BAC Information

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BAC

Clone NameB6Ng01-236M06
Chromosome2 (Build37)
Map Location 48,606,565 - 48,607,674
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383691, LOC100041457
Downstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236M06.bB6Ng01-236M06.g
ACCGA047904GA047905
length4751,100
definitionB6Ng01-236M06.b B6Ng01-236M06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tctgtttagctctataccccattttttaattgggtcatttggtttgttgg
tgtctagtttccggagttctttatatattttggatattagccatctgtca
gatacagggttggtgaaagtcccattctttaggctgccactttgtcctac
tgaccgtgtcctctgccttacagaagctttccagtttcataaggtcctgt
ttaattgttgatcttagtacctgagctgtcaggaagttgtctcctgtgcc
aatgcatgtgaggctattccccacttcctcttctatcagattgagtgtat
caggtctttgacccacttggacttgagttttgtgcaaggtaataagtcat
ggatctatttacattcttttacatgcattcatccagttagaccagcacca
tttgttgaagatatcctctagaggcctccccttctctaaggagacaagca
gggagggagtgggggaggggaaagg

gaattcctggggatgaacccaatgttgtcatctgtcatctgctatactcg
gatacagatacataggcctgcacacacacacacacacacacacacacaca
cacacacacacacacacttgttactgtcgttattattataagaatttccc
agtttttaagatcatttttgtgctttgcagaaagggttgtcagttcccct
ttcacagctggggagcacacaaacaaggtatttcatcccagaacctgtgt
ttttaatcacatctgctatctctacgatggagcatagaaggaagagaaag
aacgtattctcggtttccaattactgtcttggtctttacaaagtggaaaa
ggctgtgaagaaaatcacgtgggcaacttgtcattagaaacaacatagac
acaattgtcctttatctttctaactttaaaaagctacagcttcagtgtag
ccggaattgacagcatctgagttatgaattagctcgggagctgccttctt
tgatgtcaaaaagacatttgatttggtgtgggaaaacaatacaatacaat
acagttttttaagggtaacttctgagctgaactcaagatttgctttttaa
ataaaaaaaaaaaaaaaccaatctgtaatcttcagtcaccaatggctgat
ttccagcttctattttgaaagtgataattagccatggaatttttttctaa
ctttgttatgtaaatcacaccttgggtggggggagttggacaaaatagca
caatagcaatagaaaaccattttaccctgaatgattttattttttatcta
ctcagtcagatgagacacatgctcgactcttttgccatattcaatgactc
ctgaagcatttgaaagagcattcggtccctgatgtatttcaaagaccaat
gtctggttttagtcattctaagctaacatacaacccagggttcctcagtc
ttgggttcctatccttgactagagactcattacagactcttcagccattt
aacctagtacttttctttacatcacatttccttccccgctcatttacaac
tctgctctggagaggaagataaataatccctgtcaggtgtttcaattctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_48606565_48607674
seq2: B6Ng01-236M06.g_66_1165

seq1  GAATTCCTGGGGATGAACCCAATGTTGTCATCTGTCATCTGCTATACTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGGATGAACCCAATGTTGTCATCTGTCATCTGCTATACTCG  50

seq1  GATACAGATACATAGGCCTGCACACACACACACACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGATACATAGGCCTGCACACACACACACACACACACACACACACA  100

seq1  CACACACACACACACACTTGTTACTGTCGTTATTATTATAAGAATTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACTTGTTACTGTCGTTATTATTATAAGAATTTCCC  150

seq1  AGTTTTTAAGATCATTTTTGTGCTTTGCAGAAAGGGTTGTCAGTTCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTAAGATCATTTTTGTGCTTTGCAGAAAGGGTTGTCAGTTCCCCT  200

seq1  TTCACAGCTGGGGAGCACACAAACAAGGTATTTCATCCCAGAACCTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGCTGGGGAGCACACAAACAAGGTATTTCATCCCAGAACCTGTGT  250

seq1  TTTTAATCACATCTGCTATCTCTACGATGGAGCATAGAAGGAAGAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCACATCTGCTATCTCTACGATGGAGCATAGAAGGAAGAGAAAG  300

seq1  AACGTATTCTCGGTTTCCAATTACTGTCTTGGTCTTTACAAAGTGGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTATTCTCGGTTTCCAATTACTGTCTTGGTCTTTACAAAGTGGAAAA  350

seq1  GGCTGTGAAGAAAATCACGTGGGCAACTTGTCATTAGAAACAACATAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGAAGAAAATCACGTGGGCAACTTGTCATTAGAAACAACATAGAC  400

seq1  ACAATTGTCCTTTATCTTTCTAACTTTAAAAAGCTACAGCTTCAGTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGTCCTTTATCTTTCTAACTTTAAAAAGCTACAGCTTCAGTGTAG  450

seq1  CCGGAATTGACAGCATCTGAGTTATGAATTAGCTCGGGAGCTGCCTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAATTGACAGCATCTGAGTTATGAATTAGCTCGGGAGCTGCCTTCTT  500

seq1  TGATGTCAAAAAGACATTTGATTTGGTGTGGGAAAACAATACAATACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCAAAAAGACATTTGATTTGGTGTGGGAAAACAATACAATACAAT  550

seq1  ACAGTTTTTTAAGGGTAACTTCTGAGCTGAACTCAAGATTTGCTTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTTTAAGGGTAACTTCTGAGCTGAACTCAAGATTTGCTTTTTAA  600

seq1  ATAAAAAAAAAAAAAAAACAATCTGTAATCTTCAGTCACCAATGGCTGAT  650
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAAAAAAAAACCAATCTGTAATCTTCAGTCACCAATGGCTGAT  650

seq1  TTCCAGCTTCTATTTTGAAAGTGATAATTAGCCATGGAATTTTTTTCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTTCTATTTTGAAAGTGATAATTAGCCATGGAATTTTTTTCTAA  700

seq1  CTTTGTTATGTAAATCACACCTTGGGTGGGGGGAGTTGGACAAAATAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTATGTAAATCACACCTTGGGTGGGGGGAGTTGGACAAAATAGCA  750

seq1  CAATAGCAATAGAAAACCATTTTACCCTGAATGATTTTATTTTTTATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCAATAGAAAACCATTTTACCCTGAATGATTTTATTTTTTATCTA  800

seq1  CTCAGTCAGATGAGACACATGCTCGACTCTTTTGCCATATTCAATGACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCAGATGAGACACATGCTCGACTCTTTTGCCATATTCAATGACTC  850

seq1  CTGAAGCATTTGAAAGAGCATTCGGTCCCTGATGTATTTCAAAGACCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCATTTGAAAGAGCATTCGGTCCCTGATGTATTTCAAAGACCAAT  900

seq1  GTCTGGTTTTAGTCATTCTAAGCTAACATACAACCCAGGGTTCCTCAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCTGGTTTTAGTCATTCTAAGCTAACATACAACCCAGGGTTCCTCA-GT  949

seq1  CTTGGGTTCCTATCCCTTGACTAGAGACTCATTACAGACTCTTCAGCCAT  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTCCTAT-CCTTGACTAGAGACTCATTACAGACTCTTCAGCCAT  998

seq1  TTAAACCTTAAGTACTTTTTTCTTTTACATCACATTTCCTTCCCCGCTCC  1050
      || |||||  |||||||||    ||||||||||||||||||||||||| |
seq2  TT-AACCT--AGTACTTTT---CTTTACATCACATTTCCTTCCCCGCT-C  1041

seq1  ATTTACAACTCTGCTCTGGAGAGG-AGATAAATAAATCCCTGTCAGTGTT  1099
      |||||||||||||||||||||||| |||||||| |||||||||||| || 
seq2  ATTTACAACTCTGCTCTGGAGAGGAAGATAAAT-AATCCCTGTCAG-GTG  1089

seq1  TTAAAATTCTC  1110
      ||  |||||||
seq2  TTTCAATTCTC  1100


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