BAC Information

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BAC

Clone NameB6Ng01-239H01
Chromosome14 (Build37)2 (Build37)
Map Location 117,928,016 - 117,928,0678,232,310 - 8,233,379
singlet/doubletsingletsinglet
Overlap geneGpc6
Upstream genenone
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239H01.bB6Ng01-239H01.g
ACCGA049864GA049865
length4341,077
definitionB6Ng01-239H01.b B6Ng01-239H01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(117,928,016 - 117,928,067)(8,232,310 - 8,233,379)
sequence
tttaagggatttttgtgtttcctcttcaagggcttctagctatttacttg
tgttctcctgtatttctttaagggagttatttatgtccttcttaaagttc
tctatcatcatcatgagaagtgatttttagattctaatcttgcttttcca
gggtgatggtgtatccaggacttgttatggtgggagaattgggttctgat
gatgccaagtaacctttgattctgatgcctatgttcttttctttctttct
ttcttccttccttccttccttccttccttccatccttccttccttccttc
cttctttctttctttctttctttctttctttctttctcccttccttcctt
ccttccttccttacatccttccttccttccttcctttctctctttcttaa
actttttaatagattttttctttatttttatttt

gaattctttcttgttcttttattagtctgcttgaagctagtatgtacttt
gtcagtttctcactatccttctcacacagtgtattctccttccccaactc
tcaccgaccaactccacacccctctttctcctctctctccctcccccctt
ccccttcctttttctgtctccctccccctcctgccctccctttcctctcc
cctctctctctctccatacagcaagtagacaaaaactcagagttttaaaa
agacatgaaatccacacacatagacatgtgcacacacacacacacccctt
taaaaaatcagaaattttaataaccaggtaaaagttctgtaagataaaag
aaaaaagtaagttattacttgaacaaagtaatgtaagccaaaagtactac
aaaattaccatggtgtttatttgtgttggccatcagctgctgcacatggg
ggataccctcaagtttgtttaatatatacagcaaattgaaaaaaattttc
ttggatagaggtggaagtcagtgtccacagggaagctatcttgcttaaac
ctgtgcagactgactactggcttccacagatgtgtccggaaaacactgtt
tcattggtgttgatctcctctatcttgacaatctttccatgttgttctct
atatagttccttaagcccaaaaatggatgattacatcacattttggaata
agtattccccccctctcaatctgtacatttttcagttgtggctctttatg
ttagtatcttctctgataatggctaactgtgtcactgaaattttgggtag
agtagaatattattagaaatcattttcctattttgtttagaaacattttt
ttatttgcctagacaaatggtctatttagtttcaggttctgagcaactca
agcagtgtcagcatgaattgcatctcatagtgtgggctgcatttgagaga
gtatgtcactattgcacacatgtacccatgtagtctggtctcctttatag
atcataggaattgtatgtatggtggtgtttaacaattcctccctctgatt
gcaatacagaatatcacccccatattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117928016_117928067
seq2: B6Ng01-239H01.b_420_483

seq1  CCTTCCTTCCTTCCTTTCTTTCTTTC-----CATTT-------CTTTTTC  38
      ||||||||||||||||||| ||||||     | |||        ||||||
seq2  CCTTCCTTCCTTCCTTTCTCTCTTTCTTAAACTTTTTAATAGATTTTTTC  50

seq1  TTTATTTTTATTTT  52
      ||||||||||||||
seq2  TTTATTTTTATTTT  64


seq1: chr2_8232310_8233379
seq2: B6Ng01-239H01.g_65_1141

seq1  GAATTCTTTCTTGTTCTTTTATTAGTCTGCTTGAAGCTAGTATGTACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTGTTCTTTTATTAGTCTGCTTGAAGCTAGTATGTACTTT  50

seq1  GTCAGTTTCTCACTATCCTTCTCACACAGTGTATTCTCCTTCCCCAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTTCTCACTATCCTTCTCACACAGTGTATTCTCCTTCCCCAACTC  100

seq1  TCACCGACCAACTCCACACCCCTCTTTCTCCTCTCTCTCCCTCCCCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGACCAACTCCACACCCCTCTTTCTCCTCTCTCTCCCTCCCCCCTT  150

seq1  CCCCTTCCTTTTTCTGTCTCCCTCCCCCTCCTGCCCTCCCTTTCCTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCTTTTTCTGTCTCCCTCCCCCTCCTGCCCTCCCTTTCCTCTCC  200

seq1  CCTCTCTCTCTCTCCATACAGCAAGTAGACAAAAACTCAGAGTTTTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCTCTCTCCATACAGCAAGTAGACAAAAACTCAGAGTTTTAAAA  250

seq1  AGACATGAAATCCACACACATAGACATGTGCACACACACACACACCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGAAATCCACACACATAGACATGTGCACACACACACACACCCCTT  300

seq1  TAAAAAATCAGAAATTTTAATAACCAGGTAAAAGTTCTGTAAGATAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATCAGAAATTTTAATAACCAGGTAAAAGTTCTGTAAGATAAAAG  350

seq1  AAAAAAGTAAGTTATTACTTGAACAAAGTAATGTAAGCCAAAAGTACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTAAGTTATTACTTGAACAAAGTAATGTAAGCCAAAAGTACTAC  400

seq1  AAAATTACCATGGTGTTTATTTGTGTTGGCCATCAGCTGCTGCACATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACCATGGTGTTTATTTGTGTTGGCCATCAGCTGCTGCACATGGG  450

seq1  GGATACCCTCAAGTTTGTTTAATATATACAGCAAATTGAAAAAAATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACCCTCAAGTTTGTTTAATATATACAGCAAATTGAAAAAAATTTTC  500

seq1  TTGGATAGAGGTGGAAGTCAGTGTCCACAGGGAAGCTATCTTGCTTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAGAGGTGGAAGTCAGTGTCCACAGGGAAGCTATCTTGCTTAAAC  550

seq1  CTGTGCAGACTGACTACTGGCTTCCACAGATGTGTCCGGAAAACACTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGACTGACTACTGGCTTCCACAGATGTGTCCGGAAAACACTGTT  600

seq1  TCATTGGTGTTGATCTCCTCTATCTTGACAATCTTTCCATGTTGTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGTGTTGATCTCCTCTATCTTGACAATCTTTCCATGTTGTTCTCT  650

seq1  ATATAGTTCCTTAAGCCCAAAAATGGATGATTACATCACATTTTGGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTCCTTAAGCCCAAAAATGGATGATTACATCACATTTTGGAATA  700

seq1  AGTATTCCCCCCCTCTCAATCTGTACATTTTTCAGTTGTGGCTCTTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCCCCCCCTCTCAATCTGTACATTTTTCAGTTGTGGCTCTTTATG  750

seq1  TTAGTATCTTCTCTGATAATGGCTAACTGTGTCACTGAAATTTT-GGTAG  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTAGTATCTTCTCTGATAATGGCTAACTGTGTCACTGAAATTTTGGGTAG  800

seq1  AGTAGAATATTATTAGAAATCATTTTCCTATTTTGTTTAGAAACA-TTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGTAGAATATTATTAGAAATCATTTTCCTATTTTGTTTAGAAACATTTTT  850

seq1  TTATTTGCCTAGACAAATGGTCTATTTAGTTTCAGGTTCTGAGCAACTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGCCTAGACAAATGGTCTATTTAGTTTCAGGTTCTGAGCAACTCA  900

seq1  AGCAGTGTCAGCATGAATTGCATCTCATAGTGTGGGCTGCATTTGAGAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTCAGCATGAATTGCATCTCATAGTGTGGGCTGCATTTGAGAGA  950

seq1  GTTATGTCACTATTGCACACATGTA-CCATGTAGTCTGGTCTCCTTTATA  997
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  G-TATGTCACTATTGCACACATGTACCCATGTAGTCTGGTCTCCTTTATA  999

seq1  GATCATAGGATTTGTATGTATGTTGGTGTTT-ACCATTC--TCCTCTGAT  1044
      |||||||||| ||||||||||| |||||||| || ||||   ||||||||
seq2  GATCATAGGAATTGTATGTATGGTGGTGTTTAACAATTCCTCCCTCTGAT  1049

seq1  TG-TATACAGAATATCA-CCCCATATTG  1070
      ||  ||||||||||||| ||||||||||
seq2  TGCAATACAGAATATCACCCCCATATTG  1077


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