BAC Information

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BAC

Clone NameB6Ng01-232F19
Chromosome2 (Build37)
Map Location 151,227,850 - 151,429,785
singlet/doubletdoublet
Overlap geneLOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph
Upstream geneOTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839
Downstream geneLOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232F19.bB6Ng01-232F19.g
ACCGA044719GA044720
length9251,115
definitionB6Ng01-232F19.b B6Ng01-232F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,227,850 - 151,228,566)(151,428,683 - 151,429,785)
sequence
gaattcactctgtagaccacgctggcctcaaactcagaaatctgcctgcc
tctgcctcccgagtgctggttataaatctttttagcttcaagaacttcct
gggatttgtgaggttttttttttttttttttttttttttggagatttgtg
agcctcccacctcccaccttcaacctggagggaatatttgaatcctgggg
ggaaataagagaagccaacaaaaatggtacacaacattctatcccttaat
ctggctcctacaatccttctgttccctcttttgcagtattccctgatctt
tgaagagaatgattgagatgcgtgtttagaggcagtttgacataatcgtc
acatccattgaataaagaaagagcaattacttccctactggagctttgaa
ctcacagccacaggtttctatctggcttacagtaccaggcatagattcct
tctctgtaataccagacataaattccttctgatgctgcatatcttaaatc
caatgagaaagatatggttgtatccttactaataatagcatattcacacc
aacaaactaccatattagggttagttctgtgctaccatggaaagaggctt
ttccaaaagaccttcactacaacttttattttggtaagcttgtctttatg
gctgctagggagagtcattgattgatggactccattttttttggttatgc
cttaatggtgctagcagctgccattctagcactaaaactgagcttctgct
ccttcccatgaatgagaaaaaaccgacactgcaattcattcactgagagt
attttgtttatggccaccaatcttagccctctgaggttctggtggtttct
gacaggaagagatactgcagcaaaatatcacaccgtagttagcctatctt
agaaagattttagcttgttctaaaa
gaattcaaccccaggtctgttcagccctatttctgcagcctttcagctct
tgctcctcattataagcccttaggcagcactgggcatggggatgaccaat
caaagaggcagatgtttgtgcagttgctatggagtgtgcacaatggggaa
acagggacactggtgtgaaaaggggtgggtgcccttggggttgaagggac
gagagattgttggctgtgctcccgtgacttagggtttcctttcaccttct
attccaagtggctgcctccagctgcctggggacaggcctgtgggactcca
ggctgaacaggcaacgtggcaataaatgccatggcaacatgcctcctctc
tcgggctatgatgagagggaggagttaagaagacacaggacactcactgg
ggcctctgagcaggatcctgaagaggaggcaccctatgggactgggtggc
ttctgccttcccaagagggaccctgcctgtgaggtcccatcccagcaggg
gaaatgccacttctactctgccccaaattaatagctggttctggcctccc
aggagactgttaactgtgtccaggtacaaatgccactccattcccaccca
cagccagggaggaaggaaaacagaactcaagaggagggagaaacaggttg
ccaagcaaggtggtagcagaggcagctgggacaaagctcgcattgtacca
gggccacatgcagttcccatctaagcctctctcacctgtctctcagggcc
tgggcctggagctccacctgggctctgctgactgttcagccacactcgtc
cgagctggcgtggtagagaagctatcctgggaggtgagacctgcttgaag
gtgctttcctccctcttgacagtcagcctaaaagccaagagtaaagtgtt
gatggggaacagagagagttaaagagattggactagctcaaatgaaagag
agctgctagcaggttaacttgaccacagagggactacttctggtagcagg
cagtctctcaagctttttgtccactcataagcagaatacatcaaccccta
cctattcatctccagctgctcccaccatgtttctctggtgcctggagaaa
gggaacccctgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_151227850_151228566
seq2: B6Ng01-232F19.b_49_764

seq1  GAATTCACTCTGTAGACCACGCTGGCCTCAAACTCAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCACGCTGGCCTCAAACTCAGAAATCTGCCTGCC  50

seq1  TCTGCCTCCCGAGTGCTGGTTATAAATCTTTTTAGCTTCAAGAACTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCGAGTGCTGGTTATAAATCTTTTTAGCTTCAAGAACTTCCT  100

seq1  GGGATTTGTGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATTTGT  150
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGATTTGTGAGG-TTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATTTGT  149

seq1  GAGCCTCCCACCTCCCACCTTCAACCTGGAGGGAATATTTGAATCCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCCCACCTCCCACCTTCAACCTGGAGGGAATATTTGAATCCTGGG  199

seq1  GGGAAATAAGAGAAGCCAACAAAAATGGTACACAACATTCTATCCCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATAAGAGAAGCCAACAAAAATGGTACACAACATTCTATCCCTTAA  249

seq1  TCTGGCTCCTACAATCCTTCTGTTCCCTCTTTTGCAGTATTCCCTGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCCTACAATCCTTCTGTTCCCTCTTTTGCAGTATTCCCTGATCT  299

seq1  TTGAAGAGAATGATTGAGATGCGTGTTTAGAGGCAGTTTGACATAATCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAGAATGATTGAGATGCGTGTTTAGAGGCAGTTTGACATAATCGT  349

seq1  CACATCCATTGAATAAAGAAAGAGCAATTACTTCCCTACTGGAGCTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCATTGAATAAAGAAAGAGCAATTACTTCCCTACTGGAGCTTTGA  399

seq1  ACTCACAGCCACAGGTTTCTATCTGGCTTACAGTACCAGGCATAGATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGCCACAGGTTTCTATCTGGCTTACAGTACCAGGCATAGATTCC  449

seq1  TTCTCTGTAATACCAGACATAAATTCCTTCTGATGCTGCATATCTTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTAATACCAGACATAAATTCCTTCTGATGCTGCATATCTTAAAT  499

seq1  CCAATGAGAAAGATATGGTTGTATCCTTACTAATAATAGCATATTCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAGAAAGATATGGTTGTATCCTTACTAATAATAGCATATTCACAC  549

seq1  CAACAAACTACCATATTAGGGTTAGTTCTGTGCTACCATGGAAAGAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACTACCATATTAGGGTTAGTTCTGTGCTACCATGGAAAGAGGCT  599

seq1  TTTCCAAAAGACCTTCACTACAACTTTTATTTTGGTAAGCTTGTCTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAAGACCTTCACTACAACTTTTATTTTGGTAAGCTTGTCTTTAT  649

seq1  GGCTGCTAGGGAGAGTCATTGATTGATGGACTCCA-TTTTTTTGGTTATG  699
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGCTGCTAGGGAGAGTCATTGATTGATGGACTCCATTTTTTTTGGTTATG  699

seq1  CCTTAGATGGTGCTAGCA  717
      ||||| ||||||||||||
seq2  CCTTA-ATGGTGCTAGCA  716

seq1: chr2_151428683_151429785
seq2: B6Ng01-232F19.g_69_1183 (reverse)

seq1  CACACAGGGG-TCCCTGTCTCCAGGGCACAGAAGAACATGGTGGGAGCAG  49
      |||||||||| ||||| ||||||||   ||||  ||||||||||||||||
seq2  CACACAGGGGTTCCCTTTCTCCAGGCACCAGAGAAACATGGTGGGAGCAG  50

seq1  CTGGAGTTGGATAGGTAGGGGGTGATGGTATCTGCTTATGAGTGGAC--A  97
      |||||| || ||||||||||| |||||   |||||||||||||||||  |
seq2  CTGGAGATGAATAGGTAGGGGTTGATGTATTCTGCTTATGAGTGGACAAA  100

seq1  AAGCTTGGAGGACTGCCTGCTA-CAG-AGTGGTTCCTCTGTGGTC-AGGT  144
      |||||||   |||||||||||| ||| ||| || ||||||||||| || |
seq2  AAGCTTGAGAGACTGCCTGCTACCAGAAGTAGTCCCTCTGTGGTCAAGTT  150

seq1  GACCTGCTAGCAGCTCTCTTTCATTTGAGCTAGTCC-ATCTCTTT-ACTC  192
       ||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  AACCTGCTAGCAGCTCTCTTTCATTTGAGCTAGTCCAATCTCTTTAACTC  200

seq1  TCTCTGTT-CCCATCAACACTTTACTCTTGGC-TTTAGGCTGACTGTCAA  240
      |||||||| ||||||||||||||||||||||| |||||||||||||||||
seq2  TCTCTGTTCCCCATCAACACTTTACTCTTGGCTTTTAGGCTGACTGTCAA  250

seq1  GAGGGAGG-AAGCACCTTC-AGCAGGTCTCACCTCCCAGGATAGCTTCTC  288
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  GAGGGAGGAAAGCACCTTCAAGCAGGTCTCACCTCCCAGGATAGCTTCTC  300

seq1  TACCACGCCAGCTCGGACGAGTGTGGCTGAACAGTCAGCAGAGCCCAGGT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACGCCAGCTCGGACGAGTGTGGCTGAACAGTCAGCAGAGCCCAGGT  350

seq1  GGAGCTCCAGGCCCAGGCCCTGAGAGACAGGTGAGAGAGGCTTAGATGGG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCCAGGCCCAGGCCCTGAGAGACAGGTGAGAGAGGCTTAGATGGG  400

seq1  AACTGCATGTGGCCCTGGTACAATGCGAGCTTTGTCCCAGCTGCCTCTGC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCATGTGGCCCTGGTACAATGCGAGCTTTGTCCCAGCTGCCTCTGC  450

seq1  TACCACCTTGCTTGGCAACCTGTTTCTCCCTCCTCTTGAGTTCTGTTTTC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCTTGCTTGGCAACCTGTTTCTCCCTCCTCTTGAGTTCTGTTTTC  500

seq1  CTTCCTCCCTGGCTGTGGGTGGGAATGGAGTGGCATTTGTACCTGGACAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCCTGGCTGTGGGTGGGAATGGAGTGGCATTTGTACCTGGACAC  550

seq1  AGTTAACAGTCTCCTGGGAGGCCAGAACCAGCTATTAATTTGGGGCAGAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACAGTCTCCTGGGAGGCCAGAACCAGCTATTAATTTGGGGCAGAG  600

seq1  TAGAAGTGGCATTTCCCCTGCTGGGATGGGACCTCACAGGCAGGGTCCCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGGCATTTCCCCTGCTGGGATGGGACCTCACAGGCAGGGTCCCT  650

seq1  CTTGGGAAGGCAGAAGCCACCCAGTCCCATAGGGTGCCTCCTCTTCAGGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAAGGCAGAAGCCACCCAGTCCCATAGGGTGCCTCCTCTTCAGGA  700

seq1  TCCTGCTCAGAGGCCCCAGTGAGTGTCCTGTGTCTTCTTAACTCCTCCCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCAGAGGCCCCAGTGAGTGTCCTGTGTCTTCTTAACTCCTCCCT  750

seq1  CTCATCATAGCCCGAGAGAGGAGGCATGTTGCCATGGCATTTATTGCCAC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCATAGCCCGAGAGAGGAGGCATGTTGCCATGGCATTTATTGCCAC  800

seq1  GTTGCCTGTTCAGCCTGGAGTCCCACAGGCCTGTCCCCAGGCAGCTGGAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTGTTCAGCCTGGAGTCCCACAGGCCTGTCCCCAGGCAGCTGGAG  850

seq1  GCAGCCACTTGGAATAGAAGGTGAAAGGAAACCCTAAGTCACGGGAGCAC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCACTTGGAATAGAAGGTGAAAGGAAACCCTAAGTCACGGGAGCAC  900

seq1  AGCCAACAATCTCTCGTCCCTTCAACCCCAAGGGCACCCACCCCTTTTCA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACAATCTCTCGTCCCTTCAACCCCAAGGGCACCCACCCCTTTTCA  950

seq1  CACCAGTGTCCCTGTTTCCCCATTGTGCACACTCCATAGCAACTGCACAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTGTCCCTGTTTCCCCATTGTGCACACTCCATAGCAACTGCACAA  1000

seq1  ACATCTGCCTCTTTGATTGGTCATCCCCATGCCCAGTGCTGCCTAAGGGC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGCCTCTTTGATTGGTCATCCCCATGCCCAGTGCTGCCTAAGGGC  1050

seq1  TTATAATGAGGAGCAAGAGCTGAAAGGCTGCAGAAATAGGGCTGAACAGA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGAGGAGCAAGAGCTGAAAGGCTGCAGAAATAGGGCTGAACAGA  1100

seq1  CCTGGGGTTGAATTC  1103
      |||||||||||||||
seq2  CCTGGGGTTGAATTC  1115