BAC Information

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BAC

Clone NameB6Ng01-243M07
Chromosome2 (Build37)
Map Location 72,990,365 - 73,119,384
singlet/doubletdoublet
Overlap geneGtpbp9, Sp9
Upstream geneRapgef4, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, LOC620110
Downstream gene1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243M07.bB6Ng01-243M07.g
ACCGA053066GA053067
length9781,104
definitionB6Ng01-243M07.b B6Ng01-243M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,990,365 - 72,991,335)(73,118,293 - 73,119,384)
sequence
gaattctgctgcctctgtctctgtagtacagggaatataaatgtgctaaa
gcaccctgcttttatatgtagcttctggagatcaaacttaggacctctta
caagcattttgccaattgagctatcttcctagtctatgcattgtgaagtt
ttaaactgattgatctactgaagtgtttatttaactttagggtttgattt
ctataaacttactttatagtagctataaagggtctagagcagtggctcag
aggttaacagtacttgctgctcttacagagagttccgttcctactcatat
gctgctcatgtctagttacaggcagttctgagactttcttcaggccttta
taggtaccaggcactcacataatacacatacacataagcaggcactcaca
catacacataaaaataaatacataaataaaaggataaaaaagtagaagtt
tacctaagcatttgacattcttaatgtattattttaatgtaataagccaa
atagaaaagaataaataccatttaattatattttataagacatctaggct
agagagggctcaaaggttaagagcacttgactgctcttccagaggtcctg
agttcaattcccagcaacaacatggtggatcacaaccatctgtaagaggt
tctgatgccctcttcttgtgtgccatatattataaatataatatataata
taatatatcatatatattaaatgaataaataaatctttaaaaacaacaac
aaaaaaagacatctagaataggcaaatctttggagacagaaaggaaaaca
aaagctaccagtagaaagtaagaaatcactgccatttgtttgaagacagg
gtttttctatgtagcccagggcttgtcttggagctcacttaacagaccat
gctgggtctactactcacatgcgatctttctgccctctgctctcaaaatc
tcttgtgcaaagcatgcatcacttaatg
gaattcttatcaccttccttccctcctcgcttcacctcacacttagcacc
ccagagccccacaatacacctaatactgtagagaagtgcggattgagacg
cgaaggtctgattgtaatagatttgaccaaactgcctagtcgcctacccg
cgactcaagacagggaaaacctctggcctttgcctggcagcggctttcgg
ggtgccgaggccttcggagccggtcagatctccacttgaaagggtatcac
acggaacccaaaggataggctgatcaggtgtcgctaggccatccgtagat
gccagggcacaccgcgttctctgggacttttccgggattctcgcctggca
accagggacacagcacacagagagaagctgggaatttgggggcgcacaac
cgtccatgttccgtccacaagcctttcaaaacagtgtcagcttagctttt
tgcatgggtcccctggcgctggcccgcggtggcccaaacccaaccagaag
acactcccaggcccctccgagaggctgcggcgcccccgagggcctggacc
ttgcctccctgtccctactgaagcttgcccggcttccctcgtgtgtcccc
tgcgcgggtcgcaggacgcactcgcccgccttgccttgaaaggcaagaga
atttttctgctccctagggctccacaggtgaagaccgcgcttagggaagc
caatgctaatctctagctcctgacgcaaaagaagaaaatgccaactctct
tagcaattgacaaaaagaaagcggactgagggagtctcaccctatccctg
catttctttcatcaatgaatcgcccctgaagtggcaagatgcctgcgaac
aatgcaaaatccacagtgaatttcccaaagagaaagaaggctaccgtctg
ggaaaacctacagctcaaacgtttaagctttcccggatcctggccaacta
acctgactctggaggaatgtgtccccacggacatttagaaatcttaagag
ttccaaacaccgtacattattttataccaattaatatatgggggaggcaa
gtctgtattgtattttaccttcatacatatttcttataaacctccagccg
tctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_72990365_72991335
seq2: B6Ng01-243M07.b_47_1024

seq1  GAATTCTGCTGCCTCTGTCTCTGTAGTACAGGGAATATAAATGTGCTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGCCTCTGTCTCTGTAGTACAGGGAATATAAATGTGCTAAA  50

seq1  GCACCCTGCTTTTATATGTAGCTTCTGGAGATCAAACTTAGGACCTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTGCTTTTATATGTAGCTTCTGGAGATCAAACTTAGGACCTCTTA  100

seq1  CAAGCATTTTGCCAATTGAGCTATCTTCCTAGTCTATGCATTGTGAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTTTGCCAATTGAGCTATCTTCCTAGTCTATGCATTGTGAAGTT  150

seq1  TTAAACTGATTGATCTACTGAAGTGTTTATTTAACTTTAGGGTTTGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGATTGATCTACTGAAGTGTTTATTTAACTTTAGGGTTTGATTT  200

seq1  CTATAAACTTACTTTATAGTAGCTATAAAGGGTCTAGAGCAGTGGCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAACTTACTTTATAGTAGCTATAAAGGGTCTAGAGCAGTGGCTCAG  250

seq1  AGGTTAACAGTACTTGCTGCTCTTACAGAGAGTTCCGTTCCTACTCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAACAGTACTTGCTGCTCTTACAGAGAGTTCCGTTCCTACTCATAT  300

seq1  GCTGCTCATGTCTAGTTACAGGCAGTTCTGAGACTTTCTTCAGGCCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCATGTCTAGTTACAGGCAGTTCTGAGACTTTCTTCAGGCCTTTA  350

seq1  TAGGTACCAGGCACTCACATAATACACATACACATAAGCAGGCACTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACCAGGCACTCACATAATACACATACACATAAGCAGGCACTCACA  400

seq1  CATACACATAAAAATAAATACATAAATAAAAGGATAAAAAAGTAGAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATAAAAATAAATACATAAATAAAAGGATAAAAAAGTAGAAGTT  450

seq1  TACCTAAGCATTTGACATTCTTAATGTATTATTTTAATGTAATAAGCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAGCATTTGACATTCTTAATGTATTATTTTAATGTAATAAGCCAA  500

seq1  ATAGAAAAGAATAAATACCATTTAATTATATTTTATAAGACATCTAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAGAATAAATACCATTTAATTATATTTTATAAGACATCTAGGCT  550

seq1  AGAGAGGGCTCAAAGGTTAAGAGCACTTGACTGCTCTTCCAGAGGTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGCTCAAAGGTTAAGAGCACTTGACTGCTCTTCCAGAGGTCCTG  600

seq1  AGTTCAATTCCCAGCAACAACATGGTGGATCACAACCATCTGTAAGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATTCCCAGCAACAACATGGTGGATCACAACCATCTGTAAGAGGT  650

seq1  TCTGATGCCCTCTTCTTGTGTGCCATATATTATAAATATAATATATAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGCCCTCTTCTTGTGTGCCATATATTATAAATATAATATATAATA  700

seq1  TAATATATCATATATATTAAATGAATAAATAAATCTTTAAAAACAACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATCATATATATTAAATGAATAAATAAATCTTTAAAAACAACAAC  750

seq1  AAAAAAAGACATCTAGAATAGGCAAATCTTTGGAGACAGAAAGGAAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGACATCTAGAATAGGCAAATCTTTGGAGACAGAAAGGAAAACA  800

seq1  AAAGCTACCAGTAGAAAGTAAGAAATCACTGCCATTTGTTTGAAGACAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTACCAGTAGAAAGTAAGAAATCACTGCCATTTGTTTGAAGACAGG  850

seq1  G-TTTTCTATGTAGCCCAGG--CTGTCCTGGAGCTCACTTAACAGACCAT  897
      | ||||||||||||||||||   |||| ||||||||||||||||||||||
seq2  GTTTTTCTATGTAGCCCAGGGCTTGTCTTGGAGCTCACTTAACAGACCAT  900

seq1  GCT-GGTCTACAACTCACATGC-ATCTTCCTG-CCTCTGCCTCCCAAATC  944
      ||| ||||||| |||||||||| ||||| ||| |||||||   | |||||
seq2  GCTGGGTCTACTACTCACATGCGATCTTTCTGCCCTCTGCTCTCAAAATC  950

seq1  TC-TGGGCAAAGGCATGCATCAC-TAATG  971
      || || ||||| ||||||||||| |||||
seq2  TCTTGTGCAAA-GCATGCATCACTTAATG  978

seq1: chr2_73118293_73119384
seq2: B6Ng01-243M07.g_69_1172 (reverse)

seq1  CAGAC-GCTGGA-GTTTAT-AGAAATATGTATG-AGGT-AAATAC-ATAC  44
      ||||| |||||| |||||| ||||||||||||| |||| |||||| ||||
seq2  CAGACGGCTGGAGGTTTATAAGAAATATGTATGAAGGTAAAATACAATAC  50

seq1  AGACTTGCCT-CCCCATATATT-ATTGGTATAAA--TATGTACGGTGTTT  90
      |||||||||| ||||||||||| |||||||||||   |||||||||||||
seq2  AGACTTGCCTCCCCCATATATTAATTGGTATAAAATAATGTACGGTGTTT  100

seq1  GGAACTCTTAAGATTTCTAAATGTCCGTGGGGACACATTCCTCCAGAGTC  140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCTTAAGATTTCTAAATGTCCGTGGGGACACATTCCTCCAGAGTC  150

seq1  A-GTTAGTTGGCCAGGATCCGGGAAAGCTT-AACGTTTGAGCTGTAGGTT  188
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGGTTAGTTGGCCAGGATCCGGGAAAGCTTAAACGTTTGAGCTGTAGGTT  200

seq1  TTCCCAGACGGTAGCCTTCTTTCTCTTT-GGAAATTCACTGTGGATTTTG  237
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCCCAGACGGTAGCCTTCTTTCTCTTTGGGAAATTCACTGTGGATTTTG  250

seq1  CATTGTTTCGCAGGCATCTTGCCACTTCAGGGGCGATTCATTGATGAAAG  287
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTG-TTCGCAGGCATCTTGCCACTTCAGGGGCGATTCATTGATGAAAG  299

seq1  AAATGCAGGGATAGGGTGAGACTCCCTCAGTCCGCTTTCTTTTTGTCAAT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGGGATAGGGTGAGACTCCCTCAGTCCGCTTTCTTTTTGTCAAT  349

seq1  TGCTAAGAGAGTTGGCATTTTCTTCTTTTGCGTCAGGAGCTAGAGATTAG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGAGAGTTGGCATTTTCTTCTTTTGCGTCAGGAGCTAGAGATTAG  399

seq1  CATTGGCTTCCCTAAGCGCGGTCTTCACCTGTGGAGCCCTAGGGAGCAGA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCTTCCCTAAGCGCGGTCTTCACCTGTGGAGCCCTAGGGAGCAGA  449

seq1  AAAATTCTCTTGCCTTTCAAGGCAAGGCGGGCGAGTGCGTCCTGCGACCC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTCTTGCCTTTCAAGGCAAGGCGGGCGAGTGCGTCCTGCGACCC  499

seq1  GCGCAGGGGACACACGAGGGAAGCCGGGCAAGCTTCAGTAGGGACAGGGA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGGGGACACACGAGGGAAGCCGGGCAAGCTTCAGTAGGGACAGGGA  549

seq1  GGCAAGGTCCAGGCCCTCGGGGGCGCCGCAGCCTCTCGGAGGGGCCTGGG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGTCCAGGCCCTCGGGGGCGCCGCAGCCTCTCGGAGGGGCCTGGG  599

seq1  AGTGTCTTCTGGTTGGGTTTGGGCCACCGCGGGCCAGCGCCAGGGGACCC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTCTGGTTGGGTTTGGGCCACCGCGGGCCAGCGCCAGGGGACCC  649

seq1  ATGCAAAAAGCTAAGCTGACACTGTTTTGAAAGGCTTGTGGACGGAACAT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAAAGCTAAGCTGACACTGTTTTGAAAGGCTTGTGGACGGAACAT  699

seq1  GGACGGTTGTGCGCCCCCAAATTCCCAGCTTCTCTCTGTGTGCTGTGTCC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGTTGTGCGCCCCCAAATTCCCAGCTTCTCTCTGTGTGCTGTGTCC  749

seq1  CTGGTTGCCAGGCGAGAATCCCGGAAAAGTCCCAGAGAACGCGGTGTGCC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGCCAGGCGAGAATCCCGGAAAAGTCCCAGAGAACGCGGTGTGCC  799

seq1  CTGGCATCTACGGATGGCCTAGCGACACCTGATCAGCCTATCCTTTGGGT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATCTACGGATGGCCTAGCGACACCTGATCAGCCTATCCTTTGGGT  849

seq1  TCCGTGTGATACCCTTTCAAGTGGAGATCTGACCGGCTCCGAAGGCCTCG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGTGATACCCTTTCAAGTGGAGATCTGACCGGCTCCGAAGGCCTCG  899

seq1  GCACCCCGAAAGCCGCTGCCAGGCAAAGGCCAGAGGTTTTCCCTGTCTTG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCGAAAGCCGCTGCCAGGCAAAGGCCAGAGGTTTTCCCTGTCTTG  949

seq1  AGTCGCGGGTAGGCGACTAGGCAGTTTGGTCAAATCTATTACAATCAGAC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGCGGGTAGGCGACTAGGCAGTTTGGTCAAATCTATTACAATCAGAC  999

seq1  CTTCGCGTCTCAATCCGCACTTCTCTACAGTATTAGGTGTATTGTGGGGC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGCGTCTCAATCCGCACTTCTCTACAGTATTAGGTGTATTGTGGGGC  1049

seq1  TCTGGGGTGCTAAGTGTGAGGTGAAGCGAGGAGGGAAGGAAGGTGATAAG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGTGCTAAGTGTGAGGTGAAGCGAGGAGGGAAGGAAGGTGATAAG  1099

seq1  AATTC  1092
      |||||
seq2  AATTC  1104