BAC Information

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BAC

Clone NameB6Ng01-227K22
Chromosome2 (Build37)
Map Location 112,187,547 - 112,336,441
singlet/doubletdoublet
Overlap geneSlc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven
Upstream geneOlfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3
Downstream geneRyr3, 4930563P21Rik, Fmn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227K22.bB6Ng01-227K22.g
ACCGA041291GA041292
length1,1441,109
definitionB6Ng01-227K22.b B6Ng01-227K22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,187,547 - 112,188,692)(112,335,455 - 112,336,441)
sequence
gaattctcatcgcctccctggatctcgtggccccaattctttccatgtaa
gagccactttattctcaactatggttgtttaatgataaataacatgattt
ctatcagtcatctaaaaatagtgatgatggcagaggtaaccaaacatagg
cttcactttacttaaaagaatgttcctgagatggggctgaagatgtgact
cggtggctaatagcatgtgtgggtcttccagaggagctacgttcagttct
tagcacccaggtcaggaggctcacagccacatataagtccagctcataga
gaactgacacctgacctctgtgagcactcacgtgaacacacaattcaaat
aaatctttaaaagactattcctgacaacttttatatacccctaactttta
taaatgactgtgattttatagagggaggggtcctacatacaagtaacttg
tataactttaaaagttactcgaatccctaccttcttttccttctgttttt
ccccttctttttttttttttttccataaagcttgcatttgaacccagggc
ctcatatgcactaggcatgctctctactgctgagctacattctctagccc
ctgcctgtattttatgagtcattagcagttgatttcacttttggcatcta
ctcatttacctgtgcattactgatgatttattgtctatctgacattggga
atatgaagatgtctcaagacactgataataggtgagaaatccatgagttc
ccatatagtacaatgaatgaagagtggtaaaggtaactgctgggtgccac
gaaagcacagcacatagaaaggaagtttctgtagccagtggcatgtgtct
tgaagataactagttattttgttacgcagagaaggaggctgttgtcttta
ctctgtagtttcaggggattcagtgcccttttctgggctcttgcagtcac
ccttacatataaaagtaaatcaatcttcactcggtatggtggtacatacc
ttttcagtcagcccagaggcagagcagaacgatctgtgagtttgaagcca
gcttgtattatatatctagacagttctaggacagccaagtacataatgag
acctgttctcaaagaaaaaatgtatgtgttgtggggggagggac
gaattcaatgcccactaagatgtccagacacccttcaaagaaacaaaaca
accactcctaaaacttgcatgaaactgtaaaaagatcctaaatactttaa
acaaagaaacgaaagttaaactttaagatcagagtttaagacacactaca
aagtgtaggtaaaaggctaaactgtacagtcctggtttaaaaaaaaaatg
acagcatgtggtttaaatgtgacttactaacattcatgccaccctatgtt
caatcctgccaccaaaaaggagcaagaaaaccccagggatacatgcacat
atccacacccccaaagaaataagccatatacaaaatcaactctaaataaa
acagacttcaaatatgaaacctgaaactatcagaagaaagcatcagagaa
acaccccaggacattgctctgggcaaagctttctttggatctgacctcaa
cagcccaaacaacagaggccaccttgacaaaggggatcatgtcaaggaca
gaggagacaaccaacagagtaggagaacagcctgcgtagggaaggagaag
aaatgtctacaagctgttcgcccagcaaaagatgatcctgcagaatttat
aacgacctcagactactcaaatacaaaaagcagaaagggtctgattaaaa
cagggttgaatcacctgaagggatatgtccccaaagaggagacccaaatg
gccagtgcatatatgaaaaggaatctcagtgtcactcatcatcaaaatca
tgagaacaagctactcacctaacagtatctagaaacttctaaataaatgg
aaaaacaaacaaataaacaacaaccacaaaaaaaaaaaaaacccacacaa
tgaaagatcatctttaatccaacacaggaggcagaggcaggtagatctct
gagtttcaaggcctgcctgcctttggtctacagagtcagtttccagggca
gccaaggtacatgctgagacccttgtctaaaattaagaaaataaataaaa
tattgctacacaaaaaaagactatcacaaaaccgtagttaaataaacagg
ttctaggctctggagttgcgttcaggctgactacatgataagatttatcc
cagcaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_112187547_112188692
seq2: B6Ng01-227K22.b_51_1194

seq1  GAATTCTCATCGCCTCCCTGGATCTCGTGGCCCCAATTCTTTCCATGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCGCCTCCCTGGATCTCGTGGCCCCAATTCTTTCCATGTAA  50

seq1  GAGCCACTTTATTCTCAACTATGGTTGTTTAATGATAAATAACATGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACTTTATTCTCAACTATGGTTGTTTAATGATAAATAACATGATTT  100

seq1  CTATCAGTCATCTAAAAATAGTGATGATGGCAGAGGTAACCAAACATAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGTCATCTAAAAATAGTGATGATGGCAGAGGTAACCAAACATAGG  150

seq1  CTTCACTTTACTTAAAAGAATGTTCCTGAGATGGGGCTGAAGATGTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTTACTTAAAAGAATGTTCCTGAGATGGGGCTGAAGATGTGACT  200

seq1  CGGTGGCTAATAGCATGTGTGGGTCTTCCAGAGGAGCTACGTTCAGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGCTAATAGCATGTGTGGGTCTTCCAGAGGAGCTACGTTCAGTTCT  250

seq1  TAGCACCCAGGTCAGGAGGCTCACAGCCACATATAAGTCCAGCTCATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCCAGGTCAGGAGGCTCACAGCCACATATAAGTCCAGCTCATAGA  300

seq1  GAACTGACACCTGACCTCTGTGAGCACTCACGTGAACACACAATTCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGACACCTGACCTCTGTGAGCACTCACGTGAACACACAATTCAAAT  350

seq1  AAATCTTTAAAAGACTATTCCTGACAACTTTTATATACCCCTAACTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTAAAAGACTATTCCTGACAACTTTTATATACCCCTAACTTTTA  400

seq1  TAAATGACTGTGATTTTATAGAGGGAGGGGTCCTACATACAAGTAACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACTGTGATTTTATAGAGGGAGGGGTCCTACATACAAGTAACTTG  450

seq1  TATAACTTTAAAAGTTACTCGAATCCCTACCTTCTTTTCCTTCTGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTTAAAAGTTACTCGAATCCCTACCTTCTTTTCCTTCTGTTTTT  500

seq1  CCCCTTCTTTTTTTTTTTTTTTCCATAAAGCTTGCATTTGAACCCAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCTTTTTTTTTTTTTTTCCATAAAGCTTGCATTTGAACCCAGGGC  550

seq1  CTCATATGCACTAGGCATGCTCTCTACTGCTGAGCTACATTCTCTAGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATGCACTAGGCATGCTCTCTACTGCTGAGCTACATTCTCTAGCCC  600

seq1  CTGCCTGTATTTTATGAGTCATTAGCAGTTGATTTCACTTTTGGCATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTATTTTATGAGTCATTAGCAGTTGATTTCACTTTTGGCATCTA  650

seq1  CTCATTTACCTGTGCATTACTGATGATTTATTGTCTATCTGACATTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTACCTGTGCATTACTGATGATTTATTGTCTATCTGACATTGGGA  700

seq1  ATATGAAGATGTCTCAAGACACTGATAATAGGTGAGAAATCCATGAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGATGTCTCAAGACACTGATAATAGGTGAGAAATCCATGAGTTC  750

seq1  CCATATAGTACAATGAATGAAGAGTGGTAAAGGTAACTGCTGGGTGCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAGTACAATGAATGAAGAGTGGTAAAGGTAACTGCTGGGTGCCAC  800

seq1  GAAAGCACAGCACATAGAAAGGAAGTTTCTGTAGCCAGTGGCATGTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCACAGCACATAGAAAGGAAGTTTCTGTAGCCAGTGGCATGTGTCT  850

seq1  TGAAGATAACTAGTTA-TTTGTTACGCAGAGAAGGAGGCTG-TGTC-TTA  897
      |||||||||||||||| |||||||||||||||||||||||| |||| |||
seq2  TGAAGATAACTAGTTATTTTGTTACGCAGAGAAGGAGGCTGTTGTCTTTA  900

seq1  CTCTGTAGTTCCAGGGGATTCAGTGCCCTTTTCTGGCCTC-TGCAGTCAC  946
      |||||||||| ||||||||||||||||||||||||| ||| |||||||||
seq2  CTCTGTAGTTTCAGGGGATTCAGTGCCCTTTTCTGGGCTCTTGCAGTCAC  950

seq1  CCTTACATATAAAAGTAAATCAATCTTCACTCGGTATGGTGGTACATACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACATATAAAAGTAAATCAATCTTCACTCGGTATGGTGGTACATACC  1000

seq1  TTTTCAGTTCAGCCCAGGAGGCAGAGGCAGACAGATCTGTGAGTTTGAAG  1046
      ||||||| |||||||| |||||||| |||||  |||||||||||||||||
seq2  TTTTCAG-TCAGCCCA-GAGGCAGA-GCAGAACGATCTGTGAGTTTGAAG  1047

seq1  CCAGCTTGGTATATATATATCTAGACAGTTCTAGGACAGCCAAAGTTACA  1096
      ||||||| |||| ||||||||||||||||||||||||||||||   ||||
seq2  CCAGCTT-GTAT-TATATATCTAGACAGTTCTAGGACAGCCAA--GTACA  1093

seq1  TAAATGAGA-CTG-TCTCAAAAGAAAAAAAGTATGTG-TGTGGGGGGAGG  1143
      | ||||||| ||| |||| |||||||||| ||||||| ||||||||||||
seq2  T-AATGAGACCTGTTCTC-AAAGAAAAAATGTATGTGTTGTGGGGGGAGG  1141

seq1  GAC  1146
      |||
seq2  GAC  1144

seq1: chr2_112335455_112336441
seq2: B6Ng01-227K22.g_352_1178 (reverse)

seq1  TGGTTGCTGGGATTTGAACTCTCGACCTTCAGAAGAGCAGTCGGGTGCTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTACCCACTGAGCCATCTCACCAGCCCCCCTGCCTCAATTTCTAAGGTAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGGATTACACATCTACTTTACCACAGCTGGGTTTATTTATTCATTTAACT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTGTTTGCTGTGATATAATCTTATCATGTAGTTCAGCCTGGAACGCAA  200
         || |||||| |||| ||||||||||||||| ||||||| |||||| |
seq2  ---TGGTTGCTGGGATA-AATCTTATCATGTAG-TCAGCCT-GAACGC-A  43

seq1  ACTCAGAACCCTAGAACCCTGGTTTTATTTTAACTACGTTTTTGTTGTTG  250
      ||||   | ||||||| ||||  |||| |||||||||| ||||| || | 
seq2  ACTCCAGAGCCTAGAA-CCTG--TTTA-TTTAACTACGGTTTTG-TGATA  88

seq1  TTCTTTTTTTGTTGTAGGCATATTTTATTTATTTTCTTATTTTTTAGAC-  299
       |||||||||| |||||  ||||||||||||||||||||  |||||||| 
seq2  GTCTTTTTTTG-TGTAGCAATATTTTATTTATTTTCTTA-ATTTTAGACA  136

seq1  AGGGTCTCAGCATGTAACCTTGGCTGCCCTGGAAACTGACTCTGTAGACC  349
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCAGCATGT-ACCTTGGCTGCCCTGGAAACTGACTCTGTAGACC  185

seq1  --AGGCAGGCAGGCCTTG-AACTCAGAGATCTACCTGCCTCTGCCTCCTG  396
        |||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAGGCAGGCAGGCCTTGAAACTCAGAGATCTACCTGCCTCTGCCTCCTG  235

seq1  TGTTGGATTAAAGGTGATCTTTCATTGTGTGGG-TTTTTTTTTTTTTGTG  445
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  TGTTGGATTAAAGATGATCTTTCATTGTGTGGGTTTTTTTTTTTTTTGTG  285

seq1  GTTGTTGTTTATTTGTTTGTTTTTCCATTTATTTAGAAGTTTCTAGATAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTTATTTGTTTGTTTTTCCATTTATTTAGAAGTTTCTAGATAC  335

seq1  TGTTAGGTGAGTAGCTTGTTCTCATGATTTTGATGATGAGTGACACTGAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGTGAGTAGCTTGTTCTCATGATTTTGATGATGAGTGACACTGAG  385

seq1  ATTCCTTTTCATATATGCACTGGCCATTTGGGTCTCCTCTTTGGGGACAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTTCATATATGCACTGGCCATTTGGGTCTCCTCTTTGGGGACAT  435

seq1  ATCCCTTCAGGTGATTCAACCCTGTTTTAATCAGACCCTTTCTGCTTTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCAGGTGATTCAACCCTGTTTTAATCAGACCCTTTCTGCTTTTT  485

seq1  GTATTTGAGTAGTCTGAGGTCGTTATAAATTCTGCAGGATCATCTTTTGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGAGTAGTCTGAGGTCGTTATAAATTCTGCAGGATCATCTTTTGC  535

seq1  TGGGCGAACAGCTTGTAGACATTTCTTCTCCTTCCCTACGCAGGCTGTTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGAACAGCTTGTAGACATTTCTTCTCCTTCCCTACGCAGGCTGTTC  585

seq1  TCCTACTCTGTTGGTTGTCTCCTCTGTCCTTGACATGATCCCCTTTGTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTCTGTTGGTTGTCTCCTCTGTCCTTGACATGATCCCCTTTGTCA  635

seq1  AGGTGGCCTCTGTTGTTTGGGCTGTTGAGGTCAGATCCAAAGAAAGCTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCCTCTGTTGTTTGGGCTGTTGAGGTCAGATCCAAAGAAAGCTTT  685

seq1  GCCCAGAGCAATGTCCTGGGGTGTTTCTCTGATGCTTTCTTCTGATAGTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGCAATGTCCTGGGGTGTTTCTCTGATGCTTTCTTCTGATAGTT  735

seq1  TCAGGTTTCATATTTGAAGTCTGTTTTATTTAGAGTTGATTTTGTATATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTTCATATTTGAAGTCTGTTTTATTTAGAGTTGATTTTGTATATG  785

seq1  GCTTATTTCTTTGGGGGTGTGGATATGTGCATGTATCCCTGG  987
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTCTTTGGGGGTGTGGATATGTGCATGTATCCCTGG  827