BAC Information

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BAC

Clone NameB6Ng01-248N06
Chromosome2 (Build37)
Map Location 181,078,718 - 181,234,565
singlet/doubletdoublet
Overlap geneRtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2
Upstream geneEG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3
Downstream geneDnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248N06.bB6Ng01-248N06.g
ACCGA056805GA056806
length1,196468
definitionB6Ng01-248N06.b B6Ng01-248N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,233,376 - 181,234,565)(181,078,718 - 181,079,191)
sequence
gaattcaggttgatatctgccagagacaagaatgaagtcagaaagtgtca
agtaagaatggaaggagatgggtcaccaaagggggacaggagaacatgaa
aactagaaatacctctaaaagcctatgatgatggtctgcacaatggacgg
agaacagctatttcttgggcacatgagatgcaaacccaatatcaccttgt
gctgctagagtacaagaaacactagctaaggcagccaaaccttaggatct
gtttcacttgtgaaaatactaccttttacggtaaggaaaccctgctttaa
aaaaagtagttcagggggctggagagatggcttagcagaggccatggaag
aatgctgcttttactgggttccctagcctgctttctgataccatcagaac
tacttacacaggggtgacagggagctgggtcctcccacatcaatcaatca
agaaaaggcctacaggccattcctatggaggattttccaatccttatttt
atcagttatgattccttctcccaaagggcagtgatggcgcacacttttaa
tccagcacctggaaggcagaggcaggtggatctctgtaagttccaggcta
gcctggtctacagagctagttccaggacaacaaaggatatacaaagaaac
cctatctggaaaaacaaaaaattaatttcaattttttttcctacataact
ctaatttgtgtcaagttgacataaaaactaaccagtactcagaataacca
aattttatgtgaacctggctggaaaataagctatctttatacttggtgat
gatgccagtggcttcaaattcatcctctccctcgttctcctttccttttt
tttgtgatgccagggctagaacacaacctcatacataattggggaaagac
cttttcccaacactgctgtgtaatagttttcctctgagattgaaacattt
ccatccagcagggaaaccctttacgcagaaaaggtaaacaactcaaatag
ctttcaggaaattccctaactaactaggattcacgttgtccctccagtca
gagtcaacaataaaagctggagagttcccttccaggcctggaacttgacc
tgccaaggatggacttcgaagagaaaggtttccaaggctagcttggaacc
gagcagctgccagaagagcagattcaggcaattgctttgaaagagg
tttttttttccccccaaagatttatttattactataaatgagtacactgt
tgctgtctttacacataccagaagagggtgtcagatctcattagatctca
ttacgggtggttgtgagccaccatgtggttgttgggatttgaactcagga
cctctggaagagcagtcagtactcttacctgctgagccatcttgtcagcc
cccagctggaattcttttgtttttgtttttgtttttgtttttttcgagac
agggtttctctgtgtagccttggctgtcctggaactcactttgtagacca
ggctggcctcgaactcagagatccgcctgcctctgcctcccaagtgctgg
gattaaaggtgtgcgccaccacgcccggctcgaatttttatattttcttt
tgaaacatttaaacattacctcaattctttttttgtttttgtttttgatt
tttttttcaagacagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_181233376_181234565
seq2: B6Ng01-248N06.b_49_1244 (reverse)

seq1  CCTC-TTCCAAGCAATTGGCCTGGTATCTGCTTCTTCTGGGCAGCTGCTC  49
      |||| ||| |||||||| |||| | |||||| |||||| |||||||||||
seq2  CCTCTTTCAAAGCAATT-GCCT-GAATCTGC-TCTTCT-GGCAGCTGCTC  46

seq1  TGGTCTCAAAACTCGGCTTTGAAACCTTTCTCTTCTGAGT-CAT-CTTTG  97
       ||| || || || | ||| |||||||||||||||  ||| ||| ||| |
seq2  -GGT-TCCAAGCTAGCCTTGGAAACCTTTCTCTTCGAAGTCCATCCTTGG  94

seq1  CAGCTCAGTTTCAAG--CTGTGAGGG-ACTCT-CAGCTTTTATTGTTGAC  143
      ||| |||  ||| ||  |||  |||| ||||| |||||||||||||||||
seq2  CAGGTCAAGTTCCAGGCCTGGAAGGGAACTCTCCAGCTTTTATTGTTGAC  144

seq1  TCTGACTGGGAGGGACAACGTG-ATTCTAGTTAGTTTTGGGGATTTCCTG  192
      ||||||| |||||||||||||| || |||||||| || ||| ||||||||
seq2  TCTGACT-GGAGGGACAACGTGAATCCTAGTTAG-TTAGGGAATTTCCTG  192

seq1  -AAGCTATTTTGAGTTGTTTACC-TTTCTGCGTAAA-GGTTTCCCTGCTG  239
       |||||| ||||||||||||||| |||||||||||| |||||||||||||
seq2  AAAGCTA-TTTGAGTTGTTTACCTTTTCTGCGTAAAGGGTTTCCCTGCTG  241

seq1  GATGG-AATGTTTCAATCTCAGAGG-AAACTATTACACAGCAGTGTTGGG  287
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  GATGGAAATGTTTCAATCTCAGAGGAAAACTATTACACAGCAGTGTTGGG  291

seq1  -AAAGGTCTTT-CCCAATTATGTATGAGGTTGTGTTCTAG-CCTGGCATC  334
       |||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  AAAAGGTCTTTCCCCAATTATGTATGAGGTTGTGTTCTAGCCCTGGCATC  341

seq1  ACAAAAAAAAGGAAAGGAGAACGAGGGAGAGGATGAATTTGAAGCCACTG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAAGGAAAGGAGAACGAGGGAGAGGATGAATTTGAAGCCACTG  391

seq1  GCATCATCACCAAGTATTAAAGATAGCTTATTTTCCAGCCAGGTTCACAT  434
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCATCATCACCAAGTA-TAAAGATAGCTTATTTTCCAGCCAGGTTCACAT  440

seq1  AAAATTTGGTTATTCTGAGTACTGGTTAGTTTTTATGTCAACTTGACACA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGGTTATTCTGAGTACTGGTTAGTTTTTATGTCAACTTGACACA  490

seq1  AATTAGAGTTATGTAGGAAAAAAAATTGAAATTAATTTTTTGTTTTTCCA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAGTTATGTAGGAAAAAAAATTGAAATTAATTTTTTGTTTTTCCA  540

seq1  GATAGGGTTTCTTTGTATATCCTTTGTTGTCCTGGAACTAGCTCTGTAGA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGTTTCTTTGTATATCCTTTGTTGTCCTGGAACTAGCTCTGTAGA  590

seq1  CCAGGCTAGCCTGGAACTTACAGAGATCCACCTGCCTCTGCCTTCCAGGT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTAGCCTGGAACTTACAGAGATCCACCTGCCTCTGCCTTCCAGGT  640

seq1  GCTGGATTAAAAGTGTGCGCCATCACTGCCCTTTGGGAGAAGGAATCATA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTAAAAGTGTGCGCCATCACTGCCCTTTGGGAGAAGGAATCATA  690

seq1  ACTGATAAAATAAGGATTGGAAAATCCTCCATAGGAATGGCCTGTAGGCC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAAAATAAGGATTGGAAAATCCTCCATAGGAATGGCCTGTAGGCC  740

seq1  TTTTCTTGATTGATTGATGTGGGAGGACCCAGCTCCCTGTCACCCCTGTG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGATTGATTGATGTGGGAGGACCCAGCTCCCTGTCACCCCTGTG  790

seq1  TAAGTAGTTCTGATGGTATCAGAAAGCAGGCTAGGGAACCCAGTAAAAGC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGTTCTGATGGTATCAGAAAGCAGGCTAGGGAACCCAGTAAAAGC  840

seq1  AGCATTCTTCCATGGCCTCTGCTAAGCCATCTCTCCAGCCCCCTGAACTA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTTCCATGGCCTCTGCTAAGCCATCTCTCCAGCCCCCTGAACTA  890

seq1  CTTTTTTTAAAGCAGGGTTTCCTTACCGTAAAAGGTAGTATTTTCACAAG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTAAAGCAGGGTTTCCTTACCGTAAAAGGTAGTATTTTCACAAG  940

seq1  TGAAACAGATCCTAAGGTTTGGCTGCCTTAGCTAGTGTTTCTTGTACTCT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGATCCTAAGGTTTGGCTGCCTTAGCTAGTGTTTCTTGTACTCT  990

seq1  AGCAGCACAAGGTGATATTGGGTTTGCATCTCATGTGCCCAAGAAATAGC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCACAAGGTGATATTGGGTTTGCATCTCATGTGCCCAAGAAATAGC  1040

seq1  TGTTCTCCGTCCATTGTGCAGACCATCATCATAGGCTTTTAGAGGTATTT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCCGTCCATTGTGCAGACCATCATCATAGGCTTTTAGAGGTATTT  1090

seq1  CTAGTTTTCATGTTCTCCTGTCCCCCTTTGGTGACCCATCTCCTTCCATT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTCATGTTCTCCTGTCCCCCTTTGGTGACCCATCTCCTTCCATT  1140

seq1  CTTACTTGACACTTTCTGACTTCATTCTTGTCTCTGGCAGATATCAACCT  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTGACACTTTCTGACTTCATTCTTGTCTCTGGCAGATATCAACCT  1190

seq1  GAATTC  1190
      ||||||
seq2  GAATTC  1196

seq1: chr2_181078718_181079191
seq2: B6Ng01-248N06.g_65_538

seq1  GAATTCTTTTTTTTTCCCCCCAAAGATTTATTTATTACTATAAATGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTCCCCCCAAAGATTTATTTATTACTATAAATGAGTA  50

seq1  CACTGTTGCTGTCTTTACACATACCAGAAGAGGGTGTCAGATCTCATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGCTGTCTTTACACATACCAGAAGAGGGTGTCAGATCTCATTAG  100

seq1  ATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGTTGGGATTTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGTTGGGATTTGAAC  150

seq1  TCAGGACCTCTGGAAGAGCAGTCAGTACTCTTACCTGCTGAGCCATCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACCTCTGGAAGAGCAGTCAGTACTCTTACCTGCTGAGCCATCTTG  200

seq1  TCAGCCCCCAGCTGGAATTCTTTTGTTTTTGTTTTTGTTTTTGTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCCAGCTGGAATTCTTTTGTTTTTGTTTTTGTTTTTGTTTTTTT  250

seq1  CGAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTTTGT  300

seq1  AGACCAGGCTGGCCTCGAACTCAGAGATCCGCCTGCCTCTGCCTCCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTCGAACTCAGAGATCCGCCTGCCTCTGCCTCCCAAG  350

seq1  TGCTGGGATTAAAGGTGTGCGCCACCACGCCCGGCTCGAATTTTTATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAGGTGTGCGCCACCACGCCCGGCTCGAATTTTTATATT  400

seq1  TTCTTTTGAAACATTTAAACATTACCTCAATTCTTTTTTTGTTTTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGAAACATTTAAACATTACCTCAATTCTTTTTTTGTTTTTGTTT  450

seq1  TTGATTTTTTTTTCAAGACAGGGT  474
      ||||||||||||||||||||||||
seq2  TTGATTTTTTTTTCAAGACAGGGT  474