BAC Information

Click to search

BAC

Clone NameB6Ng01-246B19
Chromosome2 (Build37)
Map Location 71,732,766 - 71,872,522
singlet/doubletdoublet
Overlap genePdk1, Rapgef4
Upstream geneMettl8, 4833418A01Rik, Cybrd1, Dync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6
Downstream geneLOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246B19.bB6Ng01-246B19.g
ACCGA054820GA054821
length1,0771,165
definitionB6Ng01-246B19.b B6Ng01-246B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,732,766 - 71,733,818)(71,871,403 - 71,872,522)
sequence
gaattcttctgtgttgcaaagtttcgtttatttgttgtgtctgcgtgtgt
ccagcacaggtgtggaggtcagaggtggagcagggtgatgctcatgcctc
catgtgcaccctgggattgatcaggtcttagactcggtggcaagtacctt
taccattgggccatctcatggcccttagttttgttttattgagacattat
agcacaagctagtctctaattatcgcagttctcctgcctcggcctcctgt
atgctgagattgtaggtgtgtagcaccacaccgaattccttaaaaagaga
gatctattgtagttatctgtatgtgtctatgggttacacatgggtgcagt
gcccgtggaggccagaagtaggtgttggatcccttagaactgaagttact
gatagtcttgagccaccaagtaggagctaggaaccaaacgcagacctctg
gaagagcagccagtgtttttaactgcaaagccatctcagcccatttcaca
cttctgttttataatatatttacaaagttagaattgtgagtgtttctaac
ttgttctttattgtctatttttttgtagacctctcttttgctaataccca
agaatgctctacatcacattttaaatggctacatagtattctgttttaga
atgcactttatgtggtccctgtgtgggctactctctggtttttcttaaaa
ccatgatggatattctcatgtgtactttgcctgctttagttttttttagg
atagacgtaggaggtggtactgttgtgtagagtgtcccttgctttttttt
atttattttatcctgattattcatattgtccaccagggaaggattaactc
tgtgtttagccacaccatttcagggcagtgttaaagttttgcagcttgga
ttctccaaaagcagctcttcaactctccaaagtagttaagtcaagattct
gccaaggtgtggggcccaggttaccagtttgggtcctttttccttagatg
agtgaccgggggaaggcggtgtttccactgaggaagatcgaccgactctt
ccaactacatggtactccaacccgcac
gaattcaatggacacttaactgtgggggaagtaggtttgaaaatatgtct
ctaaaatgtggtagacaaggtcatgaatttgagaaggagctgggagggta
caaggaggtggagcaggagatagagggctggtaatggtgtaaatacagta
ctcatatatgaaatcctcaggaaaaacaaatcttactaaagacaacagta
atgatacgccctagctttatttgatttgattttgcatgtgatatgttact
gaggattgaacctggggcctcacacatgctaggcaagtatctcaccactg
acctacacacccagcacatttctgttttaatgacagggtagattacctgg
tgactgctggtctcagacactttaacatccaaagacccagccaggacagc
ataccagttggttccaatatccccttggcgaaacactgaaagagaaacag
tgatgtcagcacaccgtgtacaggtttgatgactgcaacctgatagatcc
ccactggccatggcaagcttggcttattctcacccttctttgatccattc
caacaagaatacaacatggctttcctcaaagccatccacccacaaagctt
atccgatagattcaacattctaggaagcagatacccatcaatagaatgcc
tccagacactgatctgtaataactgatcaccctgactgcaggaagatcca
ttggctcaacgtcatcactccaaaggtggatctctgtgagtctgaggcca
ctatgtttacatagtgagttctggggggagccagcaccacacaaaacatg
ggactgtcataatttcactaacatcctgtggtcctcatcctaaatacact
ttcactatgcttgtgattcttggaaaacgatgacttctaaaacaggaaga
aaagggctttattgggacttgcctaccgttaatgccacccaactttcagg
ggttcgaacatcaaaaaccaccgtggtgggcctaacaggtgccaggcact
tcaaggcctggaggatgaggaggaacatgaaatctggtgggtccagtctc
aaataggtttagcaaaacttaaggtcaggaaagttaagtaaactgaactg
aatggattctaatgtcgttttctaaaagataaacacgggttctatgaact
accaagaattgcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_71732766_71733818
seq2: B6Ng01-246B19.b_47_1123

seq1  GAATTCTTCTGTGTTGCAAAGTTTCGTTTATTTGTTGTGTCTGCGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTGTTGCAAAGTTTCGTTTATTTGTTGTGTCTGCGTGTGT  50

seq1  CCAGCACAGGTGTGGAGGTCAGAGGTGGAGCAGGGTGATGCTCATGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACAGGTGTGGAGGTCAGAGGTGGAGCAGGGTGATGCTCATGCCTC  100

seq1  CATGTGCACCCTGGGATTGATCAGGTCTTAGACTCGGTGGCAAGTACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCACCCTGGGATTGATCAGGTCTTAGACTCGGTGGCAAGTACCTT  150

seq1  TACCATTGGGCCATCTCATGGCCCTTAGTTTTGTTTTATTGAGACATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTGGGCCATCTCATGGCCCTTAGTTTTGTTTTATTGAGACATTAT  200

seq1  AGCACAAGCTAGTCTCTAATTATCGCAGTTCTCCTGCCTCGGCCTCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAGCTAGTCTCTAATTATCGCAGTTCTCCTGCCTCGGCCTCCTGT  250

seq1  ATGCTGAGATTGTAGGTGTGTAGCACCACACCGAATTCCTTAAAAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAGATTGTAGGTGTGTAGCACCACACCGAATTCCTTAAAAAGAGA  300

seq1  GATCTATTGTAGTTATCTGTATGTGTCTATGGGTTACACATGGGTGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATTGTAGTTATCTGTATGTGTCTATGGGTTACACATGGGTGCAGT  350

seq1  GCCCGTGGAGGCCAGAAGTAGGTGTTGGATCCCTTAGAACTGAAGTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTGGAGGCCAGAAGTAGGTGTTGGATCCCTTAGAACTGAAGTTACT  400

seq1  GATAGTCTTGAGCCACCAAGTAGGAGCTAGGAACCAAACGCAGACCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCTTGAGCCACCAAGTAGGAGCTAGGAACCAAACGCAGACCTCTG  450

seq1  GAAGAGCAGCCAGTGTTTTTAACTGCAAAGCCATCTCAGCCCATTTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGCCAGTGTTTTTAACTGCAAAGCCATCTCAGCCCATTTCACA  500

seq1  CTTCTGTTTTATAATATATTTACAAAGTTAGAATTGTGAGTGTTTCTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTTTATAATATATTTACAAAGTTAGAATTGTGAGTGTTTCTAAC  550

seq1  TTGTTCTTTATTGTCTATTTTTTTGTAGACCTCTCTTTTGCTAATACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTATTGTCTATTTTTTTGTAGACCTCTCTTTTGCTAATACCCA  600

seq1  AGAATGCTCTACATCACATTTTAAATGGCTACATAGTATTCTGTTTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTCTACATCACATTTTAAATGGCTACATAGTATTCTGTTTTAGA  650

seq1  ATGCACTTTATGTGGTCCCTGTGTGGGCTACTCTCTGGTTTTTCTTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTTTATGTGGTCCCTGTGTGGGCTACTCTCTGGTTTTTCTTAAAA  700

seq1  CCATGATGGATATTCTCATGTGTACTTTGCCTGCTTTAG-TTTTTTTAGG  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCATGATGGATATTCTCATGTGTACTTTGCCTGCTTTAGTTTTTTTTAGG  750

seq1  ATAGACGTAGGAGGTGGTACTGTTGTGTAGAGTGT-CCTTGC-TTTTTTT  797
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  ATAGACGTAGGAGGTGGTACTGTTGTGTAGAGTGTCCCTTGCTTTTTTTT  800

seq1  ATTTATTTTATCCTGATTA-TCATATTGTCCACCA-GGAAGGATTAACTC  845
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  ATTTATTTTATCCTGATTATTCATATTGTCCACCAGGGAAGGATTAACTC  850

seq1  TGTG-TTAGCCACACCA-TTCAGGGCAGTGTTAAAG-TTTGCAGCTTGGA  892
      |||| |||||||||||| |||||||||||||||||| |||||||||||||
seq2  TGTGTTTAGCCACACCATTTCAGGGCAGTGTTAAAGTTTTGCAGCTTGGA  900

seq1  TTC-CCAAAAGCAGC-CTTCA---CCCCAAAGTAGTTAAGTCAGGATTCT  937
      ||| ||||||||||| |||||   | ||||||||||||||||| ||||||
seq2  TTCTCCAAAAGCAGCTCTTCAACTCTCCAAAGTAGTTAAGTCAAGATTCT  950

seq1  G-CAAGGTGTGGG--CCCGGTTA-CAGTTT-GGTCCTTTTTCCTTTAGAT  982
      | |||||||||||  || ||||| |||||| |||||||||||| ||||||
seq2  GCCAAGGTGTGGGGCCCAGGTTACCAGTTTGGGTCCTTTTTCC-TTAGAT  999

seq1  GAGTGACCGGGG--AGGCGGTG-TTCCACTGAGGAAGATCGACAGACTCT  1029
      ||||||||||||  |||||||| |||||||||||||||||||| ||||||
seq2  GAGTGACCGGGGGAAGGCGGTGTTTCCACTGAGGAAGATCGACCGACTCT  1049

seq1  T-CAACTACAT-GTACTC--AACCGCAC  1053
      | ||||||||| ||||||  | ||||||
seq2  TCCAACTACATGGTACTCCAACCCGCAC  1077

seq1: chr2_71871403_71872522
seq2: B6Ng01-246B19.g_69_1233 (reverse)

seq1  GAAGCAATCCTTTGGTAGGTTTAAAAGGAAACGTGTTACTC---TAG-AA  46
      |||||||| | |||||||  || | || |  ||||||  ||   ||| ||
seq2  GAAGCAATTC-TTGGTAG--TTCATAGAACCCGTGTTTATCTTTTAGAAA  47

seq1  ACGACATTAG-ATCCATTCATTTAA--TTAACTAAC-TTCCTGAC--TTA  90
      |||||||||| ||||||||| || |  |||  |||| ||||||||  | |
seq2  ACGACATTAGAATCCATTCAGTTCAGTTTACTTAACTTTCCTGACCTTAA  97

seq1  GTTTTGCTAA--CTATT--GGGCTGG--CCA-CAGA-TTCATGGTCCT-C  131
      ||||||||||  |||||   | ||||  ||| |||| |||||| |||| |
seq2  GTTTTGCTAAACCTATTTGAGACTGGACCCACCAGATTTCATGTTCCTCC  147

seq1  TCA-CCTC--AGCCT--GAGTG-CTGGCA-CTGT--GGGCCACCACGGTG  172
      ||| ||||   ||||   |||| |||||| ||||  || |||||||||||
seq2  TCATCCTCCAGGCCTTGAAGTGCCTGGCACCTGTTAGGCCCACCACGGTG  197

seq1  G-TTTTGATG-TCG-ACCCCTG-AAGTTGGGTGGCA-TAAC-GTA-GCAA  215
      | |||||||| ||| ||||||| ||||||||||||| |||| ||| ||||
seq2  GTTTTTGATGTTCGAACCCCTGAAAGTTGGGTGGCATTAACGGTAGGCAA  247

seq1  GT-CCAAT-AAGCC--TTTC-TCCTG-TTTAG-AGTCATCGTTTTCCAAG  258
      || ||||| |||||  |||| ||||| ||||| |||||||||||||||||
seq2  GTCCCAATAAAGCCCTTTTCTTCCTGTTTTAGAAGTCATCGTTTTCCAAG  297

seq1  AATCAC-AGCATAGTG-AAGTGTATTTAGGATGAGGACCACAGGATGTTA  306
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  AATCACAAGCATAGTGAAAGTGTATTTAGGATGAGGACCACAGGATGTTA  347

seq1  GTG-AATTATGACAGT-CCATGTTTTGTGTGGTGCTGGCT-CCCCCAGAA  353
      ||| |||||||||||| ||||||||||||||||||||||| |||||||||
seq2  GTGAAATTATGACAGTCCCATGTTTTGTGTGGTGCTGGCTCCCCCCAGAA  397

seq1  CTCACTATGTAAACATAGTGGCCTCAGACTCACAGAGATCCACC-TTGGA  402
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCACTATGTAAACATAGTGGCCTCAGACTCACAGAGATCCACCTTTGGA  447

seq1  GTGATGACGTTGAGCCAATGGATCTTCCTGCAGTCAGGGTGATCAGTTAT  452
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGACGTTGAGCCAATGGATCTTCCTGCAGTCAGGGTGATCAGTTAT  497

seq1  TACAGATCAGTGTCTGGAGGCATTCTATTGATGGGTATCTGCTTCCTAGA  502
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATCAGTGTCTGGAGGCATTCTATTGATGGGTATCTGCTTCCTAGA  547

seq1  ATGTTGAATCTATCGGATAAGCTTTGTGGGTGGATGGCTTTGAGGAAAGC  552
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAATCTATCGGATAAGCTTTGTGGGTGGATGGCTTTGAGGAAAGC  597

seq1  CATGTTGTATTCTTGTTGGAATGGATCAAAGAAGGGTGAGAATAAGCCAA  602
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGTATTCTTGTTGGAATGGATCAAAGAAGGGTGAGAATAAGCCAA  647

seq1  GCTTGCCATGGCCAGTGGGGATCTATCAGGTTGCAGTCATCAAACCTGTA  652
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCATGGCCAGTGGGGATCTATCAGGTTGCAGTCATCAAACCTGTA  697

seq1  CACGGTGTGCTGACATCACTGTTTCTCTTTCAGTGTTTCGCCAAGGGGAT  702
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGTGCTGACATCACTGTTTCTCTTTCAGTGTTTCGCCAAGGGGAT  747

seq1  ATTGGAACCAACTGGTATGCTGTCCTGGCTGGGTCTTTGGATGTTAAAGT  752
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAACCAACTGGTATGCTGTCCTGGCTGGGTCTTTGGATGTTAAAGT  797

seq1  GTCTGAGACCAGCAGTCACCAGGTAATCTACCCTGTCATTAAAACAGAAA  802
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGACCAGCAGTCACCAGGTAATCTACCCTGTCATTAAAACAGAAA  847

seq1  TGTGCTGGGTGTGTAGGTCAGTGGTGAGATACTTGCCTAGCATGTGTGAG  852
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGGGTGTGTAGGTCAGTGGTGAGATACTTGCCTAGCATGTGTGAG  897

seq1  GCCCCAGGTTCAATCCTCAGTAACATATCACATGCAAAATCAAATCAAAT  902
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGTTCAATCCTCAGTAACATATCACATGCAAAATCAAATCAAAT  947

seq1  AAAGCTAGGGCGTATCATTACTGTTGTCTTTAGTAAGATTTGTTTTTCCT  952
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGGGCGTATCATTACTGTTGTCTTTAGTAAGATTTGTTTTTCCT  997

seq1  GAGGATTTCATATATGAGTACTGTATTTACACCATTACCAGCCCTCTATC  1002
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTCATATATGAGTACTGTATTTACACCATTACCAGCCCTCTATC  1047

seq1  TCCTGCTCCACCTCCTTGTACCCTCCCAGCTCCTTCTCAAATTCATGACC  1052
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCCACCTCCTTGTACCCTCCCAGCTCCTTCTCAAATTCATGACC  1097

seq1  TTGTCTACCACATTTTAGAGACATATTTTCAAACCTACTTCCCCCACAGT  1102
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTACCACATTTTAGAGACATATTTTCAAACCTACTTCCCCCACAGT  1147

seq1  TAAGTGTCCATTGAATTC  1120
      ||||||||||||||||||
seq2  TAAGTGTCCATTGAATTC  1165