BAC Information

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BAC

Clone NameB6Ng01-238O04
Chromosome2 (Build37)
Map Location 61,175,781 - 61,324,759
singlet/doubletdoublet
Overlap genenone
Upstream geneLy75, LOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
Downstream geneTank, Psmd14, Tbr1, LOC100039274, Slc4a10, Dpp4, Gcg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238O04.bB6Ng01-238O04.g
ACCGA049461GA049462
length1,1401,008
definitionB6Ng01-238O04.b B6Ng01-238O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,175,781 - 61,176,938)(61,323,751 - 61,324,759)
sequence
gaattcttgctggtgagatactagctcgggcaagaagtatcccagtatat
cagctaggatttctcagtctcgatctctcttgcctttctgtggtatgagg
cagcaccctttctagaatgaagctatatgctctcctaggagacaaaaata
tcagagaatcccttcattgcagattcttacccaggaaggcagaggaaagg
aagcctagtgtttccagtcttgatggatggtttttgaggacaagatttta
atttctctgatccaccttgagtaagaagaattttacttgacagaagtaga
tagaagggcacataagggaaggtagggtgagagtagcttagaagaatact
tggctttagagatcttcaagtgtcctttagttcaaagttctcagatatca
acatgccatattttagggtgctattttctgaagcacagcagcacgtggtg
ttaggccttcctgtgagtattttgggtcaccatataattgccttagggaa
accaactttgcatcttaaaatgggctgaagaaatctaatcagaggcattc
ttctgagttaaggtttaaccatcgacaaacagcaatgcttcaagatgtct
ctgagtgtttcacaggctcacattcattcatccttgtcagctttttctga
atatctagagttcataagactgtgcaatagaaccatgcactatggagcaa
aggttatttgtaatcctgttagcccaaaacagtgactcacagatgtccat
ctatcagaaaaggtagaaaactaaaatattttttctccaaattagtccac
agcaactgtcctgtgtatcatcataattaatgtgttatcatatcattaat
ttgtgccctcgtgaatttcatcttaatttgtaggctagtttacatgtcga
ggggttggaagagacctagaagagaacaggatgaaggagtcagcagaaga
aaacatcacataggcgagatagaattcagcccaccatttttctttttaaa
ggtcattaaaacctcttgtgagaagttggaattagttaattcttcagcag
tttaagttaaaccttaaggctacttcattaatagtatctgaagtaggaat
gaaattctagcaaagttttaagccttccaggtagtcagct
gaattcagatgtgctggcctgacacagagaaccgttttattataggcatc
aacaccatatcagcagtccatggcacagactgagaaacacagcactctgt
atcccttgaggaggggatggaaccctgaacttttttttgttatgatttat
tcagatattttcagttaaaaagcaggaaggtgttctaatccaggaacatc
acttctctggcctttacagagaagttttgtttttgttttgtccttaggct
ctctaccattttcctcaaaatagagaagtggggaggcccaggctctgccg
gcttctctctctgctccccagtaccttctttctttcttcttcacggattt
cacccctttgtttcctggaagggtaattcttttaccagcctgcctgatga
tgcccccatcacacggaagccagctgccactgtcttccctcttcatgggt
ctgtctctgtaaacttttgtgtatggtgtgtggcatgtgtattagccttc
atcagtgcaagcttgcatgtgagggtcagatggcaacctcgggttctagc
cttcaccttccatcttgtttaagatatggccactgggtgtgccaggctgg
cccacaagctgccttctctgcctaagattcaccgtattttgtctccccct
tattccttttcttaagtctgctgcctaactgcagagtctcctccctttta
gaccaaaggcctcatctggccacttagctcagctgattagagcatgatgc
taacaagacaaagaacttcttgagcatcatcaccttcctctcccccagac
taggctgtaaagctccactgccctctgcttgcttcacagtactgaccact
ctctgttgacggactctctccactcaattgtttaccgcttgagagtgagg
accaagttgcagttctctctagttttcaccagctagcatgcagcacagag
aagtcacttagtaatgcttagctggaaaggagccatttgtactgagaaag
agagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_61175781_61176938
seq2: B6Ng01-238O04.b_42_1181

seq1  GAATTCTTGCTGGTGAGATACTAGCTCGGGCAAGAAGTATCCCAGTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTGGTGAGATACTAGCTCGGGCAAGAAGTATCCCAGTATAT  50

seq1  CAGCTAGGATTTCTCAGTCTCGATCTCTCTTGCCTTTCTGTGGTATGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGGATTTCTCAGTCTCGATCTCTCTTGCCTTTCTGTGGTATGAGG  100

seq1  CAGCACCCTTTCTAGAATGAAGCTATATGCTCTCCTAGGAGACAAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCCTTTCTAGAATGAAGCTATATGCTCTCCTAGGAGACAAAAATA  150

seq1  TCAGAGAATCCCTTCATTGCAGATTCTTACCCAGGAAGGCAGAGGAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAATCCCTTCATTGCAGATTCTTACCCAGGAAGGCAGAGGAAAGG  200

seq1  AAGCCTAGTGTTTCCAGTCTTGATGGATGGTTTTTGAGGACAAGATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAGTGTTTCCAGTCTTGATGGATGGTTTTTGAGGACAAGATTTTA  250

seq1  ATTTCTCTGATCCACCTTGAGTAAGAAGAATTTTACTTGACAGAAGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTGATCCACCTTGAGTAAGAAGAATTTTACTTGACAGAAGTAGA  300

seq1  TAGAAGGGCACATAAGGGAAGGTAGGGTGAGAGTAGCTTAGAAGAATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGGCACATAAGGGAAGGTAGGGTGAGAGTAGCTTAGAAGAATACT  350

seq1  TGGCTTTAGAGATCTTCAAGTGTCCTTTAGTTCAAAGTTCTCAGATATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTAGAGATCTTCAAGTGTCCTTTAGTTCAAAGTTCTCAGATATCA  400

seq1  ACATGCCATATTTTAGGGTGCTATTTTCTGAAGCACAGCAGCACGTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCATATTTTAGGGTGCTATTTTCTGAAGCACAGCAGCACGTGGTG  450

seq1  TTAGGCCTTCCTGTGAGTATTTTGGGTCACCATATAATTGCCTTAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCCTTCCTGTGAGTATTTTGGGTCACCATATAATTGCCTTAGGGAA  500

seq1  ACCAACTTTGCATCTTAAAATGGGCTGAAGAAATCTAATCAGAGGCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTTTGCATCTTAAAATGGGCTGAAGAAATCTAATCAGAGGCATTC  550

seq1  TTCTGAGTTAAGGTTTAACCATCGACAAACAGCAATGCTTCAAGATGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTAAGGTTTAACCATCGACAAACAGCAATGCTTCAAGATGTCT  600

seq1  CTGAGTGTTTCACAGGCTCACATTCATTCATCCTTGTCAGCTTTTTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTTTCACAGGCTCACATTCATTCATCCTTGTCAGCTTTTTCTGA  650

seq1  ATATCTAGAGTTCATAAGACTGTGCAATAGAACCATGCACTATGGAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAGAGTTCATAAGACTGTGCAATAGAACCATGCACTATGGAGCAA  700

seq1  AGGTTATTTGTAATCCTGTTAGCCCAAAACAGTGACTCACAGATGTCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATTTGTAATCCTGTTAGCCCAAAACAGTGACTCACAGATGTCCAT  750

seq1  CTATCAGGAAAAGGTAGAAAACTAAAATATTTTTTCTCCAAATTAGTCCA  800
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCA-GAAAAGGTAGAAAACTAAAATATTTTTTCTCCAAATTAGTCCA  799

seq1  CAGCAACTGTCCTGTGTATCATCATAATTAATGTGTTATCATATCATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACTGTCCTGTGTATCATCATAATTAATGTGTTATCATATCATTAA  849

seq1  TTTGTGCCCTCGTGAATTTCATCTTAATTTGTAGGCTAGTTTACATGTCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCCCTCGTGAATTTCATCTTAATTTGTAGGCTAGTTTACATGTCG  899

seq1  AGGGGTTGGAAGAGACCTAGAAGAGAACAGGATGAAGGAGTCAGCAGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGGAAGAGACCTAGAAGAGAACAGGATGAAGGAGTCAGCAGAAG  949

seq1  AAAACATCAACATAGGCGAGAATAGAATTCAGGCCCACCATTTTTCCTTT  1000
      |||||||| ||||||||||| |||||||||| ||||||||||||| ||||
seq2  AAAACATC-ACATAGGCGAG-ATAGAATTCA-GCCCACCATTTTT-CTTT  995

seq1  TTAAAGGGTCATTAAAACCTCTTGTGAG-AGTTGGAAATTAGTTAATTCT  1049
      ||||| |||||||||||||||||||||| |||||| ||||||||||||||
seq2  TTAAA-GGTCATTAAAACCTCTTGTGAGAAGTTGG-AATTAGTTAATTCT  1043

seq1  TCCAGCAGTTAAAGGTTTAAAACCCTAAAGCTACTTCATTTAATAAGTTT  1099
      | |||||||| |||   | ||||| ||| ||||||||| ||||||    |
seq2  T-CAGCAGTTTAAG---TTAAACCTTAAGGCTACTTCA-TTAATA---GT  1085

seq1  ATCTGAAGTAGGGGATGAAATCTAAGGCCAAAGTTTTAAAACCTCCCAGG  1149
      |||||||||| || |||||||   ||  ||||||||| || ||| |||||
seq2  ATCTGAAGTA-GGAATGAAATTCTAG--CAAAGTTTT-AAGCCTTCCAGG  1131

seq1  TAGTCAGCT  1158
      |||||||||
seq2  TAGTCAGCT  1140

seq1: chr2_61323751_61324759
seq2: B6Ng01-238O04.g_70_1076 (reverse)

seq1  TCTCTCTCTTTCTCAGTACAAATGGCTCTTTTCCAGCTAAGCATTTACTA  50
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  TCTCTCTCTTTCTCAGTACAAATGGCTCCTTTCCAGCTAAGCA-TTACTA  49

seq1  AGTGACTTCTCTGTGCCTGCATGCTAGCTGGTGAAAACTAGAGAGAACTG  100
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGTGACTTCTCTGTG-CTGCATGCTAGCTGGTGAAAACTAGAGAGAACTG  98

seq1  CAACTTGGTCCTCACTCTCAAGCGGTAAACAATTGAGTGGAGAGAGTCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGGTCCTCACTCTCAAGCGGTAAACAATTGAGTGGAGAGAGTCCG  148

seq1  TCAACAGAGAGTGGTCAGTACTGTGAAGCAAGCAGAGGGCAGTGGAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGAGAGTGGTCAGTACTGTGAAGCAAGCAGAGGGCAGTGGAGCTT  198

seq1  TACAGCCTAGTCTGGGGGAGAGGAAGGTGATGATGCTCAAGAAGTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCTAGTCTGGGGGAGAGGAAGGTGATGATGCTCAAGAAGTTCTTT  248

seq1  GTCTTGTTAGCATCATGCTCTAATCAGCTGAGCTAAGTGGCCAGATGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTTAGCATCATGCTCTAATCAGCTGAGCTAAGTGGCCAGATGAGG  298

seq1  CCTTTGGTCTAAAAGGGAGGAGACTCTGCAGTTAGGCAGCAGACTTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGTCTAAAAGGGAGGAGACTCTGCAGTTAGGCAGCAGACTTAAGA  348

seq1  AAAGGAATAAGGGGGAGACAAAATACGGTGAATCTTAGGCAGAGAAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATAAGGGGGAGACAAAATACGGTGAATCTTAGGCAGAGAAGGCA  398

seq1  GCTTGTGGGCCAGCCTGGCACACCCAGTGGCCATATCTTAAACAAGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGGGCCAGCCTGGCACACCCAGTGGCCATATCTTAAACAAGATGG  448

seq1  AAGGTGAAGGCTAGAACCCGAGGTTGCCATCTGACCCTCACATGCAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAAGGCTAGAACCCGAGGTTGCCATCTGACCCTCACATGCAAGCT  498

seq1  TGCACTGATGAAGGCTAATACACATGCCACACACCATACACAAAAGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGATGAAGGCTAATACACATGCCACACACCATACACAAAAGTTTA  548

seq1  CAGAGACAGACCCATGAAGAGGGAAGACAGTGGCAGCTGGCTTCCGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGACCCATGAAGAGGGAAGACAGTGGCAGCTGGCTTCCGTGTG  598

seq1  ATGGGGGCATCATCAGGCAGGCTGGTAAAAGAATTACCCTTCCAGGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGCATCATCAGGCAGGCTGGTAAAAGAATTACCCTTCCAGGAAAC  648

seq1  AAAGGGGTGAAATCCGTGAAGAAGAAAGAAAGAAGGTACTGGGGAGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGTGAAATCCGTGAAGAAGAAAGAAAGAAGGTACTGGGGAGCAGA  698

seq1  GAGAGAAGCCGGCAGAGCCTGGGCCTCCCCACTTCTCTATTTTGAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGCCGGCAGAGCCTGGGCCTCCCCACTTCTCTATTTTGAGGAAA  748

seq1  ATGGTAGAGAGCCTAAGGACAAAACAAAAACAAAACTTCTCTGTAAAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGAGAGCCTAAGGACAAAACAAAAACAAAACTTCTCTGTAAAGGC  798

seq1  CAGAGAAGTGATGTTCCTGGATTAGAACACCTTCCTGCTTTTTAACTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGTGATGTTCCTGGATTAGAACACCTTCCTGCTTTTTAACTGAA  848

seq1  AATATCTGAATAAATCATAACAAAAAAAAGTTCAGGGTTCCATCCCCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTGAATAAATCATAACAAAAAAAAGTTCAGGGTTCCATCCCCTCC  898

seq1  TCAAGGGATACAGAGTGCTGTGTTTCTCAGTCTGTGCCATGGACTGCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGATACAGAGTGCTGTGTTTCTCAGTCTGTGCCATGGACTGCTGA  948

seq1  TATGGTGTTGATGCCTATAATAAAACGGTTCTCTGTGTCAGGCCAGCACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGTTGATGCCTATAATAAAACGGTTCTCTGTGTCAGGCCAGCACA  998

seq1  TCTGAATTC  1009
      |||||||||
seq2  TCTGAATTC  1007