BAC Information

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BAC

Clone NameB6Ng01-244J24
Chromosome2 (Build37)
Map Location 72,408,774 - 72,533,237
singlet/doubletdoublet
Overlap geneLOC383712, LOC635960
Upstream geneGm1631, Itga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7
Downstream geneLOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244J24.bB6Ng01-244J24.g
ACCGA053712GA053713
length1,140798
definitionB6Ng01-244J24.b B6Ng01-244J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,532,121 - 72,533,237)(72,408,774 - 72,409,565)
sequence
gaattctgtccaaaagcttacacaagaggaaaaaaaaaggatacttgact
gtttacacaaactgtagagcagtgaatataagaggaggaaaggaaggact
aactactaacacaggggctggaagccgggcatggtggtgcttgcctttag
tcccagtacttgggaggcagagacagatggattgctgtgagttggaggcc
agcctggtctactaagtgagtgccaggacagccagggctgttacacagag
aaactgtgtctcaaaaaacaaagcagaatacaaacaacaacaacaacaca
cacacatacacaaaatcatagctagaaagggctttcttgatggtagactc
ctgaggaggtataaggcacagacagtaaaagacccaagttctggggtgtg
tttatttcctcttctttttcccctcccccatttcctcttcctcctcctct
ccctctttctctccccgctttttcttccctccaaaaacctcagaccctgc
atcctgaggaccttacctaatcctaatctccaccaaaatgtgaacccaca
tggtgaatgacactctcaccctctcagtgcctcacaatgaggactaagca
ttaacacgcgtaacctttgcggccacactcaaaccacaggatcaggatat
gcgaattggaaccaaacacatagctgggcatggcgcacgcctgtgatccc
agaattcagttagaagccaaagagaatgtaggtttggttcatattctgct
atagagggagttcaagaccttcccaagagaccagaatgatgacttaaaat
gatgaattaagtaaagtttgaaataagttaaataaagacacaaggaatta
gaagctcctaaacgtgtccccatgctgttagagttagatactacaggcta
ataagcatttgacagaagggtgagtcaccttatatttacttgtcgagcaa
tggaagcttcccagaaacaaaggaataattcgttcagagaataaaatgga
agcatttccatgaaagttttctttccaaaccatataggaaatccggaggt
gtttggaaccttcctcctaggtcaccttactggtaagcggaaattgcatg
gaattcagaagagaccaggaagatctggcaacttttcccc
gaattcttatatggatagaatcctcagagccagcaggatgcaggtcatca
cccttacttgcatcagcaaaggggtagaaagagtagagatactggatagt
ggacatatgatgcaattcctaggcggctgcgggagaaggtgagcgggggt
gggagggatagagcatcgggaagcgaggggctcaaggaggaggcagctga
gtccttgatggtggctcagtgactgggcatgtgccttctttgggggaaat
gtctgtctaggcctatttgccatgttaagactggattcttatgattttga
tcctgaagcctgcagctccttaaaaggaccaccccatgtcaaatgtatca
cttgtaaatagtttctcccatttttgtaagttgtctcttcactctgctga
ttgattgtgtcttttgagctctagaagaagcctattagtttgataagtct
tgtctactttagcctttcctacctatgcatttggtgtgatattaaaaaat
atccttatccagatcggtgctggggggcttttctagaagaggagcattta
gcatcacccagctctactttcttgccagcacacgcatgcccaaggtggtg
gaaaaacagatattcaaagtcatttccttgaaagagcttgacccatagga
acaggactgtttgagcaaagctacacaagttacttcagtgattattctat
agaagctgagttccaagcaaaaggccagatgctgcttggaaagagaaccc
ttgctatgaaaagaacaagcgtgtgaacagattgggatcagggtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_72532121_72533237
seq2: B6Ng01-244J24.b_46_1185 (reverse)

seq1  GGGGGAAAGTTG-CAGATCTTCCTGGTTCTC-TCTGAATTCCATGCAATT  48
      |||| ||||||| ||||||||||||| |||| ||||||||||||||||||
seq2  GGGGAAAAGTTGCCAGATCTTCCTGG-TCTCTTCTGAATTCCATGCAATT  49

seq1  TCCGCTTTACAGATAGGTGA-CTA-GAGGAAGGTCCCAAACAC--TCGGA  94
      |||||||  |||  |||||| ||| ||||||||| ||||||||   ||||
seq2  TCCGCTTACCAGTAAGGTGACCTAGGAGGAAGGTTCCAAACACCTCCGGA  99

seq1  ATTTCTATAT-GTTTG--AAGAAA--CTTCATGG-AATGC-TCCATTTTA  137
       || |||||| |||||  ||||||   ||||||| ||||| |||||||||
seq2  TTTCCTATATGGTTTGGAAAGAAAACTTTCATGGAAATGCTTCCATTTTA  149

seq1  -TCTCTG-ACG-ATTATT-CTTTG-TTCT-GGAAGC-TCCATTGCTCGAC  180
       |||||| ||| |||||| ||||| |||| |||||| |||||||||||||
seq2  TTCTCTGAACGAATTATTCCTTTGTTTCTGGGAAGCTTCCATTGCTCGAC  199

seq1  -AGTAAATATAA-GTGACTCA-CCTTCTGTCAAAATGC-TATTAGCCTGT  226
       ||||||||||| |||||||| ||||||||| |||||| |||||||||||
seq2  AAGTAAATATAAGGTGACTCACCCTTCTGTC-AAATGCTTATTAGCCTGT  248

seq1  AGTATCTAACTCTAACAGCATGGGGACACGTTTAGGAGCTTCTAATTCCT  276
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTATCTAACTCTAACAGCATGGGGACACGTTTAGGAGCTTCTAATTCC-  297

seq1  TTGTGTCTTTATTT-ACTTATTTCAAACTTTACTTAATTCATCATTTT-A  324
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  TTGTGTCTTTATTTAACTTATTTCAAACTTTACTTAATTCATCATTTTAA  347

seq1  GTCATCATTCTGGTCTCTTGGGAAGGTCTTGAACTCCCTCTATAGCAGAA  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCATTCTGGTCTCTTGGGAAGGTCTTGAACTCCCTCTATAGCAGAA  397

seq1  TATGAACCAAACCTACATTCTCTTTGGCTTCTAACTGAATTCTGGGATCA  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACCAAACCTACATTCTCTTTGGCTTCTAACTGAATTCTGGGATCA  447

seq1  CAGGCGTGCGCCATGCCCAGCTATGTGTTTGGTTCCAATTCGCATATCCT  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGTGCGCCATGCCCAGCTATGTGTTTGGTTCCAATTCGCATATCCT  497

seq1  GATCCTGTGGTTTGAGTGTGGCCGCAAAGGTTACGCGTGTTAATGCTTAG  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGTGGTTTGAGTGTGGCCGCAAAGGTTACGCGTGTTAATGCTTAG  547

seq1  TCCTCATTGTGAGGCACTGAGAGGGTGAGAGTGTCATTCACCATGTGGGT  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATTGTGAGGCACTGAGAGGGTGAGAGTGTCATTCACCATGTGGGT  597

seq1  TCACATTTTGGTGGAGATTAGGATTAGGTAAGGTCCTCAGGATGCAGGGT  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTTGGTGGAGATTAGGATTAGGTAAGGTCCTCAGGATGCAGGGT  647

seq1  CTGAGGTTTTTGGAGGGAAGAAAAAGCGGGGAGAGAAAGAGGGAGAGGAG  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTTTTGGAGGGAAGAAAAAGCGGGGAGAGAAAGAGGGAGAGGAG  697

seq1  GAGGAAGAGGAAATGGGGGAGGGGAAAAAGAAGAGGAAATAAACACACCC  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGGAAATGGGGGAGGGGAAAAAGAAGAGGAAATAAACACACCC  747

seq1  CAGAACTTGGGTCTTTTACTGTCTGTGCCTTATACCTCCTCAGGAGTCTA  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTTGGGTCTTTTACTGTCTGTGCCTTATACCTCCTCAGGAGTCTA  797

seq1  CCATCAAGAAAGCCCTTTCTAGCTATGATTTTGTGTATGTGTGTGTGTTG  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAGAAAGCCCTTTCTAGCTATGATTTTGTGTATGTGTGTGTGTTG  847

seq1  TTGTTGTTGTTTGTATTCTGCTTTGTTTTTTGAGACACAGTTTCTCTGTG  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTTGTATTCTGCTTTGTTTTTTGAGACACAGTTTCTCTGTG  897

seq1  TAACAGCCCTGGCTGTCCTGGCACTCACTTAGTAGACCAGGCTGGCCTCC  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCCCTGGCTGTCCTGGCACTCACTTAGTAGACCAGGCTGGCCTCC  947

seq1  AACTCACAGCAATCCATCTGTCTCTGCCTCCCAAGTACTGGGACTAAAGG  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAGCAATCCATCTGTCTCTGCCTCCCAAGTACTGGGACTAAAGG  997

seq1  CAAGCACCACCATGCCCGGCTTCCAGCCCCTGTGTTAGTAGTTAGTCCTT  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACCACCATGCCCGGCTTCCAGCCCCTGTGTTAGTAGTTAGTCCTT  1047

seq1  CCTTTCCTCCTCTTATATTCACTGCTCTACAGTTTGTGTAAACAGTCAAG  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTCCTCTTATATTCACTGCTCTACAGTTTGTGTAAACAGTCAAG  1097

seq1  TATCCTTTTTTTTTCCTCTTGTGTAAGCTTTTGGACAGAATTC  1117
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTTTTTTTTCCTCTTGTGTAAGCTTTTGGACAGAATTC  1140

seq1: chr2_72408774_72409565
seq2: B6Ng01-244J24.g_67_864

seq1  GAATTCTTATATGGATAGAATCCTCAGAGCCAGCAGGATGCAGGTCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATATGGATAGAATCCTCAGAGCCAGCAGGATGCAGGTCATCA  50

seq1  CCCTTACTTGCATCAGCAAAGGGGTAGAAAGAGTAGAGATACTGGATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACTTGCATCAGCAAAGGGGTAGAAAGAGTAGAGATACTGGATAGT  100

seq1  GGACATATGATGCAATTCCTAGGCGGCTGCGGGAGAAGGTGAGCGGGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATATGATGCAATTCCTAGGCGGCTGCGGGAGAAGGTGAGCGGGGGT  150

seq1  GGGAGGGATAGAGCATCGGGAAGCGAGGGGCTCAAGGAGGAGGCAGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGATAGAGCATCGGGAAGCGAGGGGCTCAAGGAGGAGGCAGCTGA  200

seq1  GTCCTTGATGGTGGCTCAGTGACTGGGCATGTGCCTTCTTTGGGGGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGATGGTGGCTCAGTGACTGGGCATGTGCCTTCTTTGGGGGAAAT  250

seq1  GTCTGTCTAGGCCTATTTGCCATGTTAAGACTGGATTCTTATGATTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTAGGCCTATTTGCCATGTTAAGACTGGATTCTTATGATTTTGA  300

seq1  TCCTGAAGCCTGCAGCTCCTTAAAAGGACCACCCCATGTCAAATGTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGCCTGCAGCTCCTTAAAAGGACCACCCCATGTCAAATGTATCA  350

seq1  CTTGTAAATAGTTTCTCCCATTTTTGTAAGTTGTCTCTTCACTCTGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAATAGTTTCTCCCATTTTTGTAAGTTGTCTCTTCACTCTGCTGA  400

seq1  TTGATTGTGTCTTTTGAGCTCTAGAAGAAGCCTATTAGTTTGATAAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTGTCTTTTGAGCTCTAGAAGAAGCCTATTAGTTTGATAAGTCT  450

seq1  TGTCTACTTTAGCCTTTCCTACCTATGCATTTGGTGTGATATTAAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACTTTAGCCTTTCCTACCTATGCATTTGGTGTGATATTAAAAAAT  500

seq1  ATCCTTATCCAGATCGGTGCTGGGGGGCTTTTCTAGAAGAGGAGCATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTATCCAGATCGGTGCTGGGGGGCTTTTCTAGAAGAGGAGCATTTA  550

seq1  GCATCACCCAGCTCTACTTTCTTGCCAGCACACGCATGCCCAAGGTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACCCAGCTCTACTTTCTTGCCAGCACACGCATGCCCAAGGTGGTG  600

seq1  GAAAAACAGATATTCAAAGTCATTTCC-TGAAAGAGCTTGACCCATAGGA  649
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAAAACAGATATTCAAAGTCATTTCCTTGAAAGAGCTTGACCCATAGGA  650

seq1  ACAGGACTGTTTGAGCAAAGCTACACAAGTTACTTCAGTGATTATTCTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTGTTTGAGCAAAGCTACACAAGTTACTTCAGTGATTATTCTAT  700

seq1  AGAAGCCGAGTT-CAAGCAAAAGGCCAGATGCTGC-TGGAAAGAGAACCC  747
      |||||| ||||| |||||||||||||||||||||| ||||||||||||||
seq2  AGAAGCTGAGTTCCAAGCAAAAGGCCAGATGCTGCTTGGAAAGAGAACCC  750

seq1  -TGCTATGAAA--GACAAGCGTGTGAACATGATGGGATCAGGGTGTGT  792
       ||||||||||   |||||||||||||||   ||||||||||||||||
seq2  TTGCTATGAAAAGAACAAGCGTGTGAACAGATTGGGATCAGGGTGTGT  798