BAC Information

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BAC

Clone NameB6Ng01-244B17
Chromosome2 (Build37)
Map Location 83,487,498 - 83,628,986
singlet/doubletdoublet
Overlap geneZc3h15, Itgav, Dnmt3l-ps1
Upstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077
Downstream geneD430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244B17.bB6Ng01-244B17.g
ACCGA053323GA053324
length1,1951,093
definitionB6Ng01-244B17.b B6Ng01-244B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,627,808 - 83,628,986)(83,487,498 - 83,488,568)
sequence
gaattcatcacagaatgttcggttacaacatctgaaaaactgtgttaact
gtggcaagcataacgtaaaactcacatggctgttcagtaagaactgtgca
tcagggttagttttataatgtaacgcttgactcaaaacacaaccaagaag
ctatgaagtgcattagctgtgaacccaagttctctgaaaaaaccacacgt
acttaacagtctgctaagagctgagctctgccaattatgcagaggtgtaa
tacttcagataatgagccagagttgttatagaacaatatgagtcctttct
aataactcttagctataaatctctgcatctgacttattttgccattgcta
gctaaaactattggaatccatcagaaaacctggtggctctctcccctcca
gcaaccaaggaatgggataaagatctgaattctgaagaagatgttaagga
tgacatgtgaaccttacagcagagattccgctgtcttttgtagctcacct
actcaatagcgcaccagcctccctttgtcctgtgtccgtaaaaacataca
caacacagcccagagtctgtgcttcagaggacgaggcctccagccagagt
cactcacattccttgaataaattcttctcttgccttccttaaagtgagac
tgtgattttatgccaacacggtaaaaggaacactcaggcagatacccaac
acagtaatcagaccaatattaatgtggctttaagctgcccaacctttcaa
cctttgctttccttcacagtgtaagggctgctgaatttcagttcgcccat
ccctgcctgctctgctgacaccactgttttcaaacttgtctagaaatctc
ttgtggtcactctttcctggtggcccggtatttacatcttgccggcgcca
ctttttatagagattgtgtcaccgaaacagtgcgtccctcacttgttttt
ttgtttctcttttggattacctgggaatgagctcatatataacctcctga
tttttcttcccaatttaacaagtttaaagcctcatctatgcttgtcccat
atattacagcttagggaacatacatcactgctaggtaataatgttatagc
cagcctatccatctctgttcaagaattacttgtggcttccagttattttt
tgttattacaagactttggtggcagtgatgattctcacttaaata

gaattccaggtcaaccttgggtgcagtacaaaatcctgtcttaaagaaca
aaagaaaaataagtataattcttgacttgggttgggggtgtgtttggatt
tagggcaagcagattaaaaaaaaaaaatatgtcctctgaggacatgcagc
tctgaagaatagtaatctagactgcagaaaggacccaggattgtaaagag
aactgagaaactattagttgctggtgaatttcttctgaggtacacagttg
attgcttgaagctgaatacttgcaaagtgtctctgtttcataaatagcca
acaaaatatattaggttgtgtcttcagagacaggactactgagttattgc
ggtgtcagcttctgcctaccctagggtcccaagtaataaaacctacttac
ctgagaagaacaccgtcagcgttggcttttttcctgcttcgtttttaata
cctttaaggagcggaagctggcctgtaaaaggagtaggattgcttaaggg
tcagaggagaaaggaggtcagggttgttaagactacaattaggtatgtgg
agagggaagcagtcctttccttacagcctcttctgagctccttttcaatc
gtcttcggaattcatccactgaaatacaccctttttccctgtaacttttg
aaaccttatacatttcagttattttgtagtttcggattcactctaacctc
cctttcctacctaatactttcccactcctaaacctgtgccaacttttagg
taaaattttttcccaagcccagggaaaggctttattgataatttaggttg
taaaccatccaacttttaagatgtactagtgttatttcagtatgttctgt
ttagaagactttgtaactgggggtgtagctcagttagaatgcatgcctag
ccacacatgaagcccccacgttacctctataggacggcaggaactgggtt
ggctgtgggaatggtttttctgtaattcttagcactgtggagatagaagc
taggaaatctaggttccagggtcattcttcagctattatatttcagttta
cggaacggcaatggggatccatggtggggggggccttgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_83627808_83628986
seq2: B6Ng01-244B17.b_45_1239 (reverse)

seq1  TATTTAAGT-AGAATCATCACTG-CAACAAAATCTTGTAATAACAAAAAC  48
      ||||||||| ||||||||||||| || |||| ||||||||||||||||| 
seq2  TATTTAAGTGAGAATCATCACTGCCACCAAAGTCTTGTAATAACAAAAAA  50

seq1  AAACTGGGAAACCACAAGTAA-TCTTTGACAGAAGAATGGATAAGCT-GC  96
       |||| |||| |||||||||| ||||  |||||   ||||||| ||| ||
seq2  TAACT-GGAAGCCACAAGTAATTCTTGAACAGA--GATGGATAGGCTGGC  97

seq1  TATAACA-TATTACCTAGCAGTGATGTATGT--CCT-AGCTGT-ATATAT  141
      ||||||| |||||||||||||||||||||||  ||| |||||| ||||||
seq2  TATAACATTATTACCTAGCAGTGATGTATGTTCCCTAAGCTGTAATATAT  147

seq1  GGAAC-AGCATAGATGAGGC-TTAAAC-TGTTAAA-TGGGAAG-AAAATC  186
      || || |||||||||||||| |||||| ||||||| ||||||| ||||||
seq2  GGGACAAGCATAGATGAGGCTTTAAACTTGTTAAATTGGGAAGAAAAATC  197

seq1  A-GAGGTTATATATGAGCTCATTCCCA-GTTATCCAAAGGAGAAAC-AAA  233
      | ||||||||||||||||||||||||| || ||||||| ||||||| |||
seq2  AGGAGGTTATATATGAGCTCATTCCCAGGTAATCCAAAAGAGAAACAAAA  247

seq1  AAACAAGTGAGGGACGCACTG-TTCGGTGACACAATCTCTATAAAAAGTG  282
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAACAAGTGAGGGACGCACTGTTTCGGTGACACAATCTCTATAAAAAGTG  297

seq1  GCGCCGGCAAGATGTAAATACC-GGCCACCAGGAAAGAGTGACCACAAGA  331
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCGCCGGCAAGATGTAAATACCGGGCCACCAGGAAAGAGTGACCACAAGA  347

seq1  GATTTCTAGACAAGTTTGAAAACAGTGGTGTCAGCAGAGCAGGCAGGGAT  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTAGACAAGTTTGAAAACAGTGGTGTCAGCAGAGCAGGCAGGGAT  397

seq1  GGGCGAACTGAAATTCAGCAGCCCTTACACTGTGAAGGAAAGCAAAGGTT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGAACTGAAATTCAGCAGCCCTTACACTGTGAAGGAAAGCAAAGGTT  447

seq1  GAAAGGTTGGGCAGCTTAAAGCCACATTAATATTGGTCTGATTACTGTGT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTTGGGCAGCTTAAAGCCACATTAATATTGGTCTGATTACTGTGT  497

seq1  TGGGTATCTGCCTGAGTGTTCCTTTTACCGTGTTGGCATAAAATCACAGT  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATCTGCCTGAGTGTTCCTTTTACCGTGTTGGCATAAAATCACAGT  547

seq1  CTCACTTTAAGGAAGGCAAGAGAAGAATTTATTCAAGGAATGTGAGTGAC  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTTAAGGAAGGCAAGAGAAGAATTTATTCAAGGAATGTGAGTGAC  597

seq1  TCTGGCTGGAGGCCTCGTCCTCTGAAGCACAGACTCTGGGCTGTGTTGTG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGGAGGCCTCGTCCTCTGAAGCACAGACTCTGGGCTGTGTTGTG  647

seq1  TATGTTTTTACGGACACAGGACAAAGGGAGGCTGGTGCGCTATTGAGTAG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTACGGACACAGGACAAAGGGAGGCTGGTGCGCTATTGAGTAG  697

seq1  GTGAGCTACAAAAGACAGCGGAATCTCTGCTGTAAGGTTCACATGTCATC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTACAAAAGACAGCGGAATCTCTGCTGTAAGGTTCACATGTCATC  747

seq1  CTTAACATCTTCTTCAGAATTCAGATCTTTATCCCATTCCTTGGTTGCTG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACATCTTCTTCAGAATTCAGATCTTTATCCCATTCCTTGGTTGCTG  797

seq1  GAGGGGAGAGAGCCACCAGGTTTTCTGATGGATTCCAATAGTTTTAGCTA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAGAGAGCCACCAGGTTTTCTGATGGATTCCAATAGTTTTAGCTA  847

seq1  GCAATGGCAAAATAAGTCAGATGCAGAGATTTATAGCTAAGAGTTATTAG  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGCAAAATAAGTCAGATGCAGAGATTTATAGCTAAGAGTTATTAG  897

seq1  AAAGGACTCATATTGTTCTATAACAACTCTGGCTCATTATCTGAAGTATT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACTCATATTGTTCTATAACAACTCTGGCTCATTATCTGAAGTATT  947

seq1  ACACCTCTGCATAATTGGCAGAGCTCAGCTCTTAGCAGACTGTTAAGTAC  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCTGCATAATTGGCAGAGCTCAGCTCTTAGCAGACTGTTAAGTAC  997

seq1  GTGTGGTTTTTTCAGAGAACTTGGGTTCACAGCTAATGCACTTCATAGCT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTTTTTCAGAGAACTTGGGTTCACAGCTAATGCACTTCATAGCT  1047

seq1  TCTTGGTTGTGTTTTGAGTCAAGCGTTACATTATAAAACTAACCCTGATG  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTGTGTTTTGAGTCAAGCGTTACATTATAAAACTAACCCTGATG  1097

seq1  CACAGTTCTTACTGAACAGCCATGTGAGTTTTACGTTATGCTTGCCACAG  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCTTACTGAACAGCCATGTGAGTTTTACGTTATGCTTGCCACAG  1147

seq1  TTAACACAGTTTTTCAGATGTTGTAACCGAACATTCTGTGATGAATTC  1179
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACAGTTTTTCAGATGTTGTAACCGAACATTCTGTGATGAATTC  1195


seq1: chr2_83487498_83488568
seq2: B6Ng01-244B17.g_66_1158

seq1  GAATTCCAGGTCAACCTTGGGTGCAGTACAAAATCCTGTCTTAAAGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAACCTTGGGTGCAGTACAAAATCCTGTCTTAAAGAACA  50

seq1  AAAGAAAAATAAGTATAATTCTTGACTTGGGTTGGGGGTGTGTTTGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAATAAGTATAATTCTTGACTTGGGTTGGGGGTGTGTTTGGATT  100

seq1  TAGGGCAAGCAGATTAAAAAAAAAAAATATGTCCTCTGAGGACATGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAAGCAGATTAAAAAAAAAAAATATGTCCTCTGAGGACATGCAGC  150

seq1  TCTGAAGAATAGTAATCTAGACTGCAGAAAGGACCCAGGATTGTAAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAATAGTAATCTAGACTGCAGAAAGGACCCAGGATTGTAAAGAG  200

seq1  AACTGAGAAACTATTAGTTGCTGGTGAATTTCTTCTGAGGTACACAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGAAACTATTAGTTGCTGGTGAATTTCTTCTGAGGTACACAGTTG  250

seq1  ATTGCTTGAAGCTGAATACTTGCAAAGTGTCTCTGTTTCATAAATAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTGAAGCTGAATACTTGCAAAGTGTCTCTGTTTCATAAATAGCCA  300

seq1  ACAAAATATATTAGGTTGTGTCTTCAGAGACAGGACTACTGAGTTATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATATATTAGGTTGTGTCTTCAGAGACAGGACTACTGAGTTATTGC  350

seq1  GGTGTCAGCTTCTGCCTACCCTAGGGTCCCAAGTAATAAAACCTACTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAGCTTCTGCCTACCCTAGGGTCCCAAGTAATAAAACCTACTTAC  400

seq1  CTGAGAAGAACACCGTCAGCGTTGGCTTTTTTCCTGCTTCGTTTTTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGAACACCGTCAGCGTTGGCTTTTTTCCTGCTTCGTTTTTAATA  450

seq1  CCTTTAAGGAGCGGAAGCTGGCCTGTAAAAGGAGTAGGATTGCTTAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAGGAGCGGAAGCTGGCCTGTAAAAGGAGTAGGATTGCTTAAGGG  500

seq1  TCAGAGGAGAAAGGAGGTCAGGGTTGTTAAGACTACAATTAGGTATGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGAGAAAGGAGGTCAGGGTTGTTAAGACTACAATTAGGTATGTGG  550

seq1  AGAGGGAAGCAGTCCTTTCCTTACAGCCTCTTCTGAGCTCCTTTTCAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAGCAGTCCTTTCCTTACAGCCTCTTCTGAGCTCCTTTTCAATC  600

seq1  GTCTTCGGAATTCATCCACTGAAATACACCCTTTTTCCCTGTAACTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCGGAATTCATCCACTGAAATACACCCTTTTTCCCTGTAACTTTTG  650

seq1  AAACCTTATACA-TTCAGTTATTTTGTAGTTTCGGATTCACTCTAACCTC  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAACCTTATACATTTCAGTTATTTTGTAGTTTCGGATTCACTCTAACCTC  700

seq1  CCTTTCCTACCTAATACTTTCCCACTCCTAAACCTGTGCCAACTTTTAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTACCTAATACTTTCCCACTCCTAAACCTGTGCCAACTTTTAGG  750

seq1  TAAAATTTTTTCCCAAGCCCAGGGAAAGGCTTTATTGATAATTTAGGTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTTTCCCAAGCCCAGGGAAAGGCTTTATTGATAATTTAGGTTG  800

seq1  TAAACCATCCAACTTTTAAGATGTACTAGTGTTATTTCAGTATGTTCTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATCCAACTTTTAAGATGTACTAGTGTTATTTCAGTATGTTCTGT  850

seq1  TTAGAAGACTTTGTAACTGGGGGTGTAGCTCAGTTAGAATGCATGCCTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGACTTTGTAACTGGGGGTGTAGCTCAGTTAGAATGCATGCCTAG  900

seq1  -CACACATGAAG-CCCCACGTTA-CTCTATAGGACGGCAGGAACTGGG-T  945
       ||||||||||| |||||||||| |||||||||||||||||||||||| |
seq2  CCACACATGAAGCCCCCACGTTACCTCTATAGGACGGCAGGAACTGGGTT  950

seq1  GGCTGTGGGAATG---TTTCTGTAATTC-TAGCACTGTGGAGATAGAAGC  991
      |||||||||||||   |||||||||||| |||||||||||||||||||||
seq2  GGCTGTGGGAATGGTTTTTCTGTAATTCTTAGCACTGTGGAGATAGAAGC  1000

seq1  AAGGAAATC-AGGTT-CAAGGTCA-TCTTCAGCTA-TATA-TTCAGTTTA  1036
       |||||||| ||||| || ||||| |||||||||| |||| |||||||||
seq2  TAGGAAATCTAGGTTCCAGGGTCATTCTTCAGCTATTATATTTCAGTTTA  1050

seq1  AGG-ACAGCA--TGGGATCCAT-GTGGGGG----CTTGGGGGG  1071
       || || |||   ||||||||| |||||||    |||||||||
seq2  CGGAACGGCAATGGGGATCCATGGTGGGGGGGGCCTTGGGGGG  1093


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