BAC Information

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BAC

Clone NameB6Ng01-244E13
Chromosome2 (Build37)
Map Location 85,958,547 - 86,105,706
singlet/doubletdoublet
Overlap geneLOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049
Upstream geneAgtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037
Downstream geneOlfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244E13.bB6Ng01-244E13.g
ACCGA053456GA053457
length1,1271,151
definitionB6Ng01-244E13.b B6Ng01-244E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,958,547 - 85,959,671)(86,104,540 - 86,105,706)
sequence
gaattcacactctgtgatgaatggaggagatacttgtgatcagacaagat
gcttgaaatcatcttatgaccatcatggtttttcattaaaatgctggtaa
ccatatttacaaagcaaatgattttaatctttggtctttgcttctattag
cagttggaaataaaataaactatctttttgtttttctttcttttttacaa
aagaaatcatcaaggcagcaaatcatcaaggcagcaaatctaagagctat
aactagagtcatacaccaccatatctgaaaacttttagtacttgaatatg
gatttaaattttaggtttttgaaatctacagtgaaataatcaattgaact
attaccatttactggaagactgtatttagtactaataaaggcttcagaga
aataagtctcaacctggggctttccaacgtcttttatgtccactaatatg
atatgtatgtgtttgccttatgtgtagagctagtgagagttggagtaggg
attgaggctgaggacctgtgatatatagtatacataacttgtagctcagt
tgctatgccttgatgagaagaaaaggaagaaagaacacttaaagatgtta
gcatagagagacgctagcagagcccctaaggaatacctgtaatactaagc
agaaaatatagcaaaaagtgtttttctgagtcattactttctcttttctt
taattagtaaataacctttctgtggaaagcacaactgccatgtcagattc
taaaatctgtaaaagcctaaagagtcaaactcattaaacaatcgatttaa
aaggaaatttaatttcccctagtaaatatatttcagaaaataaattggca
aaaagattatgtagagaccagaagaggacaaagtaaagaaaactaataaa
tattgaaaaattagttgggattgttcttgtttttagttaaggtaaattat
ataaaagatgatcaatatttcctcaactaataacagtttagtaaacactt
aaattttctgtaataatttctgctaaaaaggtattatgattataagaatg
cttattatatacatatgtacctatacataggaaagagaaaaggagaattt
cctaggtggttaaacattttcttacta
gaattcagtcagttgggagtcagtgcagtgagtgcaatgcaatgcaggat
agttagatttgtgcagttaagtgcatgtcagcagaagcaattgaagctgg
agaataagaagaaggaaccagaagattaaaacaaattgccagagttaggt
taatgccaagcagagcaattcagagagaagctgagagaagacacattgag
ttagtcagcttggagaggaatattagccaaagcccctgaattgaaccagc
ctgatggaatttagaaagaactggaaagggtgagcttattcatcagtaaa
ccctgagatgacagttacttcaggtgattaaaattactcctcaagctaaa
caatttccaactgcttaaaacatggtgcccaactccccttttcatgctag
cattttatcaatcttagtgctagtaaccaggcgaacccatggacagcaag
gggcaagttcacagcaatcaggcttctttacaacaagctctggccgaccc
agggttaagacatatcatctctaggcaacagtgtcgtccctgtgtcatat
ccctttatgcacgcatcctcctctctctctactctctcccagaggctgcc
tctgacctctgaccgccccctgaccccaaacatcccatgtgagatcagct
gcatgatgtgatttgtttgggaccacgctgtctacttctagcattggtgc
tctgagacttggtgtttgcaatctccctacatagatcgtgagcatagagg
agagctctgtgagtgcagtacaggcaggcaatgactggccatcactatgt
gggttaaacccgcaggtctgaacctcatcctggtatgtctgcctgctaca
caagctcactttctgctcatgggatcacttctttccatccaaacagcacc
aatttgggtaagcttatacagagtccctggtcccaagggagggctgggtt
atccatggtcttttatgactgctctgactctcattctctcatgggtgaag
ttcttcttctctcttttctgagtggtcatactgctgtgaatctggctgga
tgacattctcatgcaccagcactggcctgagctaacctccttaggtcatc
atatgaataacctgtgataagccttgctgtcattagctactggcattgtc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_85958547_85959671
seq2: B6Ng01-244E13.b_46_1172

seq1  GAATTCACACTCTGTGATGAATGGAGGAGATACTTGTGATCAGACAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTCTGTGATGAATGGAGGAGATACTTGTGATCAGACAAGAT  50

seq1  GCTTGAAATCATCTTATGACCATCATGGTTTTTCATTAAAATGCTGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAATCATCTTATGACCATCATGGTTTTTCATTAAAATGCTGGTAA  100

seq1  CCATATTTACAAAGCAAATGATTTTAATCTTTGGTCTTTGCTTCTATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTACAAAGCAAATGATTTTAATCTTTGGTCTTTGCTTCTATTAG  150

seq1  CAGTTGGAAATAAAATAAACTATCTTTTTGTTTTTCTTTCTTTTTTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGAAATAAAATAAACTATCTTTTTGTTTTTCTTTCTTTTTTACAA  200

seq1  AAGAAATCATCAAGGCAGCAAATCATCAAGGCAGCAAATCTAAGAGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCATCAAGGCAGCAAATCATCAAGGCAGCAAATCTAAGAGCTAT  250

seq1  AACTAGAGTCATACACCACCATATCTGAAAACTTTTAGTACTTGAATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAGTCATACACCACCATATCTGAAAACTTTTAGTACTTGAATATG  300

seq1  GATTTAAATTTTAGGTTTTTGAAATCTACAGTGAAATAATCAATTGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAATTTTAGGTTTTTGAAATCTACAGTGAAATAATCAATTGAACT  350

seq1  ATTACCATTTACTGGAAGACTGTATTTAGTACTAATAAAGGCTTCAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCATTTACTGGAAGACTGTATTTAGTACTAATAAAGGCTTCAGAGA  400

seq1  AATAAGTCTCAACCTGGGGCTTTCCAACGTCTTTTATGTCCACTAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTCTCAACCTGGGGCTTTCCAACGTCTTTTATGTCCACTAATATG  450

seq1  ATATGTATGTGTTTGCCTTATGTGTAGAGCTAGTGAGAGTTGGAGTAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATGTGTTTGCCTTATGTGTAGAGCTAGTGAGAGTTGGAGTAGGG  500

seq1  ATTGAGGCTGAGGACCTGTGATATATAGTATACATAACTTGTAGCTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGCTGAGGACCTGTGATATATAGTATACATAACTTGTAGCTCAGT  550

seq1  TGCTATGCCTTGATGAGAAGAAAAGGAAGAAAGAACACTTAAAGATGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGCCTTGATGAGAAGAAAAGGAAGAAAGAACACTTAAAGATGTTA  600

seq1  GCATAGAGAGACGCTAGCAGAGCCCCTAAGGAATACCTGTAATACTAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAGAGACGCTAGCAGAGCCCCTAAGGAATACCTGTAATACTAAGC  650

seq1  AGAAAATATAGCAAAAAGTGTTTTTCTGAGTCATTACTTTCTCTTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATAGCAAAAAGTGTTTTTCTGAGTCATTACTTTCTCTTTTCTT  700

seq1  TAATTAGTAAATAACCTTTCTGTGGAAAGCACAACTGCCATGTCAGATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGTAAATAACCTTTCTGTGGAAAGCACAACTGCCATGTCAGATTC  750

seq1  TAAAATCTGTAAAAGCCTAAAGAGTCAAACTCATTAAACAATCGATTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTGTAAAAGCCTAAAGAGTCAAACTCATTAAACAATCGATTTAA  800

seq1  AAGGAAATTTAATTTCCCCTAGTAAATATATTTCAGAAAATAAATTGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATTTAATTTCCCCTAGTAAATATATTTCAGAAAATAAATTGGCA  850

seq1  AAAAGATTATGTAGAGACCAGAAGAGGACAAAGTAAAGAAAACTAATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTATGTAGAGACCAGAAGAGGACAAAGTAAAGAAAACTAATAAA  900

seq1  TATTGAAAAATTAGTTGGATTTGTTCTTGTTTTTAGTTAAAGGTAAATTA  950
      ||||||||||||||||||  |||||||||||||||||| |||||||||| 
seq2  TATTGAAAAATTAGTTGGGATTGTTCTTGTTTTTAGTT-AAGGTAAATT-  948

seq1  ATATAAAAGATGATCAATATTTCCTCAACTAAT-ACAGTTTAGTAAACAC  999
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATATAAAAGATGATCAATATTTCCTCAACTAATAACAGTTTAGTAAACAC  998

seq1  TTAAATTTTCTGTTAATAATTTCTGCTAAAAAGGTAATTATGATT-TATA  1048
      |||||||||||| |||||||||||||||||||||| ||||||||| ||  
seq2  TTAAATTTTCTG-TAATAATTTCTGCTAAAAAGGT-ATTATGATTATAAG  1046

seq1  GATGCTTA-TATATACATATGTACCTATACATAGGAAAGAGGAAAAGAGA  1097
       ||||||| |||||||||||||||||||||||||||||||| ||| ||||
seq2  AATGCTTATTATATACATATGTACCTATACATAGGAAAGAGAAAAGGAGA  1096

seq1  ATTT-CTA-GTGG-TAAACATTTTCTTACTA  1125
      |||| ||| |||| |||||||||||||||||
seq2  ATTTCCTAGGTGGTTAAACATTTTCTTACTA  1127

seq1: chr2_86104540_86105706
seq2: B6Ng01-244E13.g_65_1215 (reverse)

seq1  GGACAAATGCAGTAGCTAGAAATGACAGCCAGGCCTTATCACCAGGTTA-  49
      ||||||   ||||||||   ||||||||| ||| ||||||| ||||||| 
seq2  GGACAATGCCAGTAGCT---AATGACAGCAAGG-CTTATCA-CAGGTTAT  45

seq1  TCATATGATGAACTAGGGAGTTTAGCTCAGGCCAGTGCCTGGGTGCCAAT  99
      ||||||||||| ||| |||| |||||||||||||||||   |||||  ||
seq2  TCATATGATGACCTAAGGAGGTTAGCTCAGGCCAGTGC--TGGTGC--AT  91

seq1  GAGAATGGTTCATCCAGGCCCAAGATTTCACAGCAGTATGAACCAACTCA  149
      |||||||  ||||||||   | ||| |||||||||||||||  | |||||
seq2  GAGAATG--TCATCCAG---CCAGA-TTCACAGCAGTATGA--CCACTCA  133

seq1  GAAAAGAGAG-AGAAGAACCTCACCCAATGAGGAGAATGAGGAGTCAGAG  198
      |||||||||| |||||||| |||||| |||| |||||||| |||||||||
seq2  GAAAAGAGAGAAGAAGAACTTCACCC-ATGA-GAGAATGA-GAGTCAGAG  180

seq1  CAGTCAT-AAAGACCATGGATAAACCAGCCCTCCCTTGGGACCAGGGACT  247
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGTCATAAAAGACCATGGATAACCCAGCCCTCCCTTGGGACCAGGGACT  230

seq1  CTGTATAAGCTTA-CCAAATTGGTGCTGTTTGGATGGAAAGAAGTGATCC  296
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGTATAAGCTTACCCAAATTGGTGCTGTTTGGATGGAAAGAAGTGATCC  280

seq1  CATGAGCAGAAAGTGAGCTTGTGTAGCAGGCAGACATACCAGGATGAGGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCAGAAAGTGAGCTTGTGTAGCAGGCAGACATACCAGGATGAGGT  330

seq1  TCAGACCTGCGGGTTTAACCCACATAGTGATGGCCAGTCATTGCCTGCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCTGCGGGTTTAACCCACATAGTGATGGCCAGTCATTGCCTGCCT  380

seq1  GTACTGCACTCACAGAGCTCTCCTCTATGCTCACGATCTATGTAGGGAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCACTCACAGAGCTCTCCTCTATGCTCACGATCTATGTAGGGAGA  430

seq1  TTGCAAACACCAAGTCTCAGAGCACCAATGCTAGAAGTAGACAGCGTGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAACACCAAGTCTCAGAGCACCAATGCTAGAAGTAGACAGCGTGGT  480

seq1  CCCAAACAAATCACATCATGCAGCTGATCTCACATGGGATGTTTGGGGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACAAATCACATCATGCAGCTGATCTCACATGGGATGTTTGGGGTC  530

seq1  AGGGGGCGGTCAGAGGTCAGAGGCAGCCTCTGGGAGAGAGTAGAGAGAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCGGTCAGAGGTCAGAGGCAGCCTCTGGGAGAGAGTAGAGAGAGA  580

seq1  GGAGGATGCGTGCATAAAGGGATATGACACAGGGACGACACTGTTGCCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGCGTGCATAAAGGGATATGACACAGGGACGACACTGTTGCCTA  630

seq1  GAGATGATATGTCTTAACCCTGGGTCGGCCAGAGCTTGTTGTAAAGAAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGATATGTCTTAACCCTGGGTCGGCCAGAGCTTGTTGTAAAGAAGC  680

seq1  CTGATTGCTGTGAACTTGCCCCTTGCTGTCCATGGGTTCGCCTGGTTACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGCTGTGAACTTGCCCCTTGCTGTCCATGGGTTCGCCTGGTTACT  730

seq1  AGCACTAAGATTGATAAAATGCTAGCATGAAAAGGGGAGTTGGGCACCAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAAGATTGATAAAATGCTAGCATGAAAAGGGGAGTTGGGCACCAT  780

seq1  GTTTTAAGCAGTTGGAAATTGTTTAGCTTGAGGAGTAATTTTAATCACCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAGCAGTTGGAAATTGTTTAGCTTGAGGAGTAATTTTAATCACCT  830

seq1  GAAGTAACTGTCATCTCAGGGTTTACTGATGAATAAGCTCACCCTTTCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAACTGTCATCTCAGGGTTTACTGATGAATAAGCTCACCCTTTCCA  880

seq1  GTTCTTTCTAAATTCCATCAGGCTGGTTCAATTCAGGGGCTTTGGCTAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCTAAATTCCATCAGGCTGGTTCAATTCAGGGGCTTTGGCTAAT  930

seq1  ATTCCTCTCCAAGCTGACTAACTCAATGTGTCTTCTCTCAGCTTCTCTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTCCAAGCTGACTAACTCAATGTGTCTTCTCTCAGCTTCTCTCT  980

seq1  GAATTGCTCTGCTTGGCATTAACCTAACTCTGGCAATTTGTTTTAATCTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCTCTGCTTGGCATTAACCTAACTCTGGCAATTTGTTTTAATCTT  1030

seq1  CTGGTTCCTTCTTCTTATTCTCCAGCTTCAATTGCTTCTGCTGACATGCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCCTTCTTCTTATTCTCCAGCTTCAATTGCTTCTGCTGACATGCA  1080

seq1  CTTAACTGCACAAATCTAACTATCCTGCATTGCATTGCACTCACTGCACT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGCACAAATCTAACTATCCTGCATTGCATTGCACTCACTGCACT  1130

seq1  GACTCCCAACTGACTGAATTC  1167
      |||||||||||||||||||||
seq2  GACTCCCAACTGACTGAATTC  1151