BAC Information

Click to search

BAC

Clone NameB6Ng01-235M04
Chromosome2 (Build37)
Map Location 35,874,610 - 36,008,941
singlet/doubletdoublet
Overlap geneNdufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf
Upstream geneHc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11
Downstream geneLOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235M04.bB6Ng01-235M04.g
ACCGA047156GA047157
length1,021972
definitionB6Ng01-235M04.b B6Ng01-235M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,008,371 - 36,008,941)(35,874,610 - 35,875,573)
sequence
gaattccttactggtaccaaggtgagtaaccattctagtttgcctggact
taaagcctttcctatggtaggacagttcatcgctgatggatgtcaggaca
gaaactcaagcagggctggggcctggcgcagcagctgatgcagaagccat
ggaggaactgcttaccggctttactggcttttccccatgcttctttgctt
gcttctatttttttttattagatattttctttatttacatttcaaatgct
atcctgaaagtcccctataccctccccccgccccgccctgctcccctacc
cacccactcctgcttcttggccctggcgttcccgtactggggcatatata
atcttcataagaccaagggcctctcctcccaatgatggccgactaggcca
ccttctgctacatatgcagctagagacacgagctctgggggtactggtta
gttcatattgttgttccacctatagggttacagacctctttagctccttg
ggtactttctctagctcctccattgggggccatgtgttccatccaataaa
tgactgtgagcatccatttctctatttgccaggcattggcatagcctcac
aggagacagctcttttttcgagacagggtttctctgtgtagccctggctg
tcctggaactcactctgtagaccaggctggcctcgaactcagaaatccgc
ctgcctctgcctcccaagtgctgggattaaaggcgtgtgctaccactgcc
cagctcagcctgcttttcttatagaacccaggaccaccagcccaggggtg
gccctcccccatcaattattaaattaagaaaatgcccctacaggcctgcc
tacagcctgatcttctagaggcacttcctcagttgaggctccctcctctc
agttgactgtgacttaggtggggttgacacacaactaactatctagcttc
agagctgaaactgaaaaggatggatccgcttttcaacactcttgccactc
agctacaacaccacaaaagaa
gaattctcctaaaatagggacggggtttcgttttctctctctcttgcttc
ttgctctcttttcctgaagatgtaagaataaagctttgccgcagaagatt
ctggtctgtggtgttcttcctggccggtcgtgagaacgcgtcgaataaca
gtggcagccattgctttcagctgtgtgcccattagtgatcccaccaggct
cccgtaaatggtttcgattccgtggccacacaggtggccctggttaatct
aaactagtcataaagcaaaaccaaaagccatgaaccttggaaatgaacag
gaggaaggtggggtgggggtgcagagatgtatgcattcgggagagtagcc
agattgcaattttgtatgtgtatgaagttgttaagaactaaattaataaa
gacagtaataaggaagagagcaatggagtatctgatagcacctgcacatg
cagacttgtgtaccacaccaaacatgcacacacacactacacatgcacac
cacacacacacacactacacatgcacacacacacacacataccacacaca
cacaaaccacacacaataccacacacacaaaccacatacacacacaccac
acatacatacatacactacaccccacacacactatacacacaaacatacc
atacacaccaccacatacatacacaccacacacacactacacatgcacac
atacacacatacacacaccacatatatacacatactacacacactacaca
tgcacacacacacaccgcacaatatacacatactacacacactacacatg
tacacacacacaccacacacaccacacacaacacacacacacataaataa
caaacaaaatccttgttattattatagccctagaaacctatctccagcac
cttgtacatagtaaaaggttcgatagaaatcttatcacacaagcagactc
ggatgagggactgaacccaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_36008371_36008941
seq2: B6Ng01-235M04.b_47_617 (reverse)

seq1  AGAAATGGATGCTCACAGTCATTTATTGGATGGAACACATGGCCCCCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGATGCTCACAGTCATTTATTGGATGGAACACATGGCCCCCAAT  50

seq1  GGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGAGGTCTGTAACCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGAGGTCTGTAACCCTAT  100

seq1  AGGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCGTGTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCGTGTCTCT  150

seq1  AGCTGCATATGTAGCAGAAGGTGGCCTAGTCGGCCATCATTGGGAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATATGTAGCAGAAGGTGGCCTAGTCGGCCATCATTGGGAGGAGA  200

seq1  GGCCCTTGGTCTTATGAAGATTATATATGCCCCAGTACGGGAACGCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTGGTCTTATGAAGATTATATATGCCCCAGTACGGGAACGCCAGG  250

seq1  GCCAAGAAGCAGGAGTGGGTGGGTAGGGGAGCAGGGCGGGGCGGGGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAAGCAGGAGTGGGTGGGTAGGGGAGCAGGGCGGGGCGGGGGGAG  300

seq1  GGTATAGGGGACTTTCAGGATAGCATTTGAAATGTAAATAAAGAAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGGGGACTTTCAGGATAGCATTTGAAATGTAAATAAAGAAAATAT  350

seq1  CTAATAAAAAAAAATAGAAGCAAGCAAAGAAGCATGGGGAAAAGCCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAAAAAAATAGAAGCAAGCAAAGAAGCATGGGGAAAAGCCAGTA  400

seq1  AAGCCGGTAAGCAGTTCCTCCATGGCTTCTGCATCAGCTGCTGCGCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGGTAAGCAGTTCCTCCATGGCTTCTGCATCAGCTGCTGCGCCAGG  450

seq1  CCCCAGCCCTGCTTGAGTTTCTGTCCTGACATCCATCAGCGATGAACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCCTGCTTGAGTTTCTGTCCTGACATCCATCAGCGATGAACTGT  500

seq1  CCTACCATAGGAAAGGCTTTAAGTCCAGGCAAACTAGAATGGTTACTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCATAGGAAAGGCTTTAAGTCCAGGCAAACTAGAATGGTTACTCAC  550

seq1  CTTGGTACCAGTAAGGAATTC  571
      |||||||||||||||||||||
seq2  CTTGGTACCAGTAAGGAATTC  571

seq1: chr2_35874610_35875573
seq2: B6Ng01-235M04.g_67_1038

seq1  GAATTCTCCTAAAATAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTAAAATAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTTC  50

seq1  TTGCTCTCTTTTCCTGAAGATGTAAGAATAAAGCTTTGCCGCAGAAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCTTTTCCTGAAGATGTAAGAATAAAGCTTTGCCGCAGAAGATT  100

seq1  CTGGTCTGTGGTGTTCTTCCTGGCCGGTCGTGAGAACGCGTCGAATAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTGTGGTGTTCTTCCTGGCCGGTCGTGAGAACGCGTCGAATAACA  150

seq1  GTGGCAGCCATTGCTTTCAGCTGTGTGCCCATTAGTGATCCCACCAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGCCATTGCTTTCAGCTGTGTGCCCATTAGTGATCCCACCAGGCT  200

seq1  CCCGTAAATGGTTTCGATTCCGTGGCCACACAGGTGGCCCTGGTTAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTAAATGGTTTCGATTCCGTGGCCACACAGGTGGCCCTGGTTAATCT  250

seq1  AAACTAGTCATAAAGCAAAACCAAAAGCCATGAACCTTGGAAATGAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGTCATAAAGCAAAACCAAAAGCCATGAACCTTGGAAATGAACAG  300

seq1  GAGGAAGGTGGGGTGGGGGTGCAGAGATGTATGCATTCGGGAGAGTAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGTGGGGTGGGGGTGCAGAGATGTATGCATTCGGGAGAGTAGCC  350

seq1  AGATTGCAATTTTGTATGTGTATGAAGTTGTTAAGAACTAAATTAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCAATTTTGTATGTGTATGAAGTTGTTAAGAACTAAATTAATAAA  400

seq1  GACAGTAATAAGGAAGAGAGCAATGGAGTATCTGATAGCACCTGCACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAATAAGGAAGAGAGCAATGGAGTATCTGATAGCACCTGCACATG  450

seq1  CAGACTTGTGTACCACACCAAACATGCACACACACACTACACATGCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTGTGTACCACACCAAACATGCACACACACACTACACATGCACAC  500

seq1  CACACACACACACACTACACATGCACACACACACACACATACCACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACTACACATGCACACACACACACACATACCACACACA  550

seq1  CACAAACCACACACAATACCACACACACAAACCACATACACACACACCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACCACACACAATACCACACACACAAACCACATACACACACACCAC  600

seq1  ACATACATACATACACTACACCCCACACACACTATACACACAAACATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACATACACTACACCCCACACACACTATACACACAAACATACC  650

seq1  ATACACACCACCACATACATACACACCACACACACACTACACATGCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACCACCACATACATACACACCACACACACACTACACATGCACAC  700

seq1  ATACACACATACACACACCACATATATACACATACTACACACACTACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACATACACACACCACATATATACACATACTACACACACTACACA  750

seq1  TGCACACACACACACCGCAC-ATATACACATACTACACACACTACACATG  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCACACACACACACCGCACAATATACACATACTACACACACTACACATG  800

seq1  TACACACACACACCACACACACCACACACACCACACACACACATAAATAA  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TACACACACACACCACACACACCACACACAACACACACACACATAAATAA  850

seq1  CAAAC-AAATCCTTGTTTATTATTATAGCCCTAG-AACCTATCT-CAGCA  896
      ||||| ||||||||| |||||||||||||||||| ||||||||| |||||
seq2  CAAACAAAATCCTTG-TTATTATTATAGCCCTAGAAACCTATCTCCAGCA  899

seq1  CCTTGTACATAGT-AAAGGTTCGATAGAAATC-TATCACACAAGCAGA--  942
      ||||||||||||| |||||||||||||||||| |||||||||||||||  
seq2  CCTTGTACATAGTAAAAGGTTCGATAGAAATCTTATCACACAAGCAGACT  949

seq1  CAGATGA-GGACTGAACCAAAAA  964
      | ||||| |||||||||| ||||
seq2  CGGATGAGGGACTGAACCCAAAA  972