BAC Information

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BAC

Clone NameB6Ng01-242P19
Chromosome2 (Build37)
Map Location 177,522,296 - 177,523,076
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039123, LOC626877, LOC100039156, LOC100039166, 6230416C02Rik, LOC635470, LOC100043403, LOC100039198, LOC100043406, LOC668066, LOC621442, LOC628308, OTTMUSG00000016571, LOC100039233, LOC626802
Downstream geneLOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242P19.bB6Ng01-242P19.g
ACCGA052491GA052492
length9501,146
definitionB6Ng01-242P19.b B6Ng01-242P19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctttgtaccccattttttaatagggttatttagtt
ttctggagtccaccttcatgagttctttacatatactggatattattctc
ctatctgatttaatattggtaaatatcttttctcaatctgttgttagcct
ttctgtcttattgacagtgtcctttgccttacagaagctttgcaatttta
tgaggtcccatttgttgatttgcgatctcacagcacaagccattgctgat
ctgttcaggaatttttcccctatgcccatatctttgaggctcttgcacat
gttcctttctataagtgtcagtgtctctggtgttatgtggagttccttga
tccacttacacctgagttttgtacaaggagatgagaatggataagtttgc
attcttctacattctacccaccacttgaggtagcaccatttgttgaaaat
gctttcctttttccactggatggtttttgctcctttgtcaaagatcaagt
gacttcctcctttccagtatgaatccccttaatctccttttgttgcctaa
ttgctctagctaggatttcacgtactatgttgaatagatagggagagagt
gggcagccttgtctagtccctgatttcagtgagattgcttcaagtttctc
tccatttagtttgatgttggctactggtttgctgtatattgcttttatta
tctttagatatgggccttgaattcttgatctttccaagacttttatcatg
aatggatgttggattttgtcaattgctttctcagcatctaatgagatgat
catgtggtttttgtctttgagtttgtttatatagtgtattttgttgatga
atttccatatattaaacccatccctgcatctctggtatgaagttcttact
tgaaccatgaagggatgatcattgtttgatgttccttgggaattctgggc

gaattctctccatttttttattgctgtgaaaaaaaaccaaacaaaagcaa
cataaagaaatgtttattggggacttacactttcaaggtaagtacaataa
gagtttgtggacattattggaggatattcaatcacatcgtgaaccttaag
attgtgaaaaaaaaaaagtgttccttgtgctgtggctcagctctaacata
caactttaatactaagtaagagctttctgtaagcaagattaaataaagtt
gaccataggttaataggcgagcaagttgccagttgagaggaaatgaacac
aggatgtggaaaggaaggccattatttgaagagtatttagcacagattgg
aagaggggaaagggccctttccctctgggaagtcagttgaggaagttaag
ctgggttctttctctctgattctctggtcttgaagacattcacatcttca
tcagcctcctcagtcttcattagtagaactgaatgtctgggaagttgttt
tttctttttttaaaaacaaacaaacaaacaaaacaaatcaaaggatcata
atgtcagaaaatgtggcaatcagtaggttgcagggagttgccttagtagg
tagacattacatcttgatctagtatcaaagtagaaaagaaggacaagcta
gggaaaaaaaaaccactcagattggttgggtttaggaaaacctcaaagtc
tgcctgccaccactgacacacctcccgtaacagggccacatccctaatcc
ttcctaaatgtcccaccatctagggaccaagtattcaaacatataagtgt
attgcaatgattctcattcaaaacccctggaggtccttatgctaagtgaa
atgagccagccacaaaatgaacagcaaacacttcttgatccttagagcta
gcaatacacagatttggagtcaagataggagacaaaaaattggttgagta
aagtaattaatgtttccatacacacaaagatatgtttgaaagaccattat
ggattcaaggtgatctatcacacaaagacccagaattaaaatactttttc
cagatgaactatataagaaaaatacctcacagataccactcttctgtttt
aagaaattcgatggtcaattgactgacagtacctagcctgcagtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_177522296_177523076
seq2: B6Ng01-242P19.g_461_1214

seq1  AAGATAAGCTGAGTTCTT--TCTCTGCCTCTCTGGTCTTGAAGGCATTCA  48
      ||| ||||||| ||||||  ||||||  ||||||||||||||| ||||||
seq2  AAGTTAAGCTGGGTTCTTTCTCTCTGATTCTCTGGTCTTGAAGACATTCA  50

seq1  CAACTTCATCAGCCTCCTCAGTCTTCATTGGTAAAACTGAATATCTGGGA  98
      || |||||||||||||||||||||||||| ||| |||||||| |||||||
seq2  CATCTTCATCAGCCTCCTCAGTCTTCATTAGTAGAACTGAATGTCTGGGA  100

seq1  AGTTGTTTTTTCTTTTTTTAAAAACAAACAAACAAACAAACAAAACAAAT  148
      |||||||||||||||||||||    |||||||||||||||||||||||||
seq2  AGTTGTTTTTTCTTTTTTTAA----AAACAAACAAACAAACAAAACAAAT  146

seq1  CAAAGGATCATAATGTCAGAAAATGTGGCAATCAGTAGGTTGCAGGGAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGATCATAATGTCAGAAAATGTGGCAATCAGTAGGTTGCAGGGAGT  196

seq1  TGCCTTAGTAGGTAGACATTACATCTTGATCTAGTATCAAAGTAGAAAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAGTAGGTAGACATTACATCTTGATCTAGTATCAAAGTAGAAAAG  246

seq1  AAGGACAAGCTAGGGAAAAAAAAAACACTCAGATTGGTTGGGTTTAGGAA  298
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAGGACAAGCTAGGGAAAAAAAAACCACTCAGATTGGTTGGGTTTAGGAA  296

seq1  AACCTC-AAGTCTGCCTGCCACCACTGACACACCTCCCGTAACAGGGCCA  347
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAAAGTCTGCCTGCCACCACTGACACACCTCCCGTAACAGGGCCA  346

seq1  CATCTCTAATCCTTCCTAAATGTCCCACCATCTAGGGACCAAGTATTCAA  397
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTAATCCTTCCTAAATGTCCCACCATCTAGGGACCAAGTATTCAA  396

seq1  ACATATAAGTGTATTGCAATGATTCTCATTCAAAACCCCTGGAGGTCCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAAGTGTATTGCAATGATTCTCATTCAAAACCCCTGGAGGTCCTT  446

seq1  ATGCTAAGTGAAATGAGCCAGCCACAAAATGAACAGCAAACACTTCTTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAGTGAAATGAGCCAGCCACAAAATGAACAGCAAACACTTCTTGA  496

seq1  TCCTTAGAGCTAGCAAATACACAGATTTGGAGTCAAGAATAGGAGACAAA  547
      |||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  TCCTTAGAGCTAGC-AATACACAGATTTGGAGTCAAG-ATAGGAGACAAA  544

seq1  AAATTGGTTGAGTAAAGTAAATTTAATGTTTCCATACACACAAAGGATAT  597
      ||||||||||||||||||||  |||||||||||||||||||||| |||||
seq2  AAATTGGTTGAGTAAAGTAA--TTAATGTTTCCATACACACAAA-GATAT  591

seq1  GTTTGAAAGACCAATTATGGATTCAAGGTGGATCTTATCACCACAAAAGA  647
      |||||||||||| |||||||||||||||| |||| ||||| ||| |||||
seq2  GTTTGAAAGACC-ATTATGGATTCAAGGT-GATC-TATCA-CAC-AAAGA  636

seq1  CCCAGATTAAAAATACTTTTCCCAGATTGAAAACTATAATTAAGAAAAAT  697
      |||||| | ||||||||||| ||||||    |||||||  ||||||||||
seq2  CCCAGAATTAAAATACTTTTTCCAGAT---GAACTATA--TAAGAAAAAT  681

seq1  ACCTCACAG-TACCCAACTCTTTCTGTTTTAGGTAATTCCAGATGTGTCC  746
      ||||||||| ||||  |||| |||||||||| | |||||  |||| ||| 
seq2  ACCTCACAGATACC--ACTC-TTCTGTTTTAAGAAATTC--GATG-GTC-  724

seq1  AATTTGACTGACAAGTATACCTAGCACAGCAGTTA  781
       | ||||||||||    |||||||| | |||||||
seq2  -AATTGACTGACA---GTACCTAGC-CTGCAGTTA  754