BAC Information

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BAC

Clone NameB6Ng01-240D07
Chromosome2 (Build37)
Map Location 44,930,777 - 45,107,861
singlet/doubletdoublet
Overlap geneZeb2
Upstream geneArhgap15, Gtdc1
Downstream geneLOC100042661, LOC100041337, LOC666604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240D07.bB6Ng01-240D07.g
ACCGA050434GA050435
length9331,041
definitionB6Ng01-240D07.b B6Ng01-240D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,106,929 - 45,107,861)(44,930,777 - 44,931,824)
sequence
gaattccttactaactccatttttctctgtttccagagagtgaaataaga
tttgtatttcaacaaggcctgagtttaaattaaaaaataaaaaaataaaa
atcaagatacccatggaactaaaaatctcaaagtctccctttctaaccat
aatcaattcttttttgcacagttgcttgctttgctgctttcttccttcct
ttctttccttttcatgacatgccatatactcactatatgcctctgaagtg
cctggaactcactgtgtagactagactggccaatccttgttctagattga
aaaacttcagaattataatcataatcatttcattcagcaaagtcaaagaa
aaggtatacttcaaaacaacaacaacaacagatctttaacataatgtccg
tggaaatattataaaactgtattgcaaatatcttatcttttaaaggtgag
caagctggccaatttaccagggaagtgtgctaaatatatatagccctgat
agcttgaaactatttagcacctccaggggacaaagattagaacactgtgt
ttttactttttatttctttatttatttttgctgtgatttgctttggtgat
gagacagggtcactctttagcccagaatgagctggcacgagtgactcctt
gcctctgaatcctgcatggggtcacttcaggtacatgtcaccacccttgg
tttaagattacaacttcttctctattcgtgtctgatattatagacttttc
tattttaaatcttctcctttcctataaactgtgactatctaagtagttta
tatttccttctaggttgctgtatcttatatagtattagtcaaggaaaccc
agatgctagaactaaaagactaaagtcttaatgaatgagggtctgtgggg
gttggttttgctttgtttgtggggtggttatag
gaattctgagacagcacctcatctctccttgaacactcacttcccatggt
cttggtttgctttctctcttcctggcctcttttggacagtatcctctcct
tcctcacctcacagggtttccacactggggctcagactgtctttcctttc
ctttagtgttttctttttttttttttttttgagttgggatccccatctac
acaacctgtgctgcttgaccctcacttttcacctcccctcccacagtccc
tttcatcaggctgctttccactggtgccccctttctctgcagtattgttt
cctttctaccggtgacagccaaaattctctcattagcatctattatttct
ctcgtttaccatggtcatttctttcctcccaaaccaacgtgttgaccaag
tctttacaaagttttatgttcaaaacactttctcctctgaacttcagaat
ctccaggcacaccttctcctacatatccctgctccctgagttttggtcag
attctctgcttggaggttttagctccatatttcctgggtttggcttcctt
gctacaatttccattcgtttcctgcctttatcctaaagtgcttactggaa
agtctccattatctttcacatctcctagcatatcttgtgtatagtctctt
ttttttctcttctgagatggggtctcactatgtagcgctgactcgagctc
acaatgtaggctgttcttgaactcacaaagatctgaattaaagggcctgt
accatctggtttaatatcagaggttttcaatctgtggctcactacctttt
gggggttgaaaaaactctttcttcaggggccgaattatcggatatttaca
ttatgattttataacagcagtaaaattaagatatgatgtagcaacaaaaa
taactgtatggttggtgtcatcacaacatgaagggtctgtattaaaggtt
gcagtattaaggaagtgaaaacactggctatatagtatcttcttcactct
actctatttacgaatatatttcactatatctgcagtaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45106929_45107861
seq2: B6Ng01-240D07.b_43_975 (reverse)

seq1  CTAT-ACCACCCCACAAAACAAAGCAAAACCAACCCCCACAGACCCTCAT  49
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTATAACCACCCCAC-AAACAAAGCAAAACCAACCCCCACAGACCCTCAT  49

seq1  TCATTAAGACTTTAGTCTTTTAGTTCTAGCATCTGGGTTTCCTTGACTAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAGACTTTAGTCTTTTAGTTCTAGCATCTGGGTTTCCTTGACTAA  99

seq1  TACTATATAAGATACAGCAACCTAGAAGGAAATATAAACTACTTAGATAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATAAGATACAGCAACCTAGAAGGAAATATAAACTACTTAGATAG  149

seq1  TCACAGTTTATAGGAAAGGAGAAGATTTAAAATAGAAAAGTCTATAATAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTTATAGGAAAGGAGAAGATTTAAAATAGAAAAGTCTATAATAT  199

seq1  CAGACACGAATAGAGAAGAAGTTGTAATCTTAAACCAAGGGTGGTGACAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACGAATAGAGAAGAAGTTGTAATCTTAAACCAAGGGTGGTGACAT  249

seq1  GTACCTGAAGTGACCCCATGCAGGATTCAGAGGCAAGGAGTCACTCGTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGAAGTGACCCCATGCAGGATTCAGAGGCAAGGAGTCACTCGTGC  299

seq1  CAGCTCATTCTGGGCTAAAGAGTGACCCTGTCTCATCACCAAAGCAAATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATTCTGGGCTAAAGAGTGACCCTGTCTCATCACCAAAGCAAATC  349

seq1  ACAGCAAAAATAAATAAAGAAATAAAAAGTAAAAACACAGTGTTCTAATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAAAATAAATAAAGAAATAAAAAGTAAAAACACAGTGTTCTAATC  399

seq1  TTTGTCCCCTGGAGGTGCTAAATAGTTTCAAGCTATCAGGGCTATATATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCCCTGGAGGTGCTAAATAGTTTCAAGCTATCAGGGCTATATATA  449

seq1  TTTAGCACACTTCCCTGGTAAATTGGCCAGCTTGCTCACCTTTAAAAGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCACACTTCCCTGGTAAATTGGCCAGCTTGCTCACCTTTAAAAGAT  499

seq1  AAGATATTTGCAATACAGTTTTATAATATTTCCACGGACATTATGTTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTTGCAATACAGTTTTATAATATTTCCACGGACATTATGTTAAA  549

seq1  GATCTGTTGTTGTTGTTGTTTTGAAGTATACCTTTTCTTTGACTTTGCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTTGTTGTTGTTGTTTTGAAGTATACCTTTTCTTTGACTTTGCTG  599

seq1  AATGAAATGATTATGATTATAATTCTGAAGTTTTTCAATCTAGAACAAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATGATTATGATTATAATTCTGAAGTTTTTCAATCTAGAACAAGG  649

seq1  ATTGGCCAGTCTAGTCTACACAGTGAGTTCCAGGCACTTCAGAGGCATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCAGTCTAGTCTACACAGTGAGTTCCAGGCACTTCAGAGGCATAT  699

seq1  AGTGAGTATATGGCATGTCATGAAAAGGAAAGAAAGGAAGGAAGAAAGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTATATGGCATGTCATGAAAAGGAAAGAAAGGAAGGAAGAAAGCA  749

seq1  GCAAAGCAAGCAACTGTGCAAAAAAGAATTGATTATGGTTAGAAAGGGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCAAGCAACTGTGCAAAAAAGAATTGATTATGGTTAGAAAGGGAG  799

seq1  ACTTTGAGATTTTTAGTTCCATGGGTATCTTGATTTTTATTTTTTTATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGATTTTTAGTTCCATGGGTATCTTGATTTTTATTTTTTTATTT  849

seq1  TTTAATTTAAACTCAGGCCTTGTTGAAATACAAATCTTATTTCACTCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTAAACTCAGGCCTTGTTGAAATACAAATCTTATTTCACTCTCT  899

seq1  GGAAACAGAGAAAAATGGAGTTAGTAAGGAATTC  933
      ||||||||||||||||||||||||||||||||||
seq2  GGAAACAGAGAAAAATGGAGTTAGTAAGGAATTC  933

seq1: chr2_44930777_44931824
seq2: B6Ng01-240D07.g_65_1105

seq1  GAATTCTGAGACAGCACCTCATCTCTCCTTGAACACTCACTTCCCATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGACAGCACCTCATCTCTCCTTGAACACTCACTTCCCATGGT  50

seq1  CTTGGTTTGCTTTCTCTCTTCCTGGCCTCTTTTGGACAGTATCCTCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTGCTTTCTCTCTTCCTGGCCTCTTTTGGACAGTATCCTCTCCT  100

seq1  TCCTCACCTCACAGGGTTTCCACACTGGGGCTCAGACTGTCTTTCCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCTCACAGGGTTTCCACACTGGGGCTCAGACTGTCTTTCCTTTC  150

seq1  CTTTAGTGTTTTCTTTTTTTTTTTTTTTTTGAGTTGGGATCCCCATCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTGTTTTCTTTTTTTTTTTTTTTTTGAGTTGGGATCCCCATCTAC  200

seq1  ACAACCTGTGCTGCTTGACCCTCACTTTTCACCTCCCCTCCCACAGTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTGTGCTGCTTGACCCTCACTTTTCACCTCCCCTCCCACAGTCCC  250

seq1  TTTCATCAGGCTGCTTTCCACTGGTGCCCCCTTTCTCTGCAGTATTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCAGGCTGCTTTCCACTGGTGCCCCCTTTCTCTGCAGTATTGTTT  300

seq1  CCTTTCTACCGGTGACAGCCAAAATTCTCTCATTAGCATCTATTATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTACCGGTGACAGCCAAAATTCTCTCATTAGCATCTATTATTTCT  350

seq1  CTCGTTTACCATGGTCATTTCTTTCCTCCCAAACCAACGTGTTGACCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTTACCATGGTCATTTCTTTCCTCCCAAACCAACGTGTTGACCAAG  400

seq1  TCTTTACAAAGTTTTATGTTCAAAACACTTTCTCCTCTGAACTTCAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACAAAGTTTTATGTTCAAAACACTTTCTCCTCTGAACTTCAGAAT  450

seq1  CTCCAGGCACACCTTCTCCTACATATCCCTGCTCCCTGAGTTTTGGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCACACCTTCTCCTACATATCCCTGCTCCCTGAGTTTTGGTCAG  500

seq1  ATTCTCTGCTTGGAGGTTTTAGCTCCATATTTCCTGGGTTTGGCTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGCTTGGAGGTTTTAGCTCCATATTTCCTGGGTTTGGCTTCCTT  550

seq1  GCTACAATTTCCATTCGTTTCCTGCCTTTATCCTAAAGTGCTTACTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAATTTCCATTCGTTTCCTGCCTTTATCCTAAAGTGCTTACTGGAA  600

seq1  AGTCTCCATTATCTTTCACATCTCCTAGCATATCTTGTGTATAGTCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCATTATCTTTCACATCTCCTAGCATATCTTGTGTATAGTCTCTT  650

seq1  TTTTTTCTCTTCTGAGATGGGGTCTCACTATGTAGCGCTGACTCGAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCTTCTGAGATGGGGTCTCACTATGTAGCGCTGACTCGAGCTC  700

seq1  ACAATGTAGGCTGTTCTTGAACTCACAAAGATCTGAATTAAAGGGCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTAGGCTGTTCTTGAACTCACAAAGATCTGAATTAAAGGGCCTGT  750

seq1  ACCATCTGGTTTAATATCAGAGGTTTTCAATCTGTGGCTCACTACCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGGTTTAATATCAGAGGTTTTCAATCTGTGGCTCACTACCTTTT  800

seq1  GGGGGTTG-AAAAACTCTTTC-TCAGGGGCCGAA-TATCGGATATTTACA  847
      |||||||| |||||||||||| |||||||||||| |||||||||||||||
seq2  GGGGGTTGAAAAAACTCTTTCTTCAGGGGCCGAATTATCGGATATTTACA  850

seq1  TTATGATTTTATAACAGCAGTAAAATTAAAGATATGATGTAGCAACAAAA  897
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTATGATTTTATAACAGCAGTAAAATT-AAGATATGATGTAGCAACAAAA  899

seq1  ATAACTGTATGGTTGGTGTCATCACAACATG-AGGGTCTGTATTAAAGGG  946
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  ATAACTGTATGGTTGGTGTCATCACAACATGAAGGGTCTGTATTAAA-GG  948

seq1  TTGCAGTATT-AGGAAGGTTGAGAACCACT-GCTATATAGTATCTTCTTT  994
      |||||||||| ||||||  ||| || |||| |||||||||||||||||| 
seq2  TTGCAGTATTAAGGAAG--TGA-AAACACTGGCTATATAGTATCTTCTT-  994

seq1  CAACCTTCTACCTCTTATTTTACAGATATATTTCACTATATCTGCAGTAT  1044
         |  |||| ||||   |||||  |||||||||||||||||||||||| 
seq2  ---CACTCTA-CTCT--ATTTACGAATATATTTCACTATATCTGCAGTA-  1037

seq1  ATGC  1048
      ||||
seq2  ATGC  1041