BAC Information

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BAC

Clone NameB6Ng01-229D23
Chromosome2 (Build37)
Map Location 159,682,431 - 159,861,142
singlet/doubletdoublet
Overlap genenone
Upstream geneDhx35, LOC100043891, LOC100043689
Downstream geneGm826, Mafb, LOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229D23.bB6Ng01-229D23.g
ACCGA042449GA042450
length1,1381,144
definitionB6Ng01-229D23.b B6Ng01-229D23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,682,431 - 159,683,563)(159,859,991 - 159,861,142)
sequence
gaattccaacaagatttcaatggagctttccaaaatctttcattctgccc
agactttgtatgaggtcccaggacaatatgtcccacagcaaagaatgacc
aggctttaaggaaagttagagagggagtcagggtggatgagcttgctgat
gaatctataaaatcagtgccccagaggagcggaagttgaaatcatttatt
tataattagagattcaatggactgtgtgacttggaaatttcacgattcag
tgttctcagtgaaaatgctcaataataattaagaaaacaaccaaaagctt
gagaaagaaatatttgaataaatgacaaataccttcttcttctttagaaa
aagcaatggtactctactcatagacaggctttcagaactgaagctaaatt
tagcttttccaaatgttcctccagagattccaccagcagaagagtgaaga
tcatgtagtacatggggcttgtgagctaaaatcagggatggtgatgcttc
tggggaccttctcttcaagttgagattgacggaatgcacacctcaaggga
attctagagtctgaaacttaagcccctttttccacaagaaggattagaaa
ctcacaaagagtttgccgtgagaaaacactctcacactactgctctgaat
gttttgttgtatgtgagaaattatgctttcactatgatgataaataaagg
gaaaatcagaagtagacttcacaattttgaaaatagattcaacatatagg
aaaattctggatggatttcaccaaaaccaaagctatttattcaagtccaa
gaaattactaagaaacagtttatctcccaatcaactctattgttgctgtt
tcattggttgtatacatatatgtgaatcttaataatcaccaaatgtcctg
aaattgatttatcatcagtagatttggttggacagacttggggtgggatc
tgtctgatcatttctcatagcaaaaatgaatagtgtgtttagagatagca
gatgtacaagcagttaccatggtgctgagggttagtgggccatcctccgt
tccctttccactgtgagttaccaatgtccttatccctgtagatctcagct
cggtcactatttctgccttaataactcctcctattttc
gaattccttttcctttcacaaaccgaactgaacagaaccaaacctaaaag
gagtctatttgcttccttgcttctgtcaaaacaaacaggaaacccagaaa
cgtgtgaataacatttcctgatttataaatgatatacttaatttgtttcc
tttgagaagattagaaaagttcaactatgggtgcagcctgggtgtggtga
accagcttagagcttatggttttatttgatctcttattggccaatttctg
ctgccttctttttccttttgcccaagactactttggggtttctttttctt
cccctcttccatttccctgtgacattgacagtatcttttttttttttttt
ttttttttttaatttccttaatggaaagccagactccctgcctgaggcac
attttcacagaccatacagttttccccccgcttcagcctcacacagagcc
tcacctctttttcacttccaacaatacaggaatggcaccccggtccacgg
aatataggatgattcaccctagactgcattcttaggagaaatcagaataa
atctttctatttgtacctaaaaaagaagcctaaaacaaaaacaatcctaa
gtggctgtggataccatcattaggaatgcaaacttgccagcaacttgggg
ctgcctctgtagatgggtttgccagtcgtaggccccataattgaagctac
tgctgatcttggtaagacactgtcattaaaggagacatgacaagagtgct
tccattgcctttccggagaaatatgccgaagaaacctcaaccactgaaga
tttaataattatactggaaaggcatgtccttgtgcaaaatgcctgggagt
cttcctagttgcaatgatcgaccgtcttttaataaaaaaatattttattt
ttatatgtgtatatatgtggatgctctgtgtggatgcacaacacacgcaa
ctcacacacacatacacacacctactcactcactcacacccagagaggag
agacgctcacaaagctagagcatgatctggatgtgctgagcctatagttg
tagtgagccaccctgacattggtggacgagatacgagtggaccttgtgca
gaaatatataccacttggccattcctcagcccatgttctaattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_159682431_159683563
seq2: B6Ng01-229D23.b_46_1183

seq1  GAATTCCAACAAGATTTCAATGGAGCTTTCCAAAATCTTTCATTCTGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAAGATTTCAATGGAGCTTTCCAAAATCTTTCATTCTGCCC  50

seq1  AGACTTTGTATGAGGTCCCAGGACAATATGTCCCACAGCAAAGAATGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTGTATGAGGTCCCAGGACAATATGTCCCACAGCAAAGAATGACC  100

seq1  AGGCTTTAAGGAAAGTTAGAGAGGGAGTCAGGGTGGATGAGCTTGCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTAAGGAAAGTTAGAGAGGGAGTCAGGGTGGATGAGCTTGCTGAT  150

seq1  GAATCTATAAAATCAGTGCCCCAGAGGAGCGGAAGTTGAAATCATTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTATAAAATCAGTGCCCCAGAGGAGCGGAAGTTGAAATCATTTATT  200

seq1  TATAATTAGAGATTCAATGGACTGTGTGACTTGGAAATTTCACGATTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTAGAGATTCAATGGACTGTGTGACTTGGAAATTTCACGATTCAG  250

seq1  TGTTCTCAGTGAAAATGCTCAATAATAATTAAGAAAACAACCAAAAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCAGTGAAAATGCTCAATAATAATTAAGAAAACAACCAAAAGCTT  300

seq1  GAGAAAGAAATATTTGAATAAATGACAAATACCTTCTTCTTCTTTAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAAATATTTGAATAAATGACAAATACCTTCTTCTTCTTTAGAAA  350

seq1  AAGCAATGGTACTCTACTCATAGACAGGCTTTCAGAACTGAAGCTAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGGTACTCTACTCATAGACAGGCTTTCAGAACTGAAGCTAAATT  400

seq1  TAGCTTTTCCAAATGTTCCTCCAGAGATTCCACCAGCAGAAGAGTGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTCCAAATGTTCCTCCAGAGATTCCACCAGCAGAAGAGTGAAGA  450

seq1  TCATGTAGTACATGGGGCTTGTGAGCTAAAATCAGGGATGGTGATGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAGTACATGGGGCTTGTGAGCTAAAATCAGGGATGGTGATGCTTC  500

seq1  TGGGGACCTTCTCTTCAAGTTGAGATTGACGGAATGCACACCTCAAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCTTCTCTTCAAGTTGAGATTGACGGAATGCACACCTCAAGGGA  550

seq1  ATTCTAGAGTCTGAAACTTAAGCCCCTTTTTCCACAAGAAGGATTAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGAGTCTGAAACTTAAGCCCCTTTTTCCACAAGAAGGATTAGAAA  600

seq1  CTCACAAAGAGTTTGCCGTGAGAAAACACTCTCACACTACTGCTCTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAAGAGTTTGCCGTGAGAAAACACTCTCACACTACTGCTCTGAAT  650

seq1  GTTTTGTTGTATGTGAGAAATTATGCTTTCACTATGATGATAAATAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTGTATGTGAGAAATTATGCTTTCACTATGATGATAAATAAAGG  700

seq1  GAAAATCAGAAGTAGACTTCACAATTTTGAAAATAGATTCAACATATAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCAGAAGTAGACTTCACAATTTTGAAAATAGATTCAACATATAGG  750

seq1  AAAATTCTGGATGGATTTCACCAAAACCAAAGCTATTTATTCAAGTCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTGGATGGATTTCACCAAAACCAAAGCTATTTATTCAAGTCCAA  800

seq1  GAAATTACTAAGAAACAGTTTATCTCCCAATCAACTCTATTGTTGCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTACTAAGAAACAGTTTATCTCCCAATCAACTCTATTGTTGCTGTT  850

seq1  TCATTGGTTGTATACATATATGTGAATCTTAATAATCACCAAATGTCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGTTGTATACATATATGTGAATCTTAATAATCACCAAATGTCCTG  900

seq1  -AATTGATTTATCATCAGTAGATTTGGTTGGACAGACTT-GGGTGGGATC  948
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAATTGATTTATCATCAGTAGATTTGGTTGGACAGACTTGGGGTGGGATC  950

seq1  TGTCTGATCATTTCTCATAGCAAAAATGAAATAGTGTGTTTAGAGATAGC  998
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTCTGATCATTTCTCATAGCAAAAATG-AATAGTGTGTTTAGAGATAGC  999

seq1  AGATGTAC-AGCAGTTACCATGGTGCTGAGGGTTAGTGGGCCATC--TCG  1045
      |||||||| ||||||||||||||||||||||||||||||||||||   ||
seq2  AGATGTACAAGCAGTTACCATGGTGCTGAGGGTTAGTGGGCCATCCTCCG  1049

seq1  TTTCCTTTCCACTGTGAG-TACCAAAATGTCCTTAT-CCTGTAGATCTCA  1093
      || ||||||||||||||| ||||  ||||||||||| |||||||||||||
seq2  TTCCCTTTCCACTGTGAGTTACC--AATGTCCTTATCCCTGTAGATCTCA  1097

seq1  GCTCCGTCAACTA-TTCTGCCTTAATTACTTCT-CTATTTTC  1133
      |||| ||| |||| |||||||||||| ||| || ||||||||
seq2  GCTCGGTC-ACTATTTCTGCCTTAATAACTCCTCCTATTTTC  1138

seq1: chr2_159859991_159861142
seq2: B6Ng01-229D23.g_65_1208 (reverse)

seq1  CAATAAGAACATGGGCTGAAGGAATGGCTCAGTGGTA-ATATTCTTGCAC  49
      |||| ||||||||||||| |||||||||  ||||||| |||||  |||||
seq2  CAATTAGAACATGGGCTG-AGGAATGGCCAAGTGGTATATATTTCTGCAC  49

seq1  AAGGTCCAACTTCGTTACTCGT-CACC-ATGTCA-GGTGGCTCACTACCA  96
      ||||||||   ||||  ||||| |||| |||||| |||||||||||| ||
seq2  AAGGTCCA--CTCGTATCTCGTCCACCAATGTCAGGGTGGCTCACTA-CA  96

seq1  CCTATAGCTCCAGCCACAT-CAGATCATTGCTTCTAGCCTTTGTGAGCGT  145
       ||||||   ||| ||||| ||||||| ||| ||||| ||||||||||||
seq2  ACTATAGGCTCAG-CACATCCAGATCA-TGC-TCTAG-CTTTGTGAGCGT  142

seq1  CTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  195
      ||||| |||| || ||||| ||| ||| ||  |||||||| |||||||||
seq2  CTCTC-CTCTCTGGGTGTGAGTGAGTGAGTAGGTGTGTGTATGTGTGTGT  191

seq1  GTGTGTGCGTGTGTGTGTGCATCCACACAGAGCATCCACATATATACACA  245
      | || ||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAGT-TGCGTGTGT-TGTGCATCCACACAGAGCATCCACATATATACACA  239

seq1  TAATTAAAAATAAAATA-TTTTTTATTAAAAGACGGTCGATCATTGCAAC  294
      ||  ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TA--TAAAAATAAAATATTTTTTTATTAAAAGACGGTCGATCATTGCAAC  287

seq1  TAGGAAGACTCCCAGGCATTTTGCACAAGGACATGCCTTTTCCAGTATAA  344
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAGGAAGACTCCCAGGCATTTTGCACAAGGACATGCC-TTTCCAGTATAA  336

seq1  TTATTAAATCTTCAGTGGTTGAGGTTTCTTCGGCATATTTCTCCGGAAAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAATCTTCAGTGGTTGAGGTTTCTTCGGCATATTTCTCCGGAAAG  386

seq1  GCAATGGAAGCACTCTTGTCATGTCTCCTTTAATGACAGTGTCTTACCAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGAAGCACTCTTGTCATGTCTCCTTTAATGACAGTGTCTTACCAA  436

seq1  GATCAGCAGTAGCTTCAATTATGGGGCCTACGACTGGCAAACCCATCTAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCAGTAGCTTCAATTATGGGGCCTACGACTGGCAAACCCATCTAC  486

seq1  AGAGGCAGCCCCAAGTTGCTGGCAAGTTTGCATTCCTAATGATGGTATCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGCCCCAAGTTGCTGGCAAGTTTGCATTCCTAATGATGGTATCC  536

seq1  ACAGCCACTTAGGATTGTTTTTGTTTTAGGCTTCTTTTTTAGGTACAAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACTTAGGATTGTTTTTGTTTTAGGCTTCTTTTTTAGGTACAAAT  586

seq1  AGAAAGATTTATTCTGATTTCTCCTAAGAATGCAGTCTAGGGTGAATCAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATTTATTCTGATTTCTCCTAAGAATGCAGTCTAGGGTGAATCAT  636

seq1  CCTATATTCCGTGGACCGGGGTGCCATTCCTGTATTGTTGGAAGTGAAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATTCCGTGGACCGGGGTGCCATTCCTGTATTGTTGGAAGTGAAAA  686

seq1  AGAGGTGAGGCTCTGTGTGAGGCTGAAGCGGGGGGAAAACTGTATGGTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGAGGCTCTGTGTGAGGCTGAAGCGGGGGGAAAACTGTATGGTCT  736

seq1  GTGAAAATGTGCCTCAGGCAGGGAGTCTGGCTTTCCATTAAGGAAATTAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATGTGCCTCAGGCAGGGAGTCTGGCTTTCCATTAAGGAAATTAA  786

seq1  AAAAAAAAAAAAAAAAAAAAAAAGATACTGTCAATGTCACAGGGAAATGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAGATACTGTCAATGTCACAGGGAAATGG  836

seq1  AAGAGGGGAAGAAAAAGAAACCCCAAAGTAGTCTTGGGCAAAAGGAAAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGGAAGAAAAAGAAACCCCAAAGTAGTCTTGGGCAAAAGGAAAAA  886

seq1  GAAGGCAGCAGAAATTGGCCAATAAGAGATCAAATAAAACCATAAGCTCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGCAGAAATTGGCCAATAAGAGATCAAATAAAACCATAAGCTCT  936

seq1  AAGCTGGTTCACCACACCCAGGCTGCACCCATAGTTGAACTTTTCTAATC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGTTCACCACACCCAGGCTGCACCCATAGTTGAACTTTTCTAATC  986

seq1  TTCTCAAAGGAAACAAATTAAGTATATCATTTATAAATCAGGAAATGTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAGGAAACAAATTAAGTATATCATTTATAAATCAGGAAATGTTA  1036

seq1  TTCACACGTTTCTGGGTTTCCTGTTTGTTTTGACAGAAGCAAGGAAGCAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACGTTTCTGGGTTTCCTGTTTGTTTTGACAGAAGCAAGGAAGCAA  1086

seq1  ATAGACTCCTTTTAGGTTTGGTTCTGTTCAGTTCGGTTTGTGAAAGGAAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTCCTTTTAGGTTTGGTTCTGTTCAGTTCGGTTTGTGAAAGGAAA  1136

seq1  AGGAATTC  1152
      ||||||||
seq2  AGGAATTC  1144