BAC Information

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BAC

Clone NameB6Ng01-247M24
Chromosome2 (Build37)
Map Location 35,118,002 - 35,235,395
singlet/doubletdoublet
Overlap geneGsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik
Upstream genePbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14
Downstream geneGgta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247M24.bB6Ng01-247M24.g
ACCGA056051GA056052
length1,148368
definitionB6Ng01-247M24.b B6Ng01-247M24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,118,002 - 35,119,155)(35,235,023 - 35,235,395)
sequence
gaattctttttgtggcaactgcgtgtatacagtagaccatagtacttggg
agggaattccccatcagtcctttgtatacatctgcacattcccatattgt
tctcatactgcagaggactgggactttttatcccgtctgtagctcaaaag
ggtccccccatgttacgagaaaaactcacaatctatagagaaatggaaaa
ttaatttattcgtggttttgcccgaaatgatggtgagcgggagagttgca
atctgcctctgcttggctcatagcagagtggcaagtgtagaggggaaaag
agagacaaaagccaggaaataaatataatagctgagggtttctcttggcg
ttagggctcctgtgggtggctcaccctcgctccctacatggaattttcct
agaagaaccccagttccaaggccctgtcacactgcttggttggcagccga
agggaaagatgctgggctctaatcagaggccctggcagctctggaggccc
cagtttctccaccatgctaagcatcccttcggtgcccacaccaagcttct
ctctgcctccatactcgggactgtggcatcaacctttgtgttgcctgcca
tccctgagactctgtatctggggtgcaggagatattgctcctgactgtct
tctcacctgacaagtctccagatccagcctgcatagatgggctaactgct
tagtgcctgccacctcttcactccccaagcctggggttcccaagccccga
gagagtgagtgtgtcttgaacacccaccggggggataccggggaggggca
tcacttaggatatttcaaaagtatcatccaaatcaaaataatttttattt
tggctactattcaacccaagggcttggaaagattgaggaacctggccatg
gacatacccctagctcatcttgggtgctgagctgggataagtcatttgtt
cactggtctaacctggtctataactcggctcccacttctctgtgaatgtg
atgttccttttctcttctctaatctgcttcataccagttagggctggtct
agggaggtgacatcattgcacctgaaagattgtgctagactccttttagc
attattggaaggagacagaacgatgttctgagatccagaacctcacca
ctcctaatcaaatagaaaaccagagccacgagagtcaactatttaaagag
gaaaacaagtgcaatgaaatgtttccacttaaagatagaagggctgacct
atagacaataaatattgagagagagagagagagagagagagagagagaga
gagagagagagagagagagaggagagagagaagagtgagagagaagagag
agaggagagagagagagagagattagagaggaggagttcagtgaaattag
gacatactgcaaatcaaacatgaaccttgccaggttcaaaattgtgaacc
atcaccacgttgtgaagacatcaagctgggcgtaagtatgcaatgtgcag
ctttcagactctgcacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_35118002_35119155
seq2: B6Ng01-247M24.b_47_1194

seq1  GAATTCTTTTTGTGGCAACTGCGTGTATACAGTAGACCATAGTACTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGTGGCAACTGCGTGTATACAGTAGACCATAGTACTTGGG  50

seq1  AGGGAATTCCCCATCAGTCCTTTGTATACATCTGCACATTCCCATATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATTCCCCATCAGTCCTTTGTATACATCTGCACATTCCCATATTGT  100

seq1  TCTCATACTGCAGAGGACTGGGACTTTTTATCCCGTCTGTAGCTCAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATACTGCAGAGGACTGGGACTTTTTATCCCGTCTGTAGCTCAAAAG  150

seq1  GGTCCCCCCATGTTACGAGAAAAACTCACAATCTATAGAGAAATGGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCCCATGTTACGAGAAAAACTCACAATCTATAGAGAAATGGAAAA  200

seq1  TTAATTTATTCGTGGTTTTGCCCGAAATGATGGTGAGCGGGAGAGTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTATTCGTGGTTTTGCCCGAAATGATGGTGAGCGGGAGAGTTGCA  250

seq1  ATCTGCCTCTGCTTGGCTCATAGCAGAGTGGCAAGTGTAGAGGGGAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTCTGCTTGGCTCATAGCAGAGTGGCAAGTGTAGAGGGGAAAAG  300

seq1  AGAGACAAAAGCCAGGAAATAAATATAATAGCTGAGGGTTTCTCTTGGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAAAAGCCAGGAAATAAATATAATAGCTGAGGGTTTCTCTTGGCG  350

seq1  TTAGGGCTCCTGTGGGTGGCTCACCCTCGCTCCCTACATGGAATTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGCTCCTGTGGGTGGCTCACCCTCGCTCCCTACATGGAATTTTCCT  400

seq1  AGAAGAACCCCAGTTCCAAGGCCCTGTCACACTGCTTGGTTGGCAGCCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAACCCCAGTTCCAAGGCCCTGTCACACTGCTTGGTTGGCAGCCGA  450

seq1  AGGGAAAGATGCTGGGCTCTAATCAGAGGCCCTGGCAGCTCTGGAGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGATGCTGGGCTCTAATCAGAGGCCCTGGCAGCTCTGGAGGCCC  500

seq1  CAGTTTCTCCACCATGCTAAGCATCCCTTCGGTGCCCACACCAAGCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTCCACCATGCTAAGCATCCCTTCGGTGCCCACACCAAGCTTCT  550

seq1  CTCTGCCTCCATACTCGGGACTGTGGCATCAACCTTTGTGTTGCCTGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCATACTCGGGACTGTGGCATCAACCTTTGTGTTGCCTGCCA  600

seq1  TCCCTGAGACTCTGTATCTGGGGTGCAGGAGATATTGCTCCTGACTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAGACTCTGTATCTGGGGTGCAGGAGATATTGCTCCTGACTGTCT  650

seq1  TCTCACCTGACAAGTCTCCAGATCCAGCCTGCATAGATGGGCTAACTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTGACAAGTCTCCAGATCCAGCCTGCATAGATGGGCTAACTGCT  700

seq1  TAGTGCCTGCCACCTCTTCACTCCCCAAGCCTGGGGTTCCCAAGCCCCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCTGCCACCTCTTCACTCCCCAAGCCTGGGGTTCCCAAGCCCCGA  750

seq1  GAGAGTGAGTGTGTCTTGAACACCCACC-GGGGGATACC-GGGAGGGGCA  798
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  GAGAGTGAGTGTGTCTTGAACACCCACCGGGGGGATACCGGGGAGGGGCA  800

seq1  TCACTTAGGATATTTCAAAAGTATCATCCAAATCAAAATAATTTTTATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAGGATATTTCAAAAGTATCATCCAAATCAAAATAATTTTTATTT  850

seq1  TGGCTACTATTCAACCCAAGGGCTTGGAAAGATTGAGGAACCTGGCCATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACTATTCAACCCAAGGGCTTGGAAAGATTGAGGAACCTGGCCATG  900

seq1  GACATACCCCTAGCTCATCTTGGGTGCTGAGCTGGGATAAGTCATTTGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACCCCTAGCTCATCTTGGGTGCTGAGCTGGGATAAGTCATTTGTT  950

seq1  CACTGGTCTAACCTGGTCTATAACTCGGCTCCCACTCCTCTGTGAAATGT  998
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  CACTGGTCTAACCTGGTCTATAACTCGGCTCCCACTTCTCTGTG-AATGT  999

seq1  GAATGTTCC-TTTCTCTTCTCCTAAATCTGCTTCCATACCCAGTTAGGGC  1047
      | ||||||| |||||||||||   ||||||||| |||| |||||||||||
seq2  G-ATGTTCCTTTTCTCTTCTC--TAATCTGCTT-CATA-CCAGTTAGGGC  1044

seq1  TGGGTCTAGGGAGGTGACACCATGGCACCTGAGAAGATGTGGTTAGACTC  1097
      | ||||||||||||||||| ||| |||||||| |||||   | |||||||
seq2  T-GGTCTAGGGAGGTGACATCATTGCACCTGA-AAGATTGTGCTAGACTC  1092

seq1  CTTTTAGCAATATTGAAAGGAGACAGAAACGATGTTCTGAAGATCCA-AG  1146
      ||||||||| ||||| |||||||||| |||||||||||| ||||||| | 
seq2  CTTTTAGCATTATTGGAAGGAGACAG-AACGATGTTCTG-AGATCCAGAA  1140

seq1  ACTCACCA  1154
       |||||||
seq2  CCTCACCA  1148

seq1: chr2_35235023_35235395
seq2: B6Ng01-247M24.g_68_441 (reverse)

seq1  TGGTGCAGAGTCTGAAAGCTGCACATTGCATACTTACGCCCAGCTTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCAGAGTCTGAAAGCTGCACATTGCATACTTACGCCCAGCTTGATG  50

seq1  TCTTCACAACGTGGTGATGGTTCAC-ATTTTGTACCTGGCAAGGTTCATG  99
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  TCTTCACAACGTGGTGATGGTTCACAATTTTGAACCTGGCAAGGTTCATG  100

seq1  TTTGATTTGCAGTATGTCCTAATTTCACTGAACTCCTCCTCTCTCTTCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  TTTGATTTGCAGTATGTCCTAATTTCACTGAACTCCTCCTCTCTAATCTC  150

seq1  TCTCTCTCTCTCTCCTCTCTCTCTTCTCTCTCACTCTTCTCTCTCTCCTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCCTCTCTCTCTTCTCTCTCACTCTTCTCTCTCTCCTC  200

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  250

seq1  TCAATATTTATTGTCTATAGGTCAGCCCTTCTATCTTTAAGTGGAAACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTTATTGTCTATAGGTCAGCCCTTCTATCTTTAAGTGGAAACAT  300

seq1  TTCATTGCACTTGTTTTCCTCTTTAAATAGTTGACTCTCGTGGCTCTGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCACTTGTTTTCCTCTTTAAATAGTTGACTCTCGTGGCTCTGGT  350

seq1  TTTCTATTTGATTAGGAGGAATTC  373
      ||||||||||||||||||||||||
seq2  TTTCTATTTGATTAGGAGGAATTC  374