BAC Information

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BAC

Clone NameB6Ng01-243E15
Chromosome2 (Build37)
Map Location 58,726,163 - 58,864,608
singlet/doubletdoublet
Overlap geneBC062650
Upstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1, LOC674940, Upp2
Downstream genePkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243E15.bB6Ng01-243E15.g
ACCGA052714GA052715
length1,1491,147
definitionB6Ng01-243E15.b B6Ng01-243E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,726,163 - 58,727,309)(58,863,451 - 58,864,608)
sequence
gaattcacacgcaagcagcagaggtggcagagtgctatggttgagctcac
tttctctagaactacagttcatggactgatgctttacagcgggccgtccc
tcctcacttaccacatctacaaacttcctctaagacatgcatgctcagac
gtttgtcaggttgacaattaatattacccatcgcagcttgggtgtccatt
acccaaagaagctgtgtttatgggaagattgttgagcccctagacgtggc
tgaatggcaggaaaatgaacaaaggaggtgcgtcagcatatgtgcccaga
gctgggagacgaggagaaggcaagctaataatagcatcccacgattggtg
actggaccagctgggatcgtgtgcagagggagctcagctattacagttat
catcccaacctgtactgccaacagctttctagtctgggcttgcagctatc
ctgatgaatctggaagttaaccaggtagccgtctattcaattttttgttg
ttgttgttttgtttgtttttttttttgttttgttttgttttgtttttgtt
tttgtttttgtttttgtttttcgagacagggtttctctgtatagttctgg
ctgtcctggaactcactttgtagactaggctggcctcggactcagaaatc
cgcctgcctctgcctcctgagtgctgggattaaaggcgtgcgccaccatg
cccggcttcaatatttcttttttaccacaaataatttgttgtttcggtaa
caggaccccgattaatacaaagaggttggaccacatgctccccagggctc
ctatataactctatacaatactcaataaagtacacaaagaaaataagccg
gattgcaagtacattccctttactggccatttaattattaatatcagttt
gggggtgtggggcagtggtagttcccaatggtaatcttcaagcgtttggt
ctgtaaacttgtacccccacacagcagtggcatttgggaaagctgtcatc
accagttttcccacctgctaactttaatgacacctggttaagtttctgcc
ctacccgcatgcagctttataaaaaatatccctaagtctaagctacaagg
cagatattcactggctaagtgaattgatgaacctctcctgagactaagg
gaattcattatttttgacattctttcctcaaagtattttaagtcaccagc
attctgcatacattatcatcaccttaaagatgattttatatggcttgtta
cccaggaagatgaattggaatcatgtagaaatctctgctgaagatacaac
tttaaatctttgagttcttttaaaagcctttttttttcttttccatttgt
ggcctgaggatacgagtagagttgatggctgaatttcccaaaacaaaaca
aaaaacaacaattaagacgttgcacaaagtgttggaactgttcaatgaaa
aatagtacgtgatttttttacttttatattctatttaattggcctttctt
tgagcccaaaggcaacaacattgatttttttccttaagctataaaaaata
tgttcacatcttctaccaatgtgttttaattttttgtacaacatggacca
aatatgtcaaaggaatctaattttaaaattctgtctgttgcaagaaactt
tagagactatagatggtagaaatttaaagttggttttagacattcttaac
tcaagggctaacgtgccagactgtagacataatgcactctttcatttttc
cataggtagaaaccaaatgttcttcccaacaccccctacctaatttttct
taaacttcaaaattataacagcctcaggaacttctgtggaaacgacttga
tttttgtccttttgaagtcatcctttggattaatgtgtttgctcctgtcc
ctaattttgaatcagaaacccgaagagcacaaagataaactcaaggttaa
cgcaatcagtgtacagcagctggaaatagcctgcattatgagatcccttt
tgggaacttgtcttctcaagttcattattgatatttcactgctatgcagt
actttatagcagagaagtagtttaatagtagagaaagtatgaaatatgta
catttttttgtccagttctgattcccactttctttttaaagatttactgt
attatttgtagttgtgtgatgtgtgtgtctgagtgcatgtgagtacagtg
ctaacagaaggcagagagttcgggatcccctgaactagaagttgtgacta
catgaagggtgctggaatcagccttggtcttctgcagaacaggccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_58726163_58727309
seq2: B6Ng01-243E15.b_49_1197

seq1  GAATTCACACGCAAGCAGCAGAGGTGGCAGAGTGCTATGGTTGAGCTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACGCAAGCAGCAGAGGTGGCAGAGTGCTATGGTTGAGCTCAC  50

seq1  TTTCTCTAGAACTACAGTTCATGGACTGATGCTTTACAGCGGGCCGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTAGAACTACAGTTCATGGACTGATGCTTTACAGCGGGCCGTCCC  100

seq1  TCCTCACTTACCACATCTACAAACTTCCTCTAAGACATGCATGCTCAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTTACCACATCTACAAACTTCCTCTAAGACATGCATGCTCAGAC  150

seq1  GTTTGTCAGGTTGACAATTAATATTACCCATCGCAGCTTGGGTGTCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCAGGTTGACAATTAATATTACCCATCGCAGCTTGGGTGTCCATT  200

seq1  ACCCAAAGAAGCTGTGTTTATGGGAAGATTGTTGAGCCCCTAGACGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGAAGCTGTGTTTATGGGAAGATTGTTGAGCCCCTAGACGTGGC  250

seq1  TGAATGGCAGGAAAATGAACAAAGGAGGTGCGTCAGCATATGTGCCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGCAGGAAAATGAACAAAGGAGGTGCGTCAGCATATGTGCCCAGA  300

seq1  GCTGGGAGACGAGGAGAAGGCAAGCTAATAATAGCATCCCACGATTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGACGAGGAGAAGGCAAGCTAATAATAGCATCCCACGATTGGTG  350

seq1  ACTGGACCAGCTGGGATCGTGTGCAGAGGGAGCTCAGCTATTACAGTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACCAGCTGGGATCGTGTGCAGAGGGAGCTCAGCTATTACAGTTAT  400

seq1  CATCCCAACCTGTACTGCCAACAGCTTTCTAGTCTGGGCTTGCAGCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAACCTGTACTGCCAACAGCTTTCTAGTCTGGGCTTGCAGCTATC  450

seq1  CTGATGAATCTGGAAGTTAACCAGGTAGCCGTCTATTCAATTTTTTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAATCTGGAAGTTAACCAGGTAGCCGTCTATTCAATTTTTTGTTG  500

seq1  TTGTTGTTTTGTTTGTTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTTTGTTTGTTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTTGTT  550

seq1  TTTGTTTTTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGTTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGTTCTGG  600

seq1  CTGTCCTGGAACTCACTTTGTAGACTAGGCTGGCCTCGGACTCAGAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGAACTCACTTTGTAGACTAGGCTGGCCTCGGACTCAGAAATC  650

seq1  CGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCGCCACCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCGCCACCATG  700

seq1  CCCGGCTTCAATATTTCTTTTTTACCACAAATAATTTGTTGTTTCGGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCTTCAATATTTCTTTTTTACCACAAATAATTTGTTGTTTCGGTAA  750

seq1  CAGGACCCCGATTAATACAAAGAGGTTGGACCACATGCTCCCCAGGGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCCCGATTAATACAAAGAGGTTGGACCACATGCTCCCCAGGGCTC  800

seq1  CTATATAACTCTATACAATACTCAATAAAGTACACAAAGAAAATAAGCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAACTCTATACAATACTCAATAAAGTACACAAAGAAAATAAGCCG  850

seq1  GATTGCAAGTACATTCCCTTTACTGGCCATTTAATTATTAATATCAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAAGTACATTCCCTTTACTGGCCATTTAATTATTAATATCAGTTT  900

seq1  GGGGGTGTGGGGCAGTGGTAGTTCCCAATGGTAATCTTCAAGCGTTTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGGGTGTGGGGCAGTGGTAGTTCCCAATGGTAATCTTCAAGCGTTTGG-  949

seq1  TCTGTAAACTTGTA-CCCCACACAGCAGTGGCATTTGGGGAAAGCTGTCA  999
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  TCTGTAAACTTGTACCCCCACACAGCAGTGGCATTT-GGGAAAGCTGTCA  998

seq1  TCACCAGTTTTCCCA-CTGCTTACTTTAATGACACCT-GTTAAGTTTCTG  1047
      ||||||||||||||| ||||| ||||||||||||||| ||||||||||||
seq2  TCACCAGTTTTCCCACCTGCTAACTTTAATGACACCTGGTTAAGTTTCTG  1048

seq1  -CCTACCCGGCCATGCAGCTTTAT--AAAATATCCCTAAAGTCTCAGCCT  1094
       ||||||||  |||||||||||||  ||||||||||| |||||| || ||
seq2  CCCTACCCG--CATGCAGCTTTATAAAAAATATCCCT-AAGTCTAAG-CT  1094

seq1  ACAAGGCCAGATATTTACTGCCTAATGTG-ATTAGTGA--CTCTCCTGAG  1141
      |||||| |||||||| |||| |||| ||| |||  |||  ||||||||||
seq2  ACAAGG-CAGATATTCACTGGCTAA-GTGAATTGATGAACCTCTCCTGAG  1142

seq1  -CTAAGG  1147
       ||||||
seq2  ACTAAGG  1149

seq1: chr2_58863451_58864608
seq2: B6Ng01-243E15.g_65_1211 (reverse)

seq1  CTGG-CTGTTCTTGCAGAAGACCCAGGTTTGATTCTCAGCACCC-TCATG  48
      |||| |||||| ||||||||||| |||  |||||| |||||||| |||| 
seq2  CTGGCCTGTTC-TGCAGAAGACCAAGG-CTGATTC-CAGCACCCTTCAT-  46

seq1  GTATTTCACAAC-TCTAGGTTCAGGGGATCCGAAAACCTCTTCTGGCCTC  97
      |||  ||||||| |||| |||||||||||||  ||  ||| |||| | ||
seq2  GTA-GTCACAACTTCTA-GTTCAGGGGATCCCGAA--CTC-TCTGCCTTC  91

seq1  TG-TAGCACTGTACTCACATGCCACTCAGACACACACATCCACACAACTA  146
      || |||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  TGTTAGCACTGTACTCACATG-CACTCAGACACACACAT-CACACAACTA  139

seq1  CAAAATAATACAAGTAAATCTTTTAAAAAAGAAAGTGGGAATCAGAAACT  196
      | ||||||||| |||||||||||  |||||||||||||||||||| ||||
seq2  C-AAATAATAC-AGTAAATCTTT--AAAAAGAAAGTGGGAATCAG-AACT  184

seq1  GGACAAAAAAATGTACATATTTCATACTTTCTCTACTA-TAAACTACTTC  245
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGACAAAAAAATGTACATATTTCATACTTTCTCTACTATTAAACTACTTC  234

seq1  TCTGCTATAAAGTACTGCATAGCAGTGAAATATCAATAATGAACTTGAGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTATAAAGTACTGCATAGCAGTGAAATATCAATAATGAACTTGAGA  284

seq1  AGACAAGTTCCCAAAAGGGATCTCATAATGCAGGCTATTTCCAGCTGCTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTTCCCAAAAGGGATCTCATAATGCAGGCTATTTCCAGCTGCTG  334

seq1  TACACTGATTGCGTTAACCTTGAGTTTATCTTTGTGCTCTTCGGGTTTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGATTGCGTTAACCTTGAGTTTATCTTTGTGCTCTTCGGGTTTCT  384

seq1  GATTCAAAATTAGGGACAGGAGCAAACACATTAATCCAAAGGATGACTTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAAATTAGGGACAGGAGCAAACACATTAATCCAAAGGATGACTTC  434

seq1  AAAAGGACAAAAATCAAGTCGTTTCCACAGAAGTTCCTGAGGCTGTTATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGACAAAAATCAAGTCGTTTCCACAGAAGTTCCTGAGGCTGTTATA  484

seq1  ATTTTGAAGTTTAAGAAAAATTAGGTAGGGGGTGTTGGGAAGAACATTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAAGTTTAAGAAAAATTAGGTAGGGGGTGTTGGGAAGAACATTTG  534

seq1  GTTTCTACCTATGGAAAAATGAAAGAGTGCATTATGTCTACAGTCTGGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTACCTATGGAAAAATGAAAGAGTGCATTATGTCTACAGTCTGGCA  584

seq1  CGTTAGCCCTTGAGTTAAGAATGTCTAAAACCAACTTTAAATTTCTACCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGCCCTTGAGTTAAGAATGTCTAAAACCAACTTTAAATTTCTACCA  634

seq1  TCTATAGTCTCTAAAGTTTCTTGCAACAGACAGAATTTTAAAATTAGATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGTCTCTAAAGTTTCTTGCAACAGACAGAATTTTAAAATTAGATT  684

seq1  CCTTTGACATATTTGGTCCATGTTGTACAAAAAATTAAAACACATTGGTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGACATATTTGGTCCATGTTGTACAAAAAATTAAAACACATTGGTA  734

seq1  GAAGATGTGAACATATTTTTTATAGCTTAAGGAAAAAAATCAATGTTGTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTGAACATATTTTTTATAGCTTAAGGAAAAAAATCAATGTTGTT  784

seq1  GCCTTTGGGCTCAAAGAAAGGCCAATTAAATAGAATATAAAAGTAAAAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGGCTCAAAGAAAGGCCAATTAAATAGAATATAAAAGTAAAAAA  834

seq1  ATCACGTACTATTTTTCATTGAACAGTTCCAACACTTTGTGCAACGTCTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGTACTATTTTTCATTGAACAGTTCCAACACTTTGTGCAACGTCTT  884

seq1  AATTGTTGTTTTTTGTTTTGTTTTGGGAAATTCAGCCATCAACTCTACTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTGTTTTTTGTTTTGTTTTGGGAAATTCAGCCATCAACTCTACTC  934

seq1  GTATCCTCAGGCCACAAATGGAAAAGAAAAAAAAAGGCTTTTAAAAGAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTCAGGCCACAAATGGAAAAGAAAAAAAAAGGCTTTTAAAAGAAC  984

seq1  TCAAAGATTTAAAGTTGTATCTTCAGCAGAGATTTCTACATGATTCCAAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATTTAAAGTTGTATCTTCAGCAGAGATTTCTACATGATTCCAAT  1034

seq1  TCATCTTCCTGGGTAACAAGCCATATAAAATCATCTTTAAGGTGATGATA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCCTGGGTAACAAGCCATATAAAATCATCTTTAAGGTGATGATA  1084

seq1  ATGTATGCAGAATGCTGGTGACTTAAAATACTTTGAGGAAAGAATGTCAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCAGAATGCTGGTGACTTAAAATACTTTGAGGAAAGAATGTCAA  1134

seq1  AAATAATGAATTC  1158
      |||||||||||||
seq2  AAATAATGAATTC  1147