BAC Information

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BAC

Clone NameB6Ng01-228B03
Chromosome2 (Build37)
Map Location 119,807,401 - 119,916,241
singlet/doubletdoublet
Overlap geneMapkbp1, Pla2g4b, Spnb5, Ehd4
Upstream geneLOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga
Downstream genePla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228B03.bB6Ng01-228B03.g
ACCGA041574GA041575
length1,2001,013
definitionB6Ng01-228B03.b B6Ng01-228B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,915,048 - 119,916,241)(119,807,401 - 119,808,406)
sequence
gaattcataattcacaaactgtcagcccctggcaagacctgtgtgccctt
caaccactgaatgtccccaaagcttttttggtaggtggcagaatttaaat
tcaataaagcttgtcttgatttgtgtggagtcccagagccttcggaccca
ggtaaagcgagagcagccccatcctgagctgtgagtggaagagaccagcg
ccctggtgattgatgatgttgtttgatttttaaagaaagaaatgcatttc
attgtgtccaggtatgtttttctcacaagatgtagcctctctgaagaaat
ctctgtaataccttttcttccaagctagacacctcacatcaggagtgcct
atctgggccaggattggtctacttctgcctcttcagtgttctttcccaag
cccacctagtcaggcgccgcaggggctgcctcctactgtaccctgctctg
tggcccagcagaagaacactgtcaccatcacttacgaagtaggaatcaca
gcgcagcagtgaccacatgaccaacagcagcagaaatgaatgaatctgaa
cagcatccctgaatcttcacaaaaacatactccaatccctaattgtctgc
atctggcaacctcagggtcagaaccggggatttaagagaaaatgctaaga
gctcacacccatttcgcagcacttgggaggcagatgcagggggattacca
tgagttcgaagccagtctgaactacatcgtttgttttatggtagtctgtg
taaaacagaatacttacgccaccattcacacttcctatcttactttctaa
ataatggttttaagagaaacacagtgtttgctttactctgaaagcgtgtt
tttattaattggacacacacaggtgaatgtttgatcccggggctgtaact
gtatttgtgtcagtgtccatggagaggtgatgcctgggaggtcttgactt
tcctcctagttgtcttctgcttttctctgcacagttgtcatatatctacc
taaatataatcacaaatgtatgtctcgtgagtctgtctctaaaatgcgtc
cgtattgtttcatgtagaatatggtcagttcacttcttgtacgaagcctc
agagggagcttttctaaggacagcaagctaagaattttctggatcttgcc
tccactcttcccaccgtctggtctgggagaatgcctagcaagctagcttg

gaattcctccatggccagctttagacccatgtctagcaacctctgcctgt
ctgtagtcttgcttttcctctccccctggtgctttcctgactccctcccc
acagcttgccatgggatatgttaggaagcatttaacttgtgggtctgtgg
gtaattgaaggtcaagttgttgcagctgtgtggttccagatgcccatgag
ccagagcaattgatgccgcttttagaattagtgggaagcagaaactgcca
gatgccttggtcatctctaggcatcagggatggctgcgttttcatctgag
gtattgttgggcaagctgattgagtctcttctgttcttgaggagggccta
gtgtaatgctagatctttccctccagctgggcctatttgttgctttagcc
tgtaaccaaccttgttttttaaatcatggagaatgctgagtgaaatcttt
atttttgtaaaacaaagcagagctaccccacatgcaccatgcctgagaga
tgacaggactccatgaacttgaacgacagaaatgaggtcagctgttcacc
tgactccctttatctgtgtagctccagggttataagtttcctctagcaga
tgtctgcccttacctgacctcaggtctgtatggttttgatttcttctctc
aagtaggaaagtgtgacctgtaagtacaaaaacatgggtctcaaggcatg
ctcccctgaattgcttacacccaggacccgcttccttgggccacactttg
agttagtaggctgctggggcagtgagtgggtagggagagggaaatcacac
acacacacacacacaacaccttttctcacttcagagggaaactggctagt
gtcttatttgtaaaattgggatcctggtggcattcaagagcttgtggtga
ggcttaatgagatttagtgaccatggaaagagtggtgtaaggcccataca
gcttcaccggttgtaagggatggctaatgttaacagaacacaaggaattg
tgtaataatcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119915048_119916241
seq2: B6Ng01-228B03.b_46_1245 (reverse)

seq1  CAAGCTTAGC-TGCTAGGCA-TCTCCCAG--CAGAAGGTGGAGAGGAGTG  46
      ||||| |||| ||||||||| ||||||||  |||| ||||| || |||||
seq2  CAAGC-TAGCTTGCTAGGCATTCTCCCAGACCAGACGGTGG-GAAGAGTG  48

seq1  GGAAGGC-AGATCCCAGAAA--TCTTAGCCTGCTGTCCCTAGAAAGGCCT  93
      |  |||| |||| |||||||  ||||||| |||||||| |||||| ||  
seq2  G--AGGCAAGAT-CCAGAAAATTCTTAGCTTGCTGTCCTTAGAAAAGCTC  95

seq1  CCTCTGAGGCTCTGTAC-AGAAGTGACTTGGCCATA-TCTACATTGAAC-  140
      |||||||||||  |||| ||||||||  || ||||| |||||||  ||| 
seq2  CCTCTGAGGCTTCGTACAAGAAGTGAACTGACCATATTCTACATGAAACA  145

seq1  ATACGGACGCATTTTAGAGACAGACTCACGAGACATACATTTGTGATTAT  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGGACGCATTTTAGAGACAGACTCACGAGACATACATTTGTGATTAT  195

seq1  ATTTAGGTAGATATATGACAACTGTGCAGAG-AAAGCAGAAGACAACTAG  239
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTTAGGTAGATATATGACAACTGTGCAGAGAAAAGCAGAAGACAACTAG  245

seq1  GAGGAAAGTCAAGACCTCCCAGGCATCACCTCTCCATGGACACTGACACA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGTCAAGACCTCCCAGGCATCACCTCTCCATGGACACTGACACA  295

seq1  AATACAGTTACAGCCCCGGGATCAAACATTCACCTGTGTGTGTCCAATTA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTTACAGCCCCGGGATCAAACATTCACCTGTGTGTGTCCAATTA  345

seq1  ATAAAAACACGCTTTCAGAGTAAAGCAAACACTGTGTTTCTCTTAAAACC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACACGCTTTCAGAGTAAAGCAAACACTGTGTTTCTCTTAAAACC  395

seq1  ATTATTTAGAAAGTAAGATAGGAAGTGTGAATGGTGGCGTAAGTATTCTG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAGAAAGTAAGATAGGAAGTGTGAATGGTGGCGTAAGTATTCTG  445

seq1  TTTTACACAGACTACCATAAAACAAACGATGTAGTTCAGACTGGCTTCGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACAGACTACCATAAAACAAACGATGTAGTTCAGACTGGCTTCGA  495

seq1  ACTCATGGTAATCCCCCTGCATCTGCCTCCCAAGTGCTGCGAAATGGGTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGGTAATCCCCCTGCATCTGCCTCCCAAGTGCTGCGAAATGGGTG  545

seq1  TGAGCTCTTAGCATTTTCTCTTAAATCCCCGGTTCTGACCCTGAGGTTGC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTTAGCATTTTCTCTTAAATCCCCGGTTCTGACCCTGAGGTTGC  595

seq1  CAGATGCAGACAATTAGGGATTGGAGTATGTTTTTGTGAAGATTCAGGGA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCAGACAATTAGGGATTGGAGTATGTTTTTGTGAAGATTCAGGGA  645

seq1  TGCTGTTCAGATTCATTCATTTCTGCTGCTGTTGGTCATGTGGTCACTGC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCAGATTCATTCATTTCTGCTGCTGTTGGTCATGTGGTCACTGC  695

seq1  TGCGCTGTGATTCCTACTTCGTAAGTGATGGTGACAGTGTTCTTCTGCTG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTGTGATTCCTACTTCGTAAGTGATGGTGACAGTGTTCTTCTGCTG  745

seq1  GGCCACAGAGCAGGGTACAGTAGGAGGCAGCCCCTGCGGCGCCTGACTAG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGAGCAGGGTACAGTAGGAGGCAGCCCCTGCGGCGCCTGACTAG  795

seq1  GTGGGCTTGGGAAAGAACACTGAAGAGGCAGAAGTAGACCAATCCTGGCC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTTGGGAAAGAACACTGAAGAGGCAGAAGTAGACCAATCCTGGCC  845

seq1  CAGATAGGCACTCCTGATGTGAGGTGTCTAGCTTGGAAGAAAAGGTATTA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGGCACTCCTGATGTGAGGTGTCTAGCTTGGAAGAAAAGGTATTA  895

seq1  CAGAGATTTCTTCAGAGAGGCTACATCTTGTGAGAAAAACATACCTGGAC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTTCTTCAGAGAGGCTACATCTTGTGAGAAAAACATACCTGGAC  945

seq1  ACAATGAAATGCATTTCTTTCTTTAAAAATCAAACAACATCATCAATCAC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAATGCATTTCTTTCTTTAAAAATCAAACAACATCATCAATCAC  995

seq1  CAGGGCGCTGGTCTCTTCCACTCACAGCTCAGGATGGGGCTGCTCTCGCT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCGCTGGTCTCTTCCACTCACAGCTCAGGATGGGGCTGCTCTCGCT  1045

seq1  TTACCTGGGTCCGAAGGCTCTGGGACTCCACACAAATCAAGACAAGCTTT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGGGTCCGAAGGCTCTGGGACTCCACACAAATCAAGACAAGCTTT  1095

seq1  ATTGAATTTAAATTCTGCCACCTACCAAAAAAGCTTTGGGGACATTCAGT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTTAAATTCTGCCACCTACCAAAAAAGCTTTGGGGACATTCAGT  1145

seq1  GGTTGAAGGGCACACAGGTCTTGCCAGGGGCTGACAGTTTGTGAATTATG  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAGGGCACACAGGTCTTGCCAGGGGCTGACAGTTTGTGAATTATG  1195

seq1  AATTC  1194
      |||||
seq2  AATTC  1200

seq1: chr2_119807401_119808406
seq2: B6Ng01-228B03.g_64_1076

seq1  GAATTCCTCCATGGCCAGCTTTAGACCCATGTCTAGCAACCTCTGCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCATGGCCAGCTTTAGACCCATGTCTAGCAACCTCTGCCTGT  50

seq1  CTGTAGTCTTGCTTTTCCTCTCCCCCTGGTGCTTTCCTGACTCCCTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTCTTGCTTTTCCTCTCCCCCTGGTGCTTTCCTGACTCCCTCCCC  100

seq1  ACAGCTTGCCATGGGATATGTTAGGAAGCATTTAACTTGTGGGTCTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTGCCATGGGATATGTTAGGAAGCATTTAACTTGTGGGTCTGTGG  150

seq1  GTAATTGAAGGTCAAGTTGTTGCAGCTGTGTGGTTCCAGATGCCCATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGAAGGTCAAGTTGTTGCAGCTGTGTGGTTCCAGATGCCCATGAG  200

seq1  CCAGAGCAATTGATGCCGCTTTTAGAATTAGTGGGAAGCAGAAACTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCAATTGATGCCGCTTTTAGAATTAGTGGGAAGCAGAAACTGCCA  250

seq1  GATGCCTTGGTCATCTCTAGGCATCAGGGATGGCTGCGTTTTCATCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTTGGTCATCTCTAGGCATCAGGGATGGCTGCGTTTTCATCTGAG  300

seq1  GTATTGTTGGGCAAGCTGATTGAGTCTCTTCTGTTCTTGAGGAGGGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTTGGGCAAGCTGATTGAGTCTCTTCTGTTCTTGAGGAGGGCCTA  350

seq1  GTGTAATGCTAGATCTTTCCCTCCAGCTGGGCCTATTTGTTGCTTTAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATGCTAGATCTTTCCCTCCAGCTGGGCCTATTTGTTGCTTTAGCC  400

seq1  TGTAACCAACCTTGTTTTTTAAATCATGGAGAATGCTGAGTGAAATCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCAACCTTGTTTTTTAAATCATGGAGAATGCTGAGTGAAATCTTT  450

seq1  ATTTTTGTAAAACAAAGCAGAGCTACCCCACATGCACCATGCCTGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTAAAACAAAGCAGAGCTACCCCACATGCACCATGCCTGAGAGA  500

seq1  TGACAGGACTCCATGAACTTGAACGACAGAAATGAGGTCAGCTGTTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGACTCCATGAACTTGAACGACAGAAATGAGGTCAGCTGTTCACC  550

seq1  TGACTCCCTTTATCTGTGTAGCTCCAGGGTTATAAGTTTCCTCTAGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCTTTATCTGTGTAGCTCCAGGGTTATAAGTTTCCTCTAGCAGA  600

seq1  TGTCTGCCCTTACCTGACCTCAGGTCTGTATGGTTTTGATTTCTTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCCTTACCTGACCTCAGGTCTGTATGGTTTTGATTTCTTCTCTC  650

seq1  AAGTAGGAAAGTGTGACCTGTAAGTACAAAAACATGGGTCTCAAGGCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGAAAGTGTGACCTGTAAGTACAAAAACATGGGTCTCAAGGCATG  700

seq1  CTCCCCTGAATTGCTTACACCCAGGACCCGCTTCCTTGGGCCACACTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTGAATTGCTTACACCCAGGACCCGCTTCCTTGGGCCACACTTTG  750

seq1  AGTTAGTAGGCTGCTGGGGCAGTGAGTGGGTAGGGAGAGGGAAATCACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTAGGCTGCTGGGGCAGTGAGTGGGTAGGGAGAGGGAAATCACAC  800

seq1  ACACACACACACACAACACC-TTCCTCACTTCAGAGGG-AACTGGCTAGT  848
      |||||||||||||||||||| || |||||||||||||| |||||||||||
seq2  ACACACACACACACAACACCTTTTCTCACTTCAGAGGGAAACTGGCTAGT  850

seq1  GTCTTATTTGTAAAATT-GGATCCTGGT-GCATTCCAGAGC-TGTGGTGA  895
      ||||||||||||||||| |||||||||| |||||| ||||| ||||||||
seq2  GTCTTATTTGTAAAATTGGGATCCTGGTGGCATTCAAGAGCTTGTGGTGA  900

seq1  GGCTTAAATGAGATTTAGTGACCAT-GAAAGAGTGGTGTAAGGCCCAAAC  944
      ||||| ||||||||||||||||||| ||||||||||||||||||||| ||
seq2  GGCTT-AATGAGATTTAGTGACCATGGAAAGAGTGGTGTAAGGCCCATAC  949

seq1  AGCTTCA-CGGTTGTAAGGGATGGCTAATGTTAACAGAGCACAAGGATTT  993
      ||||||| |||||||||||||||||||||||||||||| |||||||| ||
seq2  AGCTTCACCGGTTGTAAGGGATGGCTAATGTTAACAGAACACAAGGAATT  999

seq1  GTGTAGT-ATCAAG  1006
      ||||| | ||||||
seq2  GTGTAATAATCAAG  1013