BAC Information

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BAC

Clone NameB6Ng01-240L10
Chromosome2 (Build37)
Map Location 31,544,007 - 31,685,020
singlet/doubletdoublet
Overlap geneAbl1, BC094274, Fibcd1
Upstream geneEG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2
Downstream geneLamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240L10.bB6Ng01-240L10.g
ACCGA050810GA050811
length1431,045
definitionB6Ng01-240L10.b B6Ng01-240L10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,684,878 - 31,685,020)(31,544,007 - 31,545,037)
sequence
gaattctctatatcacagggtttccataaggagagggtgatcctgacagg
caaggtggaggggtacggtgatcacggaatgaaactctgaaacatgaatt
ccatggatccagagtccttgcttatggaaatgggggggggggg
gaattccggcgtcgctgggggcgggatcgggggcggggcctggcctcgtt
gtggcgcggctcgtaatccattatggcggcctcgggggtcggtgtctctc
cctgagaggcgtcggagctggaaccgggtgccgggtcctgcggctgagga
ctcctaacgcggcacacaccctcactggctggagaagccgggttcctgga
ctgagccgggcatgtgactgctcggcggcggtggcaggggccggtgccgg
gggaggggtgtctcgggtagagacccttgggctcggggcagctgaggcgc
cgggcctcctcccctgtggctgcctccaggttccggaccgcgggaatcct
tcgtccctcctagtcctgctctggctctgggacacccagagtggtctctg
tttctccttacctggaacaccctgtttcctgaggaggagcgtcgcccccg
aataagcctcccgcgccctgcctgggaagtctctttctcaccccgagacc
gcctttcgctcgatttcaaccccaagtttgccacggagtccctcattcaa
accatctccctgctgtcaagagatcttcggggcgtcctcccagattgctt
tcgccggcctccgatgtcctgacttctttccaatgtcacctacagccccc
ttggtcacagtgcagcccaaaactttaatgcaaaggaaaagtctggattg
gtttcacaggccttttaaaaagcggacttaaaagttgctggtcatgcatt
tcttctcggcagagtggagagcaagctctcgatgagatctgtgtgacccg
tgtcatttttccggagagcagggcagggaagtgagagcgggcaggaaatt
tgttacaagatggagagacagagaatagggggattgtttgacttccacca
ggaaaagattgcagaagaataataaaagctacttcagccctttgcttctc
gctggggaagttgaaatgaccttcagtgccgtgggccctttttctgactc
ttctgcgataagagtttatctaagatacccctcttgccaaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_31684878_31685020
seq2: B6Ng01-240L10.b_40_182 (reverse)

seq1  CCCCCCCCCCCCATTTCCATAAGCAAGGACTCTGGATCCATGGAATTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCATTTCCATAAGCAAGGACTCTGGATCCATGGAATTCAT  50

seq1  GTTTCAGAGTTTCATTCCGTGATCACCGTACCCCTCCACCTTGCCTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGAGTTTCATTCCGTGATCACCGTACCCCTCCACCTTGCCTGTCA  100

seq1  GGATCACCCTCTCCTTATGGAAACCCTGTGATATAGAGAATTC  143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACCCTCTCCTTATGGAAACCCTGTGATATAGAGAATTC  143

seq1: chr2_31544007_31545037
seq2: B6Ng01-240L10.g_69_1113

seq1  GAATTCCGGCGTCGCTGGGGGCGGGATCGGGGGCGGGGCCTGGCCTCGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGGCGTCGCTGGGGGCGGGATCGGGGGCGGGGCCTGGCCTCGTT  50

seq1  GTGGCGCGGCTCGTAATCCATTATGGCGGCCTCGGGGGTCGGTGTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGCGGCTCGTAATCCATTATGGCGGCCTCGGGGGTCGGTGTCTCTC  100

seq1  CCTGAGAGGCGTCGGAGCTGGAACCGGGTGCCGGGTCCTGCGGCTGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGGCGTCGGAGCTGGAACCGGGTGCCGGGTCCTGCGGCTGAGGA  150

seq1  CTCCTAACGCGGCACACACCCTCACTGGCTGGAGAAGCCGGGTTCCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAACGCGGCACACACCCTCACTGGCTGGAGAAGCCGGGTTCCTGGA  200

seq1  CTGAGCCGGGCATGTGACTGCTCGGCGGCGGTGGCAGGGGCCGGTGCCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCGGGCATGTGACTGCTCGGCGGCGGTGGCAGGGGCCGGTGCCGG  250

seq1  GGGAGGGGTGTCTCGGGTAGAGACCCTTGGGCTCGGGGCAGCTGAGGCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGTGTCTCGGGTAGAGACCCTTGGGCTCGGGGCAGCTGAGGCGC  300

seq1  CGGGCCTCCTCCCCTGTGGCTGCCTCCAGGTTCCGGACCGCGGGAATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCTCCTCCCCTGTGGCTGCCTCCAGGTTCCGGACCGCGGGAATCCT  350

seq1  TCGTCCCTCCTAGTCCTGCTCTGGCTCTGGGACACCCAGAGTGGTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCCTCCTAGTCCTGCTCTGGCTCTGGGACACCCAGAGTGGTCTCTG  400

seq1  TTTCTCCTTACCTGGAACACCCTGTTTCCTGAGGAGGAGCGTCGCCCCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTACCTGGAACACCCTGTTTCCTGAGGAGGAGCGTCGCCCCCG  450

seq1  AATAAGCCTCCCGCGCCCTGCCTGGGAAGTCTCTTTCTCACCCCGAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCCTCCCGCGCCCTGCCTGGGAAGTCTCTTTCTCACCCCGAGACC  500

seq1  GCCTTTCGCTCGATTTCAACCCCAAGTTTGCCACGGAGTCCCTCATTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCGCTCGATTTCAACCCCAAGTTTGCCACGGAGTCCCTCATTCAA  550

seq1  ACCATCTCCCTGCTGTCAAGAGATCTTCGGGGCGTCCTCCCAGATTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCCCTGCTGTCAAGAGATCTTCGGGGCGTCCTCCCAGATTGCTT  600

seq1  TCGCCGGCCTCCGATGTCCTGACTTC-TTCCAATGTCACCTACAGCCCCC  649
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCGCCGGCCTCCGATGTCCTGACTTCTTTCCAATGTCACCTACAGCCCCC  650

seq1  TTGGTCACAGTGCAGCCCAAAACTTTAATGCAAAGGAAAAGTCTGGATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCACAGTGCAGCCCAAAACTTTAATGCAAAGGAAAAGTCTGGATTG  700

seq1  GTTTCACAGGCCTTTTAAAAAGCGGACTTAAAAGTTGCTGGTCATGCATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACAGGCCTTTTAAAAAGCGGACTTAAAAGTTGCTGGTCATGCATT  750

seq1  TCTTCTCGGCAGAGTGGAGAGCAAGCTCTCGATGAGATCTGTGTGACCCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCGGCAGAGTGGAGAGCAAGCTCTCGATGAGATCTGTGTGACCCG  800

seq1  TGTCATTTTTCCGGAGAGCAGGGCAGGGAAGTGAGAGC-GGCAGGAAATT  848
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTCATTTTTCCGGAGAGCAGGGCAGGGAAGTGAGAGCGGGCAGGAAATT  850

seq1  TGTTACAAGATGGAGAGACAGAG-ATA-GGGGATTGGTTGACTTCCAC--  894
      ||||||||||||||||||||||| ||| |||||||| |||||||||||  
seq2  TGTTACAAGATGGAGAGACAGAGAATAGGGGGATTGTTTGACTTCCACCA  900

seq1  AGAAAAGATTGCAG-AGAAT-ATAAAAGC-AGCTCAG-CCTTTGCTTCTC  940
       ||||||||||||| ||||| |||||||| |  |||| ||||||||||||
seq2  GGAAAAGATTGCAGAAGAATAATAAAAGCTACTTCAGCCCTTTGCTTCTC  950

seq1  GCTGGGG-AGTTGAAATGACTTTCAGTGCCGTTGGCCC-TTTTCTGACTT  988
      ||||||| |||||||||||| ||||||||||| ||||| |||||||||| 
seq2  GCTGGGGAAGTTGAAATGACCTTCAGTGCCGTGGGCCCTTTTTCTGACTC  1000

seq1  TTCTGTGAATAG-TTTTATCTAAAGTTCCCCTCTTG-CAAAGAAA  1031
      ||||| ||  ||  |||||||||  | ||||||||| ||||||||
seq2  TTCTGCGATAAGAGTTTATCTAAGATACCCCTCTTGCCAAAGAAA  1045