BAC Information

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BAC

Clone NameB6Ng01-244B19
Chromosome2 (Build37)
Map Location 165,139,503 - 165,270,676
singlet/doubletdoublet
Overlap geneElmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3
Upstream geneSvs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2
Downstream gene2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3, Sulf2, LOC670775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244B19.bB6Ng01-244B19.g
ACCGA053327GA053328
length1,0741,122
definitionB6Ng01-244B19.b B6Ng01-244B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,139,503 - 165,140,576)(165,269,538 - 165,270,676)
sequence
gaattcatgatcctcagcctctgcctctcaagtgctgggatcccaggcct
ggtctactgttcctgtcgcctgcttctcacttcctttccagctgcgtcct
ttactcgccttgatgggctgcttatacagaatgggagggtccccaaggtc
ccgcccctctgctcctacccctggcactcattcaccaaggttatctctta
aggcttcctcgtgtctgtcaatcccgccatcccactgcctctgctgagac
ctcatccttaccagtctctgagagatcactcttccaccagtctctcttgc
ttgcctgtgaatgtggcctttctaacactcaataggacgcacagggcaca
tttctcatggaatctatttctttctgagtaaagtctaagcccacgcatgg
gcggccatgcgagtgccttcaggactggtctcccccacatacctcacagc
tctggcttctacactagaaaggaaccacatttcttcttcctccagtcacc
cacagcgttagcctctatgctcagggtccccatctctgggaaagcattct
ggaagcccctacgctggggaaggtggtccctctcagacaccctacagcca
ggcggctgtctgctgcccctgcttgtgagctgccagctgggctgtgaggg
cgagggacttcttctcaatgtagggcagtgtccatgccaccacaggcgct
cctgtgccaggacgactggaatacctaccggggagacggccagttgtaag
attgtcccgttcttaatgtcatttcgggtctgggtagcaaagaataaaac
agaacaaaacaaaaagacatatttaaacagtgcatggaggtgacccagga
aggactggtggccattttcacagtgactttccctcgtctgcagaggattc
agctagcagtgaactgaagaaatcttacagggggaggggtttggctttga
acattctgcctgtttgttcttgtctggtcccctagcattgcttggagagc
aggtaccagccatgcccacccactgcatggggcacagttagggaggattt
atggtaaggggatgtgcctaggtg
gaattcttttgacagcaatagaacacatgtctgccttcaagtggcttaaa
aaaatgggaagttgttttcttcagacatgatgaaatcaggggaaggcatc
gtggggccactttggaggcacaaggacatcccgagacttttcattggcaa
cccagtgactcacacacctccaccccatggtgacacagtggctgccatat
cacctctactttaaagtctcccactttgtattgatatctacatactttta
agagaggtctaaagccatccatgtctgggccaggactgctatcccacctc
ctgtgttctttctgcctcacacacagaccctgcacagcacactgagctga
ggaaagccatccatgtctgggccaggactgccatcccaccttccgcgttc
tttctgcctcacactcagaccctgcacagcacactgagctagagacagct
gagcttcctgccttccctgtgtattaggtagtcaggtgtctaagtctggt
ccgggagaatttagtggaaatatgggggctcttgtggttctgcccttcac
ggtctctaacccatgttgagtgggtgtggtgggccacgtggtgagagtgg
gagacgccacctgggataagaggtgaaagccacactttgacaaaagtggc
tgaccactcccacagaggtgccattcaggccaataaatgcaacattagcc
ttgaaaccatgctaacggtgttctttgaaaaggtgtgtaagcatgcttgt
tccagaacagacttctcctacaagtatgaaggcctgagttccatcctcag
agcccatgtttaaaagccagctgaggcggcacgcgcttgtaatcctagct
ggggaggtgaaggcaaatggatccctggggcttgctggccagtcagccag
attgtcgaatcctaaggctagtggcccttgtttgccaccccaacccccca
aaccacagatgcagcatgccttggtcccagactgatggcagaggcaagca
catctctgtgagtttaggtcaacttagggttatatagactcagcatgtca
ctacattatgtcaaaagaaaaaaaaagatgacttctggagactatcttga
ggttcactctgggtttcatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_165139503_165140576
seq2: B6Ng01-244B19.b_46_1119

seq1  GAATTCATGATCCTCAGCCTCTGCCTCTCAAGTGCTGGGATCCCAGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATCCTCAGCCTCTGCCTCTCAAGTGCTGGGATCCCAGGCCT  50

seq1  GGTCTACTGTTCCTGTCGCCTGCTTCTCACTTCCTTTCCAGCTGCGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACTGTTCCTGTCGCCTGCTTCTCACTTCCTTTCCAGCTGCGTCCT  100

seq1  TTACTCGCCTTGATGGGCTGCTTATACAGAATGGGAGGGTCCCCAAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCGCCTTGATGGGCTGCTTATACAGAATGGGAGGGTCCCCAAGGTC  150

seq1  CCGCCCCTCTGCTCCTACCCCTGGCACTCATTCACCAAGGTTATCTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCTCTGCTCCTACCCCTGGCACTCATTCACCAAGGTTATCTCTTA  200

seq1  AGGCTTCCTCGTGTCTGTCAATCCCGCCATCCCACTGCCTCTGCTGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCCTCGTGTCTGTCAATCCCGCCATCCCACTGCCTCTGCTGAGAC  250

seq1  CTCATCCTTACCAGTCTCTGAGAGATCACTCTTCCACCAGTCTCTCTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCTTACCAGTCTCTGAGAGATCACTCTTCCACCAGTCTCTCTTGC  300

seq1  TTGCCTGTGAATGTGGCCTTTCTAACACTCAATAGGACGCACAGGGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGTGAATGTGGCCTTTCTAACACTCAATAGGACGCACAGGGCACA  350

seq1  TTTCTCATGGAATCTATTTCTTTCTGAGTAAAGTCTAAGCCCACGCATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATGGAATCTATTTCTTTCTGAGTAAAGTCTAAGCCCACGCATGG  400

seq1  GCGGCCATGCGAGTGCCTTCAGGACTGGTCTCCCCCACATACCTCACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCCATGCGAGTGCCTTCAGGACTGGTCTCCCCCACATACCTCACAGC  450

seq1  TCTGGCTTCTACACTAGAAAGGAACCACATTTCTTCTTCCTCCAGTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTCTACACTAGAAAGGAACCACATTTCTTCTTCCTCCAGTCACC  500

seq1  CACAGCGTTAGCCTCTATGCTCAGGGTCCCCATCTCTGGGAAAGCATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCGTTAGCCTCTATGCTCAGGGTCCCCATCTCTGGGAAAGCATTCT  550

seq1  GGAAGCCCCTACGCTGGGGAAGGTGGTCCCTCTCAGACACCCTACAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCCCTACGCTGGGGAAGGTGGTCCCTCTCAGACACCCTACAGCCA  600

seq1  GGCGGCTGTCTGCTGCCCCTGCTTGTGAGCTGCCAGCTGGGCTGTGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCTGTCTGCTGCCCCTGCTTGTGAGCTGCCAGCTGGGCTGTGAGGG  650

seq1  CGAGGGACTTCTTCTCAATGTAGGGCAGTGTCCATGCCACCACAGGCGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGACTTCTTCTCAATGTAGGGCAGTGTCCATGCCACCACAGGCGCT  700

seq1  CCTGTGCCAGGACGACTGGAATACCTACCGGGGAGACGGCCAGTTGTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCCAGGACGACTGGAATACCTACCGGGGAGACGGCCAGTTGTAAG  750

seq1  ATTGTCCCGTTCTTAATGTCATTTCGGGTCTGGGTAGCAAAGAATAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCCGTTCTTAATGTCATTTCGGGTCTGGGTAGCAAAGAATAAAAC  800

seq1  AGAACAAAACAAAAAGACAATATTAAAACAGTGCATGGAGGTGAACCAGG  850
      |||||||||||||||||| ||||| ||||||||||||||||||| |||||
seq2  AGAACAAAACAAAAAGAC-ATATTTAAACAGTGCATGGAGGTGACCCAGG  849

seq1  AAGGACTGGTGGCCATTTTCACAGTGACTTT-CCTCGTCTGCAGAGGATT  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGGACTGGTGGCCATTTTCACAGTGACTTTCCCTCGTCTGCAGAGGATT  899

seq1  CAGCTAGCAGTGAACTGAAGAAATC-TACAGGGGGAGGGGTTT-GCTTTG  947
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  CAGCTAGCAGTGAACTGAAGAAATCTTACAGGGGGAGGGGTTTGGCTTTG  949

seq1  AACATTTCTGCCTG-TTGTTCTTGTCTGGTCCCCTAAGCATTGC-TGGAG  995
      |||| ||||||||| |||||||||||||||||||| |||||||| |||||
seq2  AACA-TTCTGCCTGTTTGTTCTTGTCTGGTCCCCT-AGCATTGCTTGGAG  997

seq1  AGCAGGTA-CAGCCATGGCCCACCCACTGCATGGGGCACAGTTTAGGGAG  1044
      |||||||| ||||||| |||||||||||||||||||||||| ||||||||
seq2  AGCAGGTACCAGCCAT-GCCCACCCACTGCATGGGGCACAG-TTAGGGAG  1045

seq1  GATTTTAATGTGAGGGGATGTGCCTAGGTG  1074
      || ||||  || ||||||||||||||||||
seq2  GA-TTTATGGTAAGGGGATGTGCCTAGGTG  1074

seq1: chr2_165269538_165270676
seq2: B6Ng01-244B19.g_66_1187 (reverse)

seq1  TGCATGGGAAAACCAGAAGTGAACCTC-AGATAGTCTTCAGGAGTCATCC  49
      |||||  |||| |||| |||||||||| ||||||||| ||| |||||| |
seq2  TGCAT--GAAACCCAG-AGTGAACCTCAAGATAGTCTCCAGAAGTCAT-C  46

seq1  TTTTTTTTTCTTTTTTGGACAT-ATGTAGTGACAATGGCCTGGAAGTCCT  98
      ||||||||||||||   ||||| |||||||||| |||  |||  ||||  
seq2  TTTTTTTTTCTTTT---GACATAATGTAGTGAC-ATG--CTG--AGTCTA  88

seq1  TATATACCCTAGGTTGACCTTAAACTCACAGAGATGTGCTTGCCTCTGCC  148
      |||| |||||| ||||||| ||||||||||||||||||||||||||||||
seq2  TATA-ACCCTAAGTTGACC-TAAACTCACAGAGATGTGCTTGCCTCTGCC  136

seq1  ATTCAAGTCTTGGGACCAAAGGCATGCCTGCATCTTGTGGTTTTGGGGGG  198
      ||   |||| ||||||| |||||||| ||||||| ||||| |||||||||
seq2  AT--CAGTC-TGGGACC-AAGGCATG-CTGCATC-TGTGG-TTTGGGGGG  179

seq1  TTGGGGTGGCAAACAA-GGCCACTAGCC-TAGGATTCGACAATCTGGCTG  246
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  TTGGGGTGGCAAACAAGGGCCACTAGCCTTAGGATTCGACAATCTGGCTG  229

seq1  ACTGGCCAGCAAGCCCCAGGGATCCATTTGCCTTCACCTCCCCAGCTAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCAGCAAGCCCCAGGGATCCATTTGCCTTCACCTCCCCAGCTAGG  279

seq1  ATTACAAGCGCGTGCCGCCTCAGCTGGCTTTTAAACATGGGCTCTGAGGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAGCGCGTGCCGCCTCAGCTGGCTTTTAAACATGGGCTCTGAGGA  329

seq1  TGGAACTCAGGCCTTCATACTTGTAGGAGAAGTCTGTTCTGGAACAAGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCAGGCCTTCATACTTGTAGGAGAAGTCTGTTCTGGAACAAGCA  379

seq1  TGCTTACACACCTTTTCAAAGAACACCGTTAGCATGGTTTCAAGGCTAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACACACCTTTTCAAAGAACACCGTTAGCATGGTTTCAAGGCTAAT  429

seq1  GTTGCATTTATTGGCCTGAATGGCACCTCTGTGGGAGTGGTCAGCCACTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATTTATTGGCCTGAATGGCACCTCTGTGGGAGTGGTCAGCCACTT  479

seq1  TTGTCAAAGTGTGGCTTTCACCTCTTATCCCAGGTGGCGTCTCCCACTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAAGTGTGGCTTTCACCTCTTATCCCAGGTGGCGTCTCCCACTCT  529

seq1  CACCACGTGGCCCACCACACCCACTCAACATGGGTTAGAGACCGTGAAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGTGGCCCACCACACCCACTCAACATGGGTTAGAGACCGTGAAGG  579

seq1  GCAGAACCACAAGAGCCCCCATATTTCCACTAAATTCTCCCGGACCAGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACCACAAGAGCCCCCATATTTCCACTAAATTCTCCCGGACCAGAC  629

seq1  TTAGACACCTGACTACCTAATACACAGGGAAGGCAGGAAGCTCAGCTGTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACACCTGACTACCTAATACACAGGGAAGGCAGGAAGCTCAGCTGTC  679

seq1  TCTAGCTCAGTGTGCTGTGCAGGGTCTGAGTGTGAGGCAGAAAGAACGCG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTCAGTGTGCTGTGCAGGGTCTGAGTGTGAGGCAGAAAGAACGCG  729

seq1  GAAGGTGGGATGGCAGTCCTGGCCCAGACATGGATGGCTTTCCTCAGCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGGATGGCAGTCCTGGCCCAGACATGGATGGCTTTCCTCAGCTC  779

seq1  AGTGTGCTGTGCAGGGTCTGTGTGTGAGGCAGAAAGAACACAGGAGGTGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTGTGCAGGGTCTGTGTGTGAGGCAGAAAGAACACAGGAGGTGG  829

seq1  GATAGCAGTCCTGGCCCAGACATGGATGGCTTTAGACCTCTCTTAAAAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAGTCCTGGCCCAGACATGGATGGCTTTAGACCTCTCTTAAAAGT  879

seq1  ATGTAGATATCAATACAAAGTGGGAGACTTTAAAGTAGAGGTGATATGGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGATATCAATACAAAGTGGGAGACTTTAAAGTAGAGGTGATATGGC  929

seq1  AGCCACTGTGTCACCATGGGGTGGAGGTGTGTGAGTCACTGGGTTGCCAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGTGTCACCATGGGGTGGAGGTGTGTGAGTCACTGGGTTGCCAA  979

seq1  TGAAAAGTCTCGGGATGTCCTTGTGCCTCCAAAGTGGCCCCACGATGCCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTCTCGGGATGTCCTTGTGCCTCCAAAGTGGCCCCACGATGCCT  1029

seq1  TCCCCTGATTTCATCATGTCTGAAGAAAACAACTTCCCATTTTTTTAAGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGATTTCATCATGTCTGAAGAAAACAACTTCCCATTTTTTTAAGC  1079

seq1  CACTTGAAGGCAGACATGTGTTCTATTGCTGTCAAAAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAAGGCAGACATGTGTTCTATTGCTGTCAAAAGAATTC  1122