BAC Information

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BAC

Clone NameB6Ng01-238F20
Chromosome2 (Build37)
Map Location 154,732,735 - 154,900,454
singlet/doubletdoublet
Overlap genea, Ahcy
Upstream geneBpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2
Downstream geneItch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238F20.bB6Ng01-238F20.g
ACCGA049079GA049080
length1,101854
definitionB6Ng01-238F20.b B6Ng01-238F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,732,735 - 154,733,837)(154,899,605 - 154,900,454)
sequence
gaattcttagggaaaggaaattgttgcagccttaggaggccacacgcgcc
tttcctacggtctctcctctctgataatgcccaaggtaagaggttgctcc
aataaacattccttcctaggatatgactaggcctgggtgaaaaagtcatt
tgtccatcttgtagaaaccttgatttaccactgaggcctctatcagctgt
gagccacacggtctgagtgctgggaaccaagctgggatcctctgcagtag
cagtacatgctgagccctttctccagctctgtagtcatcaaaataaacta
taaactctgcacctgcaccgtaagccaattccttttgtaaacgtcattag
tcctagttagggttcctattactatggtgaatgaacataccataaccaaa
agtctgggagccaagggtatttgggcttatacttccattttgtagcccat
tgctgaagaaaattagggcaggaacctggagacaggagctgatgtaaaga
caatggaggagtgctgtttactggcttgctcatcatggcttgctcagcct
gctttcttatagaacgcgggaccaccagcccaaggatggcatgacccaca
atgggctagggcctctcccatcaatcactaattaagaaaatatcttatag
ccagatgttacagaggcattttctcaagtgaggatccctcctctcaattg
agtatacactgtgtcgagttaacataaaactagccagtgtccttacaaag
agcagaacaacattttaaagaaaatcctgttacttttggcacaagaattg
gattctcgttttacattactgcattaaaatttaacttggatagtccctta
ggtaaattacattttgaaacatctattttttttaaaatgcctccttttat
tttgtaaaattagcatagacaccagcctacctgcaagcagccagagggtt
ggggtaagggaaactgggtcactcaatccgtttgccttcacattgcagca
gagtctttgtgttagggcttacagaccgtgacgtcttttgggagcagaac
caggacaatagcttaagcctggaacctggaaatgagctgtagggctggtc
t
gaattctgccttgttttgacctctgattcactggctggacggatgggaga
agaaccgcctctctccacgctccctcctagtcgagtgccaggggtccaaa
ggccacagtgcacaaaatttatgatttttgaggcagagatcagccttgct
cccgctccgctcaacgcctcgagctaggctccgcccctaagtttcagccc
ccagcaggttcatgaatattcaaataagaagatatttaaagacgccggcg
ccaggcgtagatccctgccccgcgccgcccggcccccttcactgagttca
tcagtcctagcggaagcgccgccagcatgtctgataaactgccctacaaa
gtcggtgagtcccaagggttcagtcctccgtggcgactcggctcccgtcc
tgggtttgttgtcagtaccgacctgcgtcttgtttaggtggcggcttcgg
ggcgccccgggacccctagaatcgctggcctggccgcgcaggtgcccggg
gattggagtccacacgccgccgagagccaggagtgggaaacggccgcgga
ctacaagtcccggcgtgccccgcggtaggcgcccagagcggcagcgcggg
ctgtgatctttggtcgggcagcgtgctcctgtcggagagactggccattg
ggaagcggccctagaggcccagaccctggccctggcgtttggcggcttgg
gtggcccctagcaagggcccaccgtcttctgggctttgagcagggccgga
gagagcatcagtgttctaggtgctaatgaggagaggcctggaaacgtgct
agtcttcggtgcaacgggaacttaggtcccatcttgctcaatcttctggg
ataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154732735_154733837
seq2: B6Ng01-238F20.b_46_1146

seq1  GAATTCTTAGGGAAAGGAAATTGTTGCAGCCTTAGGAGGCCACACGCGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGGAAAGGAAATTGTTGCAGCCTTAGGAGGCCACACGCGCC  50

seq1  TTTCCTACGGTCTCTCCTCTCTGATAATGCCCAAGGTAAGAGGTTGCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACGGTCTCTCCTCTCTGATAATGCCCAAGGTAAGAGGTTGCTCC  100

seq1  AATAAACATTCCTTCCTAGGATATGACTAGGCCTGGGTGAAAAAGTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACATTCCTTCCTAGGATATGACTAGGCCTGGGTGAAAAAGTCATT  150

seq1  TGTCCATCTTGTAGAAACCTTGATTTACCACTGAGGCCTCTATCAGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATCTTGTAGAAACCTTGATTTACCACTGAGGCCTCTATCAGCTGT  200

seq1  GAGCCACACGGTCTGAGTGCTGGGAACCAAGCTGGGATCCTCTGCAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACACGGTCTGAGTGCTGGGAACCAAGCTGGGATCCTCTGCAGTAG  250

seq1  CAGTACATGCTGAGCCCTTTCTCCAGCTCTGTAGTCATCAAAATAAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACATGCTGAGCCCTTTCTCCAGCTCTGTAGTCATCAAAATAAACTA  300

seq1  TAAACTCTGCACCTGCACCGTAAGCCAATTCCTTTTGTAAACGTCATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCTGCACCTGCACCGTAAGCCAATTCCTTTTGTAAACGTCATTAG  350

seq1  TCCTAGTTAGGGTTCCTATTACTATGGTGAATGAACATACCATAACCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTAGGGTTCCTATTACTATGGTGAATGAACATACCATAACCAAA  400

seq1  AGTCTGGGAGCCAAGGGTATTTGGGCTTATACTTCCATTTTGTAGCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGAGCCAAGGGTATTTGGGCTTATACTTCCATTTTGTAGCCCAT  450

seq1  TGCTGAAGAAAATTAGGGCAGGAACCTGGAGACAGGAGCTGATGTAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAGAAAATTAGGGCAGGAACCTGGAGACAGGAGCTGATGTAAAGA  500

seq1  CAATGGAGGAGTGCTGTTTACTGGCTTGCTCATCATGGCTTGCTCAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGGAGTGCTGTTTACTGGCTTGCTCATCATGGCTTGCTCAGCCT  550

seq1  GCTTTCTTATAGAACGCGGGACCACCAGCCCAAGGATGGCATGACCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTATAGAACGCGGGACCACCAGCCCAAGGATGGCATGACCCACA  600

seq1  ATGGGCTAGGGCCTCTCCCATCAATCACTAATTAAGAAAATATCTTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTAGGGCCTCTCCCATCAATCACTAATTAAGAAAATATCTTATAG  650

seq1  CCAGATGTTACAGAGGCATTTTCTCAAGTGAGGATCCCTCCTCTCAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTTACAGAGGCATTTTCTCAAGTGAGGATCCCTCCTCTCAATTG  700

seq1  AGTATACACTGTGTCGAGTTAACATAAAACTAGCCAGTGTCCTTACAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACACTGTGTCGAGTTAACATAAAACTAGCCAGTGTCCTTACAAAG  750

seq1  AGCAGAACAACATTTTAAAGAAAATCCTGTTACTTTTGGCACAAAGAATT  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCAGAACAACATTTTAAAGAAAATCCTGTTACTTTTGGCAC-AAGAATT  799

seq1  GGATTCTCGTTTTACATTACTGCATTAAAATTTAACTTGGATAGTCCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTCGTTTTACATTACTGCATTAAAATTTAACTTGGATAGTCCCTT  849

seq1  AGGTAAATTTACATTTTGAAACATCTA-TTTTTTTAAAATGCCTCCTTT-  898
      ||||||| ||||||||||||||||||| ||||||||||||||||||||| 
seq2  AGGTAAA-TTACATTTTGAAACATCTATTTTTTTTAAAATGCCTCCTTTT  898

seq1  -ATTTGTAAAAATAGCATAGACACCAG-CTACCTGCAAGCAGCCAGAGGG  946
        ||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  ATTTTGTAAAATTAGCATAGACACCAGCCTACCTGCAAGCAGCCAGAGGG  948

seq1  TTGGGGTAAGGG-AACTGGGTCACTCAATCCGTTTGCCTTCACATTGGCA  995
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  TTGGGGTAAGGGAAACTGGGTCACTCAATCCGTTTGCCTTCACATT-GCA  997

seq1  GGCAGAGGTCTTTTGTGTTAGGGCTTACAGGACCGTGGACGTC-TTTGGG  1044
       ||||| ||| |||||||||||||||||| |||||| |||||| ||||||
seq2  -GCAGA-GTC-TTTGTGTTAGGGCTTACA-GACCGT-GACGTCTTTTGGG  1042

seq1  AGCAGACCCAGGACAATAGCTTAAGCCTGGGACCT-GAGATGAAGCTGTA  1093
      |||||| ||||||||||||||||||||||| |||| || ||| |||||||
seq2  AGCAGAACCAGGACAATAGCTTAAGCCTGGAACCTGGAAATG-AGCTGTA  1091

seq1  GGGCTGGTCT  1103
      ||||||||||
seq2  GGGCTGGTCT  1101

seq1: chr2_154899605_154900454
seq2: B6Ng01-238F20.g_68_920 (reverse)

seq1  TATCCCAG-AGATTGAGC-AGATGGGACCCTAAGTTCCCGTTGCACCG-A  47
      |||||||| ||||||||| |||||||| |||||||||||||||||||| |
seq2  TATCCCAGAAGATTGAGCAAGATGGGA-CCTAAGTTCCCGTTGCACCGAA  49

seq1  GACTAGC-CGTTTCCAGGCCTCTCCTCATTAGCACCTAGAACACTGATGC  96
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGCACGTTTCCAGGCCTCTCCTCATTAGCACCTAGAACACTGATGC  99

seq1  TCTCTCCGGCCCTGCTCAAGGCCCAGAAGACGGTGGGCCCTTGCTAGGGG  146
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTCTCCGGCCCTGCTCAAAGCCCAGAAGACGGTGGGCCCTTGCTAGGGG  149

seq1  CCACCCAAGCCGCCAAACGCCAGGGCCAGGGTCTGGGCCTCTAGGGCCGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAAGCCGCCAAACGCCAGGGCCAGGGTCTGGGCCTCTAGGGCCGC  199

seq1  TTCCCAATGGCCAGTCTCTCCGACAGGAGCACGCTGCCCGACCAAAGATC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAATGGCCAGTCTCTCCGACAGGAGCACGCTGCCCGACCAAAGATC  249

seq1  ACAGCCCGCGCTGCCGCTCTGGGCGCCTACCGCGGGGCACGCCGGGACTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCGCGCTGCCGCTCTGGGCGCCTACCGCGGGGCACGCCGGGACTT  299

seq1  GTAGTCCGCGGCCGTTTCCCACTCCTGGCTCTCGGCGGCGTGTGGACTCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCCGCGGCCGTTTCCCACTCCTGGCTCTCGGCGGCGTGTGGACTCC  349

seq1  AATCCCCGGGCACCTGCGCGGCCAGGCCAGCGATTCTAGGGGTCCCGGGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCGGGCACCTGCGCGGCCAGGCCAGCGATTCTAGGGGTCCCGGGG  399

seq1  CGCCCCGAAGCCGCCACCTAAACAAGACGCAGGTCGGTACTGACAACAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCGAAGCCGCCACCTAAACAAGACGCAGGTCGGTACTGACAACAAA  449

seq1  CCCAGGACGGGAGCCGAGTCGCCACGGAGGACTGAACCCTTGGGACTCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACGGGAGCCGAGTCGCCACGGAGGACTGAACCCTTGGGACTCAC  499

seq1  CGACTTTGTAGGGCAGTTTATCAGACATGCTGGCGGCGCTTCCGCTAGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTTGTAGGGCAGTTTATCAGACATGCTGGCGGCGCTTCCGCTAGGA  549

seq1  CTGATGAACTCAGTGAAGGGGGCCGGGCGGCGCGGGGCAGGGATCTACGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAACTCAGTGAAGGGGGCCGGGCGGCGCGGGGCAGGGATCTACGC  599

seq1  CTGGCGCCGGCGTCTTTAAATATCTTCTTATTTGAATATTCATGAACCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGCCGGCGTCTTTAAATATCTTCTTATTTGAATATTCATGAACCTG  649

seq1  CTGGGGGCTGAAACTTAGGGGCGGAGCCTAGCTCGAGGCGTTGAGCGGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGCTGAAACTTAGGGGCGGAGCCTAGCTCGAGGCGTTGAGCGGAG  699

seq1  CGGGAGCAAGGCTGATCTCTGCCTCAAAAATCATAAATTTTGTGCACTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGCAAGGCTGATCTCTGCCTCAAAAATCATAAATTTTGTGCACTGT  749

seq1  GGCCTTTGGACCCCTGGCACTCGACTAGGAGGGAGCGTGGAGAGAGGCGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTGGACCCCTGGCACTCGACTAGGAGGGAGCGTGGAGAGAGGCGG  799

seq1  TTCTTCTCCCATCCGTCCAGCCAGTGAATCAGAGGTCAAAACAAGGCAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCCCATCCGTCCAGCCAGTGAATCAGAGGTCAAAACAAGGCAGA  849

seq1  ATTC  850
      ||||
seq2  ATTC  853