BAC Information

Click to search

BAC

Clone NameB6Ng01-235F08
Chromosome2 (Build37)
Map Location 108,783,215 - 108,784,210
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043078, LOC668790, LOC623003, LOC100043423
Downstream geneLOC623031, Mett5d1, Kif18a, Bdnf, LOC100043427, Lin7c, Lgr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235F08.bB6Ng01-235F08.g
ACCGA046834GA046835
length9961,194
definitionB6Ng01-235F08.b B6Ng01-235F08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaagccgggcatggtggtgcatgcctttaatcccagcacttgg
gaggcagaggcatgtggatttctgagttcgaggccagcttggtctacaaa
gtgagttctaggacagccagggctatacagagaaaccctgtctcgaaaaa
acaacaacaatgaaaaaaaaaaaacaaaaacaaaaacaaaaaaagaattc
ttagctgtgctaatgctgatacaaacgaacctacctttatattgtgggtg
ggacctaaaagggggcaatggagatgaagggagaaaagagagaagagcga
ttctacctttctacataagagcatctgcatcactagctcctattgtttct
taacttatgcatgaaaaatttaattgaaaatcagaaaatatcatagatat
taaaatatgttcttgatcctgacagttgaataataacattaccaagtgtt
attaagtcttaataggggccgtggaccttttcttttcctttttagtgaga
gaatacaatatgacctcaggtagacaggagcatgacttgaaccaagattt
tgaaacaagcctaagaaacaatcatcaaaaccaaaacccaaaagaaagaa
tgtatactgtgttgaaagtgcctgtgttgcttcccctgttttgttcctga
atcaaacttcactgaatcaatacgtatcaatcaacagtatgaaaatttcc
tctaacaaaaatagttagaacagaaaacatggtacctttggtatgccagg
attcatgtaagagtcctaaaaataccaccttatttaacatccttggtaac
caaaaagtgtaatttcattgtccctattacaaaggcaaaacatttgaagg
attgaaaggtgaaatggctttcccatagccacattatcaatggatgcaaa
gcagtttctggatccaaggcacactgactatggatgctttatatgctttg
aattttaaaaagtgtgtgggtgtctatgtatgcctggataacatat
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagattca
ttaggtcccatttgttaattctcgatcttacagcacaagacattgctgtt
ctgttcaggaattttccccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttaagtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagcttccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctgtataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctaa
gagggaaactcatagctctgagtgcctccaagaagaaacgggagagagca
catactagtagcttgacaacacatctaaaagctctagaaaaaaaggaagc
aaattcacccaagaggagtagacggcaggaaataatcaaactcaggggtg
aaatcaaccaagtggaaacaagaagaactattcaaagaattaaccaaacg
aggagttggttctttgagaaatcaacaagatagataacccttagctagac
tcactaaaggacacagggacaaatcctaattaacaaaatcagaatgaaaa
gggagacataacaacagatctgaaggaatccaaacaccatcagatcttct
acgagagggctatactcaacaaactggaaacctgggacgaaatggacaat
ttctggacagataccaggtaccaagtggatcaggatcagtgacaatctaa
acaggtccattatcacctaggaatagaagcagtatatatcctcagcaaac
aagtccgggaaccgaacgggtttagttgcacgagaattctacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_108783215_108784210
seq2: B6Ng01-235F08.b_46_1041

seq1  GAATTCTTAAGCCGGGCATGGTGGTGCATGCCTTTAATCCCAGCACTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGCCGGGCATGGTGGTGCATGCCTTTAATCCCAGCACTTGG  50

seq1  GAGGCAGAGGCATGTGGATTTCTGAGTTCGAGGCCAGCTTGGTCTACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCATGTGGATTTCTGAGTTCGAGGCCAGCTTGGTCTACAAA  100

seq1  GTGAGTTCTAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCTAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAA  150

seq1  ACAACAACAATGAAAAAAAAAAAACAAAAACAAAAACAAAAAAAGAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAATGAAAAAAAAAAAACAAAAACAAAAACAAAAAAAGAATTC  200

seq1  TTAGCTGTGCTAATGCTGATACAAACGAACCTACCTTTATATTGTGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGTGCTAATGCTGATACAAACGAACCTACCTTTATATTGTGGGTG  250

seq1  GGACCTAAAAGGGGGCAATGGAGATGAAGGGAGAAAAGAGAGAAGAGCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTAAAAGGGGGCAATGGAGATGAAGGGAGAAAAGAGAGAAGAGCGA  300

seq1  TTCTACCTTTCTACATAAGAGCATCTGCATCACTAGCTCCTATTGTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTTTCTACATAAGAGCATCTGCATCACTAGCTCCTATTGTTTCT  350

seq1  TAACTTATGCATGAAAAATTTAATTGAAAATCAGAAAATATCATAGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTATGCATGAAAAATTTAATTGAAAATCAGAAAATATCATAGATAT  400

seq1  TAAAATATGTTCTTGATCCTGACAGTTGAATAATAACATTACCAAGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATGTTCTTGATCCTGACAGTTGAATAATAACATTACCAAGTGTT  450

seq1  ATTAAGTCTTAATAGGGGCCGTGGACCTTTTCTTTTCCTTTTTAGTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTCTTAATAGGGGCCGTGGACCTTTTCTTTTCCTTTTTAGTGAGA  500

seq1  GAATACAATATGACCTCAGGTAGACAGGAGCATGACTTGAACCAAGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAATATGACCTCAGGTAGACAGGAGCATGACTTGAACCAAGATTT  550

seq1  TGAAACAAGCCTAAGAAACAATCATCAAAACCAAAACCCAAAAGAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAAGCCTAAGAAACAATCATCAAAACCAAAACCCAAAAGAAAGAA  600

seq1  TGTATACTGTGTTGAAAGTGCCTGTGTTGCTTCCCCTGTTTTGTTCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACTGTGTTGAAAGTGCCTGTGTTGCTTCCCCTGTTTTGTTCCTGA  650

seq1  ATCAAACTTCACTGAATCAATACGTATCAATCAACAGTATGAAAATTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTTCACTGAATCAATACGTATCAATCAACAGTATGAAAATTTCC  700

seq1  TCTAACAAAAATAGTTAGAACAGAAAACATGGTACCTTTGGTATGCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAAAAATAGTTAGAACAGAAAACATGGTACCTTTGGTATGCCAGG  750

seq1  ATTCATGTAAGAGTCCTAAAAATACCACCTTATTTAACATCCTTGGTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGTAAGAGTCCTAAAAATACCACCTTATTTAACATCCTTGGTAAC  800

seq1  CAAAAAGTGTAATTTCATTGTCCCTATTACAAAGGCAAAACATTTGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGTGTAATTTCATTGTCCCTATTACAAAGGCAAAACATTTGAAGG  850

seq1  ATTGAAAGGTGAAATGGCTTTCCCATAGCCACATTATCAATGGATGCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGGTGAAATGGCTTTCCCATAGCCACATTATCAATGGATGCAAA  900

seq1  GCAGTTTCTGGATCCAAGGCACACTGACTATGGATGCTTTATATGCTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTCTGGATCCAAGGCACACTGACTATGGATGCTTTATATGCTTTG  950

seq1  AATTTTTAAAAAGTGTGTGGGTGTCTATGTATGCCTGGAT-ACATAT  996
      || ||||||||||||||||||||||||||||||||||||| ||||||
seq2  AA-TTTTAAAAAGTGTGTGGGTGTCTATGTATGCCTGGATAACATAT  996