagttctgaacccacctgctgttttcattttttttttt
tctttttgaaacaggatcttaaagtaacccaggttggccccaagtttcct
ctatagccaaaggttggcctggaacctcctgagtgcactgccacactcgg
tggctgtctgtgaaagggcaaggctgggattggaagaagtgaactgtttg
cctctatttgctttagcccacgcagaccacgggagatctccaaggaggga
gggtccttcagctgggatgggtgcctggggaatgaggaggccgaggcaga
agcaacagatgttgtggtaacttcttcatgtggaatgcttgggcctgggc
tcccagcattctgggccaggaaagagaagtggtacggcactgatagctca
atttattccctgacttagtctaggctccaaggcaccttcatcaatgcctc
agccacctaaagacgagaggctgttctatggaataggatccagggctcgt
cactgagtgcggtaacaccctggcgcgctgataggaaccttgctga
gaattcaaatgagtgaagccagagcaaggctggcactactctgtcagtgg
agtgtgtaaatctgctaatcctttctttttgctgagtgcctgtcacacac
aagctgcatctccacaggtggcctgtggcagcatagacccactccttcag
cactgtgtcctgatggtggtatctgagacagcctgggcagtctgggggac
ccaaacatctctgagcatcacccccaacacacagtgaactccaggaaagc
agctggatatgtgtgagaaatgaatgttaccgtgtttgagcagttgctga
ggatgtctgggtgtgtccagtctgggatgggacaataacaggcagcaagg
tgaagatgagcaagatgctgaagaccggtgactgtagtgaggctaggagt
cctctcttggaaagaacgggctctggttagcagaggggcaggagcagagc
catgctgtcttcagactgaaccactcacccgacctctctcacctttctcc
caccccagaagaaagtgtttctcatgtatcctgccttagtgaggctctcg
gaccagtacaggtccttatcattcaggaaacacgccagagacacacgtgt
gttatgtcagcactggaagcatgggtgggggcatgtgtgattggttccag
cacagtgggaacaaggtcgtggttctgtgggctaggttggttgttctgag
gctgccacaggtattattcatgcaggtggatcttttcatgactacccaac
cagtgagcgaggatgcttcatcccctcagcacacttcttcatctgctcat
tcacactttctatacacacagagacatacaaacgccacacagatgcacat
cctcctagcaatgtacctctacatacactcacacaggcacacaattatac
ataaggtgcatacctgcatagacgcatacacccaagtgcaccctcacaag
tgcccttgctcacactcatgcacacttacatgtttgtaaacccgacacac
cctggcaacctggaactccgagctgtgttctggaccactgggtcttttgg
tgtaagaagaatactgacatgacattggggaaaatttgttgagggatata
acaaccaaatcacagtcccctcgagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_180144027_180145143
seq2: B6Ng01-227G22.g_66_1192

seq1  GAATTCAAATGAGTGAAGCCAGAGCAAGGCTGGCACTACTCTGTCAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGAGTGAAGCCAGAGCAAGGCTGGCACTACTCTGTCAGTGG  50

seq1  AGTGTGTAAATCTGCTAATCCTTTCTTTTTGCTGAGTGCCTGTCACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTAAATCTGCTAATCCTTTCTTTTTGCTGAGTGCCTGTCACACAC  100

seq1  AAGCTGCATCTCCACAGGTGGCCTGTGGCAGCATAGACCCACTCCTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCATCTCCACAGGTGGCCTGTGGCAGCATAGACCCACTCCTTCAG  150

seq1  CACTGTGTCCTGATGGTGGTATCTGAGACAGCCTGGGCAGTCTGGGGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTCCTGATGGTGGTATCTGAGACAGCCTGGGCAGTCTGGGGGAC  200

seq1  CCAAACATCTCTGAGCATCACCCCCAACACACAGTGAACTCCAGGAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACATCTCTGAGCATCACCCCCAACACACAGTGAACTCCAGGAAAGC  250

seq1  AGCTGGATATGTGTGAGAAATGAATGTTACCGTGTTTGAGCAGTTGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATATGTGTGAGAAATGAATGTTACCGTGTTTGAGCAGTTGCTGA  300

seq1  GGATGTCTGGGTGTGTCCAGTCTGGGATGGGACAATAACAGGCAGCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCTGGGTGTGTCCAGTCTGGGATGGGACAATAACAGGCAGCAAGG  350

seq1  TGAAGATGAGCAAGATGCTGAAGACCGGTGACTGTAGTGAGGCTAGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGAGCAAGATGCTGAAGACCGGTGACTGTAGTGAGGCTAGGAGT  400

seq1  CCTCTCTTGGAAAGAACGGGCTCTGGTTAGCAGAGGGGCAGGAGCAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTGGAAAGAACGGGCTCTGGTTAGCAGAGGGGCAGGAGCAGAGC  450

seq1  CATGCTGTCTTCAGACTGAACCACTCACCCGACCTCTCTCACCTTTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGTCTTCAGACTGAACCACTCACCCGACCTCTCTCACCTTTCTCC  500

seq1  CACCCCAGAAGAAAGTGTTTCTCATGTATCCTGCCTTAGTGAGGCTCTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGAAGAAAGTGTTTCTCATGTATCCTGCCTTAGTGAGGCTCTCG  550

seq1  GACCAGTACAGGTCCTTATCATTCAGGAAACACGCCAGAGACACACGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTACAGGTCCTTATCATTCAGGAAACACGCCAGAGACACACGTGT  600

seq1  GTTATGTCAGCACTGGAAGCATGGGTGGGGGCATGTGTGATTGGTTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTCAGCACTGGAAGCATGGGTGGGGGCATGTGTGATTGGTTCCAG  650

seq1  CACAGTGGGAACAAGGTCGTGGTTCTGTGGGCTAGGTTGGTTGTTCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGGAACAAGGTCGTGGTTCTGTGGGCTAGGTTGGTTGTTCTGAG  700

seq1  GCTGCCACAGGTATTATTCATGCAGGTGGATCTTTTCATGACTACCCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCACAGGTATTATTCATGCAGGTGGATCTTTTCATGACTACCCAAC  750

seq1  CAGTGAGCGAGGATGCTTCATCCCCTCAGGCACACTTCTTCATCTGCTCA  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAGTGAGCGAGGATGCTTCATCCCCTCA-GCACACTTCTTCATCTGCTCA  799

seq1  TTCACAC-TTCTATACACACAGAGACATACAAACGCCACACAGATGCACA  849
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACTTTCTATACACACAGAGACATACAAACGCCACACAGATGCACA  849

seq1  TCCTCCTAGCAATGTACCTCTACATACACTCACACAGGCACACAATTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTAGCAATGTACCTCTACATACACTCACACAGGCACACAATTATA  899

seq1  CAT-AGGTGCATACCTGCATAGACGCATACACCCAAGTGCACCCTCACAA  948
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGTGCATACCTGCATAGACGCATACACCCAAGTGCACCCTCACAA  949

seq1  GTGCCCTTGCTCACACTCATGCACACTTACATGTTTGTAAACCCGACACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTTGCTCACACTCATGCACACTTACATGTTTGTAAACCCGACACA  999

seq1  CCCTGGCAACCTGG-ACTCCGAGCTGTGTTCTGGACCACTGGGTCCTTTG  1047
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  CCCTGGCAACCTGGAACTCCGAGCTGTGTTCTGGACCACTGGGTCTTTTG  1049

seq1  GTGT-AGA--GATACTGACATGACA-TGGGGAAAATTTG-TGAGGG--AT  1090
      |||| |||   |||||||||||||| ||||||||||||| ||||||  ||
seq2  GTGTAAGAAGAATACTGACATGACATTGGGGAAAATTTGTTGAGGGATAT  1099

seq1  AACAACAAAATCACAG-CCCCTCGAGAG  1117
      |||||| ||||||||| |||||||||||
seq2  AACAACCAAATCACAGTCCCCTCGAGAG  1127