BAC Information

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BAC

Clone NameB6Ng01-247G21
Chromosome2 (Build37)
Map Location 73,566,111 - 73,612,369
singlet/doubletdoublet
Overlap genenone
Upstream gene6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1
Downstream geneAtf2, Atp5g3, LOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247G21.bB6Ng01-247G21.g
ACCGA055767GA055768
length1,2041,106
definitionB6Ng01-247G21.b B6Ng01-247G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,611,164 - 73,612,369)(73,566,111 - 73,567,218)
sequence
gaattcagtttttcaaagtaggaaggtgcaatgatgtattaggaataacc
tattattaatatccaagcacatttctcacaagttattcggcatatccagt
ttccagttaagttttaattatgtcatctgaccaggcacagttatgttgtc
acataccataaatgctttttgttgtaaatacctccaagtgaattcagctg
ctggcatcagttacttctgtttcttctttctctggaaaataatatcttta
ctttaccttgtatttaatctgcattatttaatggaaatggggactttttt
gtacaaaggttacaaatgctataagactgtacccttagcttatattttct
ttagaagcaatggctgtggctggttagcaactgttgcagcgaatgcacag
cagtaagatttccagaggaaatcttcagactgtattggaacaattgatct
gtccgggtttctaatgacatattctgcattttttaagggtttcaaagtaa
attgtactcatctagtattttctagaacactgacattcctgataagcaag
gcagttaaactggggacacaatacactttttaaaagatttttagcttgta
agcctttacctaggtggaaataagtaaaagaagggcatgaaattgttacc
tgtgtgggaaactgttcccgtccctcagcaggaatgacttggtttcagtg
ttttgatatgtgcttgtgaaaaatagaattcagtttgcataaatacactt
tgctacaatgcgaacgtagcataccttggtacctcagaacagaagtaggg
gttggaaaagagagagagagggtggggactgagagagcctgagagactct
tactctgtagcctcggtttgcctagaatttactcagtagcccaggtgcca
ggattacagggatgagctaccacacccacttttttgtagtgatggagcag
cagctgtttttaactgtgtcctgttgcagatcattcctgtctcctgtgtc
atctatctgtctgctaaatgtagatgctttgtccaagttcaaggtgaagg
atttttaaaaggacactcaagaattctccttaggtgcaccactgaagttt
gagaagtattgattacaagcaaagaactaggaattgaatctatttgctcg
gttcaaaaacatttggccatatgtaaaggaaagatacctaaagagttcag
agaa
gaattcagtgagtcaccacacaaaaacaaaagctgggaaacgtgggagga
agtcttgcagggagaggaggagggataaggagagtgaatggtggaaaaat
acatggaatcagtgcactacatacaagaaagaaattgtcaaagtctaact
taaagaggaaaaaaatctaagaagaaaacaaattggcttcacacttagca
aatcattttagtgttgatcctggttatcagacatctaggcatcctatcta
taccaatggttacactgcagcacgtcatgcagctgctagaagattcaact
atatgagtaaggatagatgtcttacaattacatgcaaaatagttttaact
ctgaggattctgggcctctgggttgcactctgaaaatgatgattctaaat
caccatttctttaatgtattgagagtacaggataaagtgaggtaagagat
cttccacctgataagacacatataaataaactaatgggaaaagagaggat
tggaaaccctgtgtttctttagcacagagcagtagctaattgaaatagag
ttatcaagaaccaagaagcagtagattctgatctccatgggtgtcttaaa
agctctggcatctttctaattgcatcagaatatctgcccagacaaagagc
acaagtgcatgagactcccgtcattagagcacaactgggaacgagaacca
gacaacatatgactcgtgaacagctttaaacacagcccaggcatggtgca
ggtgacaagcacgagggaaatcagagacagtctacagaacagaagaaaca
tttataaactatagcctggcaaagaagtaacatgcagaagctaaccatga
tggctcatgtctacgatgggcagctaaggcaagaggattatgatgtcagg
gctagcctagaccatatgggttggattctgtatcccaaaacaggcaaact
gacattatttagaatatgtaaaggagcctccaagaactcatcagcataaa
tcacatgactcattctgaaaatagtgataatcctaatagtttttctcaga
agacatctaatgggccactataaaacaccttggacatcataacatgaagg
gataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_73611164_73612369
seq2: B6Ng01-247G21.b_43_1246 (reverse)

seq1  TTCTCT-AACTC-TTAGGTA-CTTCTCTTTACATATGCAAAAATGTTTTT  47
      |||||| ||||| ||||||| |||  |||||||||||   ||||||||| 
seq2  TTCTCTGAACTCTTTAGGTATCTTTCCTTTACATATGGCCAAATGTTTT-  49

seq1  GTGAACCGAGCCAATTAGATTCAATCCCCTAG-TCTTTGCCTGTAATTCA  96
       ||||||||| ||| ||||||||||  ||||| ||||||| ||||| |||
seq2  -TGAACCGAG-CAAATAGATTCAAT-TCCTAGTTCTTTGCTTGTAA-TCA  95

seq1  ATACCTCTCAAACTTCAGT-GTGCACCTAA-GAGAATCTTTGAGTGTCCC  144
      |||| |||||||||||||| |||||||||| ||||||  |||||||||| 
seq2  ATACTTCTCAAACTTCAGTGGTGCACCTAAGGAGAATTCTTGAGTGTCCT  145

seq1  TTTAAAAATCCCTTTCACCCTGGACTTGGACAAAAGCATCTACATTTAGC  194
      |||||||||||  |||||| || |||||||| ||||||||||||||||||
seq2  TTTAAAAATCC--TTCACCTTGAACTTGGAC-AAAGCATCTACATTTAGC  192

seq1  AGACAGATAGATGACACAGGAGACAGGAATGATCTGCAACAGGACACAGT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATAGATGACACAGGAGACAGGAATGATCTGCAACAGGACACAGT  242

seq1  TAAAAACAGCTGCTGCTCCATCACTACAAAAAAGTGGGTGTGGTAGCTCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAGCTGCTGCTCCATCACTACAAAAAAGTGGGTGTGGTAGCTCA  292

seq1  TCCCTGTAATCCTGGCACCTGGGCTACTGAGTAAATTCTAGGCAAACCGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTAATCCTGGCACCTGGGCTACTGAGTAAATTCTAGGCAAACCGA  342

seq1  GGCTACAGAGTAAGAGTCTCTCAGGCTCTCTCAGTCCCCACCCTCTCTCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAGAGTAAGAGTCTCTCAGGCTCTCTCAGTCCCCACCCTCTCTCT  392

seq1  CTCTTTTCCAACCCCTACTTCTGTTCTGAGGTACCAAGGTATGCTACGTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCCAACCCCTACTTCTGTTCTGAGGTACCAAGGTATGCTACGTT  442

seq1  CGCATTGTAGCAAAGTGTATTTATGCAAACTGAATTCTATTTTTCACAAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTGTAGCAAAGTGTATTTATGCAAACTGAATTCTATTTTTCACAAG  492

seq1  CACATATCAAAACACTGAAACCAAGTCATTCCTGCTGAGGGACGGGAACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATCAAAACACTGAAACCAAGTCATTCCTGCTGAGGGACGGGAACA  542

seq1  GTTTCCCACACAGGTAACAATTTCATGCCCTTCTTTTACTTATTTCCACC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCACACAGGTAACAATTTCATGCCCTTCTTTTACTTATTTCCACC  592

seq1  TAGGTAAAGGCTTACAAGCTAAAAATCTTTTAAAAAGTGTATTGTGTCCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAAGGCTTACAAGCTAAAAATCTTTTAAAAAGTGTATTGTGTCCC  642

seq1  CAGTTTAACTGCCTTGCTTATCAGGAATGTCAGTGTTCTAGAAAATACTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAACTGCCTTGCTTATCAGGAATGTCAGTGTTCTAGAAAATACTA  692

seq1  GATGAGTACAATTTACTTTGAAACCCTTAAAAAATGCAGAATATGTCATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTACAATTTACTTTGAAACCCTTAAAAAATGCAGAATATGTCATT  742

seq1  AGAAACCCGGACAGATCAATTGTTCCAATACAGTCTGAAGATTTCCTCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCGGACAGATCAATTGTTCCAATACAGTCTGAAGATTTCCTCTG  792

seq1  GAAATCTTACTGCTGTGCATTCGCTGCAACAGTTGCTAACCAGCCACAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTACTGCTGTGCATTCGCTGCAACAGTTGCTAACCAGCCACAGC  842

seq1  CATTGCTTCTAAAGAAAATATAAGCTAAGGGTACAGTCTTATAGCATTTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTCTAAAGAAAATATAAGCTAAGGGTACAGTCTTATAGCATTTG  892

seq1  TAACCTTTGTACAAAAAAGTCCCCATTTCCATTAAATAATGCAGATTAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTTGTACAAAAAAGTCCCCATTTCCATTAAATAATGCAGATTAAA  942

seq1  TACAAGGTAAAGTAAAGATATTATTTTCCAGAGAAAGAAGAAACAGAAGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGTAAAGTAAAGATATTATTTTCCAGAGAAAGAAGAAACAGAAGT  992

seq1  AACTGATGCCAGCAGCTGAATTCACTTGGAGGTATTTACAACAAAAAGCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGCCAGCAGCTGAATTCACTTGGAGGTATTTACAACAAAAAGCA  1042

seq1  TTTATGGTATGTGACAACATAACTGTGCCTGGTCAGATGACATAATTAAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTATGTGACAACATAACTGTGCCTGGTCAGATGACATAATTAAA  1092

seq1  ACTTAACTGGAAACTGGATATGCCGAATAACTTGTGAGAAATGTGCTTGG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACTGGAAACTGGATATGCCGAATAACTTGTGAGAAATGTGCTTGG  1142

seq1  ATATTAATAATAGGTTATTCCTAATACATCATTGCACCTTCCTACTTTGA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATAATAGGTTATTCCTAATACATCATTGCACCTTCCTACTTTGA  1192

seq1  AAAACTGAATTC  1206
      ||||||||||||
seq2  AAAACTGAATTC  1204

seq1: chr2_73566111_73567218
seq2: B6Ng01-247G21.g_69_1174

seq1  GAATTCAGTGAGTCACCACACAAAAACAAAAGCTGGGAAACGTGGGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAGTCACCACACAAAAACAAAAGCTGGGAAACGTGGGAGGA  50

seq1  AGTCTTGCAGGGAGAGGAGGAGGGATAAGGAGAGTGAATGGTGGAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGCAGGGAGAGGAGGAGGGATAAGGAGAGTGAATGGTGGAAAAAT  100

seq1  ACATGGAATCAGTGCACTACATACAAGAAAGAAATTGTCAAAGTCTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAATCAGTGCACTACATACAAGAAAGAAATTGTCAAAGTCTAACT  150

seq1  TAAAGAGGAAAAAAATCTAAGAAGAAAACAAATTGGCTTCACACTTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGGAAAAAAATCTAAGAAGAAAACAAATTGGCTTCACACTTAGCA  200

seq1  AATCATTTTAGTGTTGATCCTGGTTATCAGACATCTAGGCATCCTATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTTAGTGTTGATCCTGGTTATCAGACATCTAGGCATCCTATCTA  250

seq1  TACCAATGGTTACACTGCAGCACGTCATGCAGCTGCTAGAAGATTCAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATGGTTACACTGCAGCACGTCATGCAGCTGCTAGAAGATTCAACT  300

seq1  ATATGAGTAAGGATAGATGTCTTACAATTACATGCAAAATAGTTTTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGTAAGGATAGATGTCTTACAATTACATGCAAAATAGTTTTAACT  350

seq1  CTGAGGATTCTGGGCCTCTGGGTTGCACTCTGAAAATGATGATTCTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATTCTGGGCCTCTGGGTTGCACTCTGAAAATGATGATTCTAAAT  400

seq1  CACCATTTCTTTAATGTATTGAGAGTACAGGATAAAGTGAGGTAAGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTCTTTAATGTATTGAGAGTACAGGATAAAGTGAGGTAAGAGAT  450

seq1  CTTCCACCTGATAAGACACATATAAATAAACTAATGGGAAAAGAGAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCTGATAAGACACATATAAATAAACTAATGGGAAAAGAGAGGAT  500

seq1  TGGAAACCCTGTGTTTCTTTAGCACAGAGCAGTAGCTAATTGAAATAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCCTGTGTTTCTTTAGCACAGAGCAGTAGCTAATTGAAATAGAG  550

seq1  TTATCAAGAACCAAGAAGCAGTAGATTCTGATCTCCATGGGTGTCTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAGAACCAAGAAGCAGTAGATTCTGATCTCCATGGGTGTCTTAAA  600

seq1  AGCTCTGGCATCTTTCTAATTGCATCAGAATATCTGCCCAGACAAAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGCATCTTTCTAATTGCATCAGAATATCTGCCCAGACAAAGAGC  650

seq1  ACAAGTGCATGAGACTCCCGTCATTAGAGCACAACTGGGAACGAGAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGCATGAGACTCCCGTCATTAGAGCACAACTGGGAACGAGAACCA  700

seq1  GACAACATATGACTCGTGAACAGCTTTAAACACAGCCCAGGCATGGTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACATATGACTCGTGAACAGCTTTAAACACAGCCCAGGCATGGTGCA  750

seq1  GGTGACAAGCACGAGGGAAATCAGAGACAGTCTACAGAACAGAAGAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAAGCACGAGGGAAATCAGAGACAGTCTACAGAACAGAAGAAACA  800

seq1  TTTATAAACTATAGCCTGGCAAAGAAGTAACATGCAGAAGCTAACCATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAACTATAGCCTGGCAAAGAAGTAACATGCAGAAGCTAACCATGA  850

seq1  TGGCTCATGTCTACGATGGGCAGCTAAGGCAAGAGGATTATGATGTCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATGTCTACGATGGGCAGCTAAGGCAAGAGGATTATGATGTCAGG  900

seq1  GCTAGCCTAGACCATAT-GGTTGGATTCTGTATCCCAAAACAAGGCAAAC  949
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  GCTAGCCTAGACCATATGGGTTGGATTCTGTATCCCAAAAC-AGGCAAAC  949

seq1  TGACA-TATTTAGAATATGT-AAGGAG-CTCCAAGAACTCATCAGCATAA  996
      ||||| |||||||||||||| |||||| ||||||||||||||||||||||
seq2  TGACATTATTTAGAATATGTAAAGGAGCCTCCAAGAACTCATCAGCATAA  999

seq1  ATCCACATGACTCAATTCTGAAAATAAGTGATAATCCTAAATAGGTATTT  1046
      || |||||||||| ||||||||||| |||||||||||| |||| || |||
seq2  AT-CACATGACTC-ATTCTGAAAAT-AGTGATAATCCT-AATA-GTTTTT  1044

seq1  CTCAGAAGACATCTAAATGGCCACTATAAAACAC--TTGACATCATTAAC  1094
      ||||||||||||||||  ||||||||||||||||  | ||||||||  | 
seq2  CTCAGAAGACATCTAATGGGCCACTATAAAACACCTTGGACATCAT--AA  1092

seq1  CATGAGGGGATAAA  1108
      ||||| ||||||||
seq2  CATGAAGGGATAAA  1106