BAC Information

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BAC

Clone NameB6Ng01-228M06
Chromosome2 (Build37)
Map Location 84,689,952 - 84,844,492
singlet/doubletdoublet
Overlap geneSlc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3
Upstream geneD430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10
Downstream geneSsrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228M06.bB6Ng01-228M06.g
ACCGA042100GA042101
length5911,166
definitionB6Ng01-228M06.b B6Ng01-228M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,689,952 - 84,690,548)(84,843,335 - 84,844,492)
sequence
tcatggaccgctttgggcccaggcctcttcgactggtgggcaggtgaggt
ggctgggttgtgcggagatgcagggccaggaaggtgatgcagaggaaggg
aggcaaaaaaaaaaaaaaaaaatcatgccccatgtttctgtgtccttaca
gtgcctgctttgccgcatcctgcactctaatggccttggcctccagggac
actgaaggtaagccacctgccttcgtgtgccttctctagaatgggtgaga
tgaaggtgggccttgactctcacggccccacaaatgccctcatctaccct
tctttctcttcccagttttgtctccattgatattcctggcactgtccttg
aatggatttgctggcatctgcttaacgtttacctcactcacggtgagtat
tactgatttgccctggctgccatccagacacctaggagtgggtggggtta
gaaatgagtgagagggggctgaagagatggctcagcatttcagaacgtta
tgctgttcttctagaggaccagattgggttgtcagcaccccttggcctct
agctcacaactgcctataactcaagcaccagagaaactaac
gaattctcccattgtatgagaacatagaatttagaaggattctgagatct
tgtaccaggatgcctgtacccttaacagctagctaaagacagatggttca
gagattccaagtttgggctgtggagtcatagaatcagaagtcatcagact
caagcaagtcacctgctcttctctctccaaacctataaaatgggtcaata
atagtgcattattcatgaggttaactgaggtaatctgcatatatttgtgg
gtctctatatttagtgggtactgagatggtcatgacctgttcagaccctc
aagctagcctgagagccacaggtttctaaaatcttctacccatctcaaat
acttcttttcctaacttcttcaagatctccctggaggtctccttggaatc
ccgggttcttgtgtctcatcacggacataaaaacagtccccttccttttg
tccatttcatcatcctcctgctgctttggagtggaattcattctgctttg
ccttgacctgtgaagcacgctcccaccattacccagtgggagacataaca
tgccagagttgcccagacataacttaccaaagttaaagatggccttgttc
ctcacaccctttccctgacctccaggccctccttccagctcagtggctct
gcttcattcagcatcccctagggggtcactttcattgtcccctgggcctc
actctctggagaagagactcctgccttccctcactctgcccacagggatc
acctttgagtcagtaccccctgagagtatttccactgaaatggttctcag
tcttcctcagcaggttcagcactcaggccttgcccaggcacagggcaggg
gccagaaatctgtctgctacctgaactttcctgtactgctgcttgatcat
gacagaggcgtctgggccttgagctttcctcttctgtaaatgggagcacc
taggatagggatccaaaggggacatagactgccttaaaagatgcatttac
gtgaaaccactgcacaagggtacacatggaacaagaggagttctacatag
ggaagacccaaggttgccagcctgtggaagctgtttatgctgggctggca
tgggccaagcaagggagaaagcccagaatgtgatatgaggcctgaaactg
gttctgtaagcaattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84689952_84690548
seq2: B6Ng01-228M06.b_46_642

seq1  GAATTCTCATGGACCGCTTTGGGCCCAGGCCTCTTCGACTGGTGGGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGGACCGCTTTGGGCCCAGGCCTCTTCGACTGGTGGGCAGG  50

seq1  TGAGGTGGCTGGGTTGTGCGGAGATGCAGGGCCAGGAAGGTGATGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGGCTGGGTTGTGCGGAGATGCAGGGCCAGGAAGGTGATGCAGAG  100

seq1  GAAGGGAGGCAAAAAAAAAAAAAAAAAATCATGCCCCATGTTTCTGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAGGCAAAAAAAAAAAAAAAAAATCATGCCCCATGTTTCTGTGTC  150

seq1  CTTACAGTGCCTGCTTTGCCGCATCCTGCACTCTAATGGCCTTGGCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTGCCTGCTTTGCCGCATCCTGCACTCTAATGGCCTTGGCCTCC  200

seq1  AGGGACACTGAAGGTAAGCCACCTGCCTTCGTGTGCCTTCTCTAGAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACACTGAAGGTAAGCCACCTGCCTTCGTGTGCCTTCTCTAGAATGG  250

seq1  GTGAGATGAAGGTGGGCCTTGACTCTCACGGCCCCACAAATGCCCTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGAAGGTGGGCCTTGACTCTCACGGCCCCACAAATGCCCTCATC  300

seq1  TACCCTTCTTTCTCTTCCCAGTTTTGTCTCCATTGATATTCCTGGCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTCTTTCTCTTCCCAGTTTTGTCTCCATTGATATTCCTGGCACTG  350

seq1  TCCTTGAATGGATTTGCTGGCATCTGCTTAACGTTTACCTCACTCACGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAATGGATTTGCTGGCATCTGCTTAACGTTTACCTCACTCACGGT  400

seq1  GAGTATTACTGATTTGCCCTGGCTGCCATCCAGACACCTAGGAGTGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTACTGATTTGCCCTGGCTGCCATCCAGACACCTAGGAGTGGGTG  450

seq1  GGGTTAGAAATGAGTGAGAGGGGGCTGAAGAGATGGCTCAGCAGTTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGTTAGAAATGAGTGAGAGGGGGCTGAAGAGATGGCTCAGCATTTCAGA  500

seq1  ACGTTATGCTGTTCTTCTAGAGGACCAGATTGGGTTGTCAGCACCCCTAG  550
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACGTTATGCTGTTCTTCTAGAGGACCAGATTGGGTTGTCAGCACCCCTTG  550

seq1  GCCTCTAGCTCACAACTGCCTATAACTCAAGCACCAGAGAAACTAAC  597
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAGCTCACAACTGCCTATAACTCAAGCACCAGAGAAACTAAC  597

seq1: chr2_84843335_84844492
seq2: B6Ng01-228M06.g_68_1233 (reverse)

seq1  CAATGGCTTACAGAA-CAGTTTCA-GCCTCATCT-ACATTCTGGGCTTTT  47
      |||| |||||||||| |||||||| ||||||| | ||||||||||| |||
seq2  CAATTGCTTACAGAACCAGTTTCAGGCCTCATATCACATTCTGGGC-TTT  49

seq1  CTCCCTTTGCTT-GCCCATGCCAGCCCCAGCAT-AACAGCTTCCACAGGC  95
      ||||| |||||| ||||||||||| |||||||| ||||||||||||||||
seq2  CTCCC-TTGCTTGGCCCATGCCAG-CCCAGCATAAACAGCTTCCACAGGC  97

seq1  TGCCAACCTTGGGGTCCTTCCCTATGTAG-ACTCCTCTTGTTCCATGTGT  144
      || ||||||||||   ||||||||||||| ||||||||||||||||||||
seq2  TGGCAACCTTGGG--TCTTCCCTATGTAGAACTCCTCTTGTTCCATGTGT  145

seq1  ACCCTTGTGCAGT-GTTTCACGTAATTGCATCTTTTAAGGCAGTCTATGT  193
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  ACCCTTGTGCAGTGGTTTCACGTAAATGCATCTTTTAAGGCAGTCTATGT  195

seq1  CCCCTT--GGTTCCTATCCTAGGTGCTCCCATTTTACAGAAGAGG-AAGC  240
      ||||||  | | ||||||||||||||||||| ||||||||||||| ||||
seq2  CCCCTTTGGATCCCTATCCTAGGTGCTCCCA-TTTACAGAAGAGGAAAGC  244

seq1  TC-AGGCCCAGACGCCTCTGTCATGATCAAGCAGCAGTACAGGAAAGTTC  289
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCCAGACGCCTCTGTCATGATCAAGCAGCAGTACAGGAAAGTTC  294

seq1  AGGTAGCAGACAGATTTCTGG-CCCTG-CCTGTGCCTGGGCAAGGCCTGA  337
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  AGGTAGCAGACAGATTTCTGGCCCCTGCCCTGTGCCTGGGCAAGGCCTGA  344

seq1  GTGCTGAACCTGCTGAGGAAGACTGAGAACCA-TTCAGTGGAAATACTCT  386
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGCTGAACCTGCTGAGGAAGACTGAGAACCATTTCAGTGGAAATACTCT  394

seq1  CAGGGGGTACTGACTCAAAGGTGATCCCTGTGGGCAGAGTGAGGGAAGGC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGTACTGACTCAAAGGTGATCCCTGTGGGCAGAGTGAGGGAAGGC  444

seq1  AGGAGTCTCTTCTCCAGAGAGTGAGGCCCAGGGGACAATGAAAGTGACCC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCTCTTCTCCAGAGAGTGAGGCCCAGGGGACAATGAAAGTGACCC  494

seq1  CCTAGGGGATGCTGAATGAAGCAGAGCCACTGAGCTGGAAGGAGGGCCTG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGGATGCTGAATGAAGCAGAGCCACTGAGCTGGAAGGAGGGCCTG  544

seq1  GAGGTCAGGGAAAGGGTGTGAGGAACAAGGCCATCTTTAACTTTGGTAAG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGGGAAAGGGTGTGAGGAACAAGGCCATCTTTAACTTTGGTAAG  594

seq1  TTATGTCTGGGCAACTCTGGCATGTTATGTCTCCCACTGGGTAATGGTGG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCTGGGCAACTCTGGCATGTTATGTCTCCCACTGGGTAATGGTGG  644

seq1  GAGCGTGCTTCACAGGTCAAGGCAAAGCAGAATGAATTCCACTCCAAAGC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTGCTTCACAGGTCAAGGCAAAGCAGAATGAATTCCACTCCAAAGC  694

seq1  AGCAGGAGGATGATGAAATGGACAAAAGGAAGGGGACTGTTTTTATGTCC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGGATGATGAAATGGACAAAAGGAAGGGGACTGTTTTTATGTCC  744

seq1  GTGATGAGACACAAGAACCCGGGATTCCAAGGAGACCTCCAGGGAGATCT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGACACAAGAACCCGGGATTCCAAGGAGACCTCCAGGGAGATCT  794

seq1  TGAAGAAGTTAGGAAAAGAAGTATTTGAGATGGGTAGAAGATTTTAGAAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGTTAGGAAAAGAAGTATTTGAGATGGGTAGAAGATTTTAGAAA  844

seq1  CCTGTGGCTCTCAGGCTAGCTTGAGGGTCTGAACAGGTCATGACCATCTC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGCTCTCAGGCTAGCTTGAGGGTCTGAACAGGTCATGACCATCTC  894

seq1  AGTACCCACTAAATATAGAGACCCACAAATATATGCAGATTACCTCAGTT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCACTAAATATAGAGACCCACAAATATATGCAGATTACCTCAGTT  944

seq1  AACCTCATGAATAATGCACTATTATTGACCCATTTTATAGGTTTGGAGAG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCATGAATAATGCACTATTATTGACCCATTTTATAGGTTTGGAGAG  994

seq1  AGAAGAGCAGGTGACTTGCTTGAGTCTGATGACTTCTGATTCTATGACTC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCAGGTGACTTGCTTGAGTCTGATGACTTCTGATTCTATGACTC  1044

seq1  CACAGCCCAAACTTGGAATCTCTGAACCATCTGTCTTTAGCTAGCTGTTA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCAAACTTGGAATCTCTGAACCATCTGTCTTTAGCTAGCTGTTA  1094

seq1  AGGGTACAGGCATCCTGGTACAAGATCTCAGAATCCTTCTAAATTCTATG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACAGGCATCCTGGTACAAGATCTCAGAATCCTTCTAAATTCTATG  1144

seq1  TTCTCATACAATGGGAGAATTC  1158
      ||||||||||||||||||||||
seq2  TTCTCATACAATGGGAGAATTC  1166