BAC Information

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BAC

Clone NameB6Ng01-230B04
Chromosome2 (Build37)
Map Location 49,616,693 - 49,749,161
singlet/doubletdoublet
Overlap geneKif5c, 2310010M24Rik
Upstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2
Downstream geneLypd6, 2010311D03Rik, LOC666781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230B04.bB6Ng01-230B04.g
ACCGA043036GA043037
length734617
definitionB6Ng01-230B04.b B6Ng01-230B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,616,693 - 49,617,426)(49,748,548 - 49,749,161)
sequence
gaattcagtaaaactctgccaaacctacacaagtccgggttgacctggga
cttgctatgtagcccagacttaccttgaactcacaacaggctgcctgcct
gagcctcctgagtgttggagtcacaggtgtgagctaccacagtagattta
aaactcgacattttgtgtaaggttgatcatttgtcactggtatgacctct
tatactggagactgaaaagtcacaacttctctgacccagaacttcagagg
gggtgacctagatgtctatctaatgccaagcattaagtaagctcccatat
cacagcaacagtatgttgtccttaagagctccaccagaggttttgagttt
ctgtactgtgccatcatttacgaaaggaagtttccctctatgaccaactt
ctgagagcaacagtgatccactggcacagatatttagaaggcagcttgac
agccacatcacatatctttaataaaaccatgatagctgttttccactgtg
gcctgtgaacatccccagcctcaaatttttgttgtctcttacagtaccag
aagcaaattctcccctgtagagtggtttaagtctagttggaaagcagttg
gtcgtaccccaatcatctgtgccgctgttgtacctgtagtcacatcttgc
ttggcactttgatagcatggcatgcagggtccagaaggactgttggtgac
aatttctcccccaacagcctgcacagcacctctg
gaattcaaaagatgacttttgcaatttaaaacaaaaataactgtattttc
taaatatggggggatgggtagaggttgagaaactatgaaaggtaagaaat
ataataataataattttaaatttttaaaaataaaaaaggaattaaggtcc
tgttgtactttggatctgaactttgaggcttggtccccaggcttggggct
aatgggaggtgctaggtaggaagttcagtcattggagatgccacgagagg
gaacttgggaacaaggttttcctgtttctttctctgtctcctgggggcca
tagggtgacttctctgacactgcttccccacactcccaaatgtaacagga
tcatgtgaccatggactgacaccgtgaactaaaataaaccatttcttctt
atctgttgattatttctgatcttgttgtcataatgatggtagccagctag
cacagctcttgaaggtatataaggtttgggatcaggaaaaaagagaaatg
ttctgttgaaaacctcagaccagtacacacatattcgtcccttaacttcc
cttgcccccctgaaatagctgattggctaatactgttaagtatttccttt
attatgacaaaagacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_49616693_49617426
seq2: B6Ng01-230B04.b_48_781

seq1  GAATTCAGTAAAACTCTGCCAAACCTACACAAGTCCGGGTTGACCTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAAACTCTGCCAAACCTACACAAGTCCGGGTTGACCTGGGA  50

seq1  CTTGCTATGTAGCCCAGACTTACCTTGAACTCACAACAGGCTGCCTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTATGTAGCCCAGACTTACCTTGAACTCACAACAGGCTGCCTGCCT  100

seq1  GAGCCTCCTGAGTGTTGGAGTCACAGGTGTGAGCTACCACAGTAGATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCCTGAGTGTTGGAGTCACAGGTGTGAGCTACCACAGTAGATTTA  150

seq1  AAACTCGACATTTTGTGTAAGGTTGATCATTTGTCACTGGTATGACCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCGACATTTTGTGTAAGGTTGATCATTTGTCACTGGTATGACCTCT  200

seq1  TATACTGGAGACTGAAAAGTCACAACTTCTCTGACCCAGAACTTCAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGGAGACTGAAAAGTCACAACTTCTCTGACCCAGAACTTCAGAGG  250

seq1  GGGTGACCTAGATGTCTATCTAATGCCAAGCATTAAGTAAGCTCCCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACCTAGATGTCTATCTAATGCCAAGCATTAAGTAAGCTCCCATAT  300

seq1  CACAGCAACAGTATGTTGTCCTTAAGAGCTCCACCAGAGGTTTTGAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAACAGTATGTTGTCCTTAAGAGCTCCACCAGAGGTTTTGAGTTT  350

seq1  CTGTACTGTGCCATCATTTACGAAAGGAAGTTTCCCTCTATGACCAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTGTGCCATCATTTACGAAAGGAAGTTTCCCTCTATGACCAACTT  400

seq1  CTGAGAGCAACAGTGATCCACTGGCACAGATATTTAGAAGGCAGCTTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCAACAGTGATCCACTGGCACAGATATTTAGAAGGCAGCTTGAC  450

seq1  AGCCACATCACATATCTTTAATAAAACCATGATAGCTGTTTTCCACTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACATCACATATCTTTAATAAAACCATGATAGCTGTTTTCCACTGTG  500

seq1  GCCTGTGAACATCCCCAGCCTCAAATTTTTGTTGTCTCTTACAGTACCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGAACATCCCCAGCCTCAAATTTTTGTTGTCTCTTACAGTACCAG  550

seq1  AAGCAAATTCTCCCCTGTAGAGTGGTTTAAGTCTAGTTGGAAAGCAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATTCTCCCCTGTAGAGTGGTTTAAGTCTAGTTGGAAAGCAGTTG  600

seq1  GTCGTACCCCAATCATCTGTGCCGCTGTTGTACCTGTAGTCACATCTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTACCCCAATCATCTGTGCCGCTGTTGTACCTGTAGTCACATCTTGC  650

seq1  TTGGCACTTTGATAGCATGGCATGCAGGGTCCAGAAGGACTGTTGGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACTTTGATAGCATGGCATGCAGGGTCCAGAAGGACTGTTGGTGAC  700

seq1  AATTTCTCCCCCAACAGCCTGCACAGCACCTCTG  734
      ||||||||||||||||||||||||||||||||||
seq2  AATTTCTCCCCCAACAGCCTGCACAGCACCTCTG  734

seq1: chr2_49748548_49749161
seq2: B6Ng01-230B04.g_69_685 (reverse)

seq1  TTGTC-TTTGTCATAATAAAGG-AATACTTAACAGTATTAGCCAATCAGC  48
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGTCTTTTGTCATAATAAAGGAAATACTTAACAGTATTAGCCAATCAGC  50

seq1  TATTTCAGGGGGGCAAGGGAAGTTAA-GGACGAATATGTGTGTACTGGTC  97
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATTTCAGGGGGGCAAGGGAAGTTAAGGGACGAATATGTGTGTACTGGTC  100

seq1  TGAGGTTTTCAACAGAACATTTCTCTTTTTTCCTGATCCCAAACCTTATA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTTTCAACAGAACATTTCTCTTTTTTCCTGATCCCAAACCTTATA  150

seq1  TACCTTCAAGAGCTGTGCTAGCTGGCTACCATCATTATGACAACAAGATC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCAAGAGCTGTGCTAGCTGGCTACCATCATTATGACAACAAGATC  200

seq1  AGAAATAATCAACAGATAAGAAGAAATGGTTTATTTTAGTTCACGGTGTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAATCAACAGATAAGAAGAAATGGTTTATTTTAGTTCACGGTGTC  250

seq1  AGTCCATGGTCACATGATCCTGTTACATTTGGGAGTGTGGGGAAGCAGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATGGTCACATGATCCTGTTACATTTGGGAGTGTGGGGAAGCAGTG  300

seq1  TCAGAGAAGTCACCCTATGGCCCCCAGGAGACAGAGAAAGAAACAGGAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAGTCACCCTATGGCCCCCAGGAGACAGAGAAAGAAACAGGAAA  350

seq1  ACCTTGTTCCCAAGTTCCCTCTCGTGGCATCTCCAATGACTGAACTTCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTTCCCAAGTTCCCTCTCGTGGCATCTCCAATGACTGAACTTCCT  400

seq1  ACCTAGCACCTCCCATTAGCCCCAAGCCTGGGGACCAAGCCTCAAAGTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCACCTCCCATTAGCCCCAAGCCTGGGGACCAAGCCTCAAAGTTC  450

seq1  AGATCCAAAGTACAACAGGACCTTAATTCCTTTTTTATTTTTAAAAATTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAAAGTACAACAGGACCTTAATTCCTTTTTTATTTTTAAAAATTT  500

seq1  AAAATTATTATTATTATATTTCTTACCTTTCATAGTTTCTCAACCTCTAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTATTATTATATTTCTTACCTTTCATAGTTTCTCAACCTCTAC  550

seq1  CCATCCCCCCATATTTAGAAAATACAGTTATTTTTGTTTTAAATTGCAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCCCCATATTTAGAAAATACAGTTATTTTTGTTTTAAATTGCAAA  600

seq1  AGTCATCTTTTGAATTC  614
      |||||||||||||||||
seq2  AGTCATCTTTTGAATTC  617