BAC Information

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BAC

Clone NameB6Ng01-252G16
Chromosome2 (Build37)
Map Location 41,535,777 - 41,638,149
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252G16.bB6Ng01-252G16.g
ACCGA059418GA059419
length1,0911,186
definitionB6Ng01-252G16.b B6Ng01-252G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,637,035 - 41,638,149)(41,535,777 - 41,536,608)
sequence
gaattccatataggttaattctttcctaatttaaatagcttcttatgcta
cacagcaatgtttttttttctctttcccctattaaattcctttattagct
ttcgatttcccagaagtcaatcctgcaagaagaacttaaatgaaaggttc
ttgtttgcttttttttctgtctatcttctctccttttgcttccattttct
tacctccccttctctactacttccttccacactctcactccctccttctc
ccttttctttatttccatcaaaataatagtgagaggtgagacacaaatat
aaagattattaatatttgaaggattaatgtagtcccttgcaaattctgat
tgaagcttaaatgtgtgacaaaatcatgtagaaagagggacaaaggacca
gaacatttagcactgtcattctagggagtaaagggttgcatatttgaggt
aagatcatctctcctggaactttgcaggtcttcctttctgctggaacttc
tcaagagaaagagagcagggttttcagagaccttgccttgtgaaatcaca
ctgaacagtctttggaaagatgtcagctattatttgttacaggtctcttg
agaatctttctcaaaattattccaaggaattctgtgttctccaacaatat
gttgtttaaatttgtttccttcatctttgatcattaggattacacttccc
aacacagatattttttataagtacccctggtacatattaaataaatttat
tagtcttacttcttctttcttatgtttaaatacatcagtggattttttta
aattcccataaatctaactatatatgtttacttttctcactttttaaatt
tatttcacccatctcatgtattgattaatgttcccttcagttccacactt
cttacttatcttggaaaatctgtccctttgctgcctatctggtcaaacca
cagcttacgttttttttttttcattttttttataggtatttaactcattt
acatttcatgctataacaaaggtccccatatcacccaccccacttccttg
ccaccactccctttttgtcctgaattcctgtactggggcat

gaattctttgtttagctctgtagcccattttttaatagggttattagatt
ttctggagaccatcttcttgagttctttatctatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttgctggcct
ttttgtcttattgacagtgtcttttgccttacagagctttgcaattttat
aagttcacatttgtcaattcgcgatcttacagcacaggccattgctgttc
tgttcaggaatttttcccctgtgcccatatctttgaggattttcccccct
ttctcctctataaatttcagtgtctctggttttatgtggagttccttgat
ccactcacttagacatgatcttattacaaggagataagaatggatcaatt
cgaattcttctacaacagcaccatttgttgaaaaacctatctttttccac
tggatggttttagctgccttgtcaaagatcaagtgactataggtgtgtgg
gttcatttctggttcttcaattcttttccttttgtctgcctgtctgtcct
tgtacctgtaccatacagtttttatcacaattgctctgtagtatagcttt
aggtcaggcatggtgattccccgagaggttcttttattgttgagaagaga
tttgctaccctaggttttttgtaattccagatgaattcacaaattgccct
tccttttgaccttaatactcagtatttcaataactgattacaattggagg
aacagtcttcaaagaggtaattagtgaaaataagcttactagtattgggt
tccaatcaaaaatttactttcagccttcttagaaagaaattggtgacaga
gagagtcaccagaagtttgcatgtgaaagaatggttgtgtgaaactctgt
gtggacatgccagcatttacaaacccagataccctggaggaattccattt
gtaagcattcggtttatggaactttccagattccatatcattgtggcacc
acaaatggtcttctattttgactatgtatcaaataataaaattctcagca
tgtttgaaagagcaaccccctttaaattaatgagaacaaagaaattttac
tagaaacctcatgaaagaatttatttagcatgtcatgactgacattgcca
gttgacctatctgagccatgtattctcccttgggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_41637035_41638149
seq2: B6Ng01-252G16.b_42_1132 (reverse)

seq1  ATGCCCCAGTACAGGGGAATTCCAGGGACAAAAAGGGGGAGTGGGTGGGC  50
      |||||||||||||  |||||||   |||||||||  ||||||||   |||
seq2  ATGCCCCAGTACA--GGAATTC--AGGACAAAAA--GGGAGTGG--TGGC  42

seq1  AGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGTTATAGCATTGGAA  100
      | || ||| ||||||||| ||||| |||||| |||||||||||||  |||
seq2  AAGGAAGT-GGGGTGGGT-GATAT-GGGGACCTTTGTTATAGCAT--GAA  87

seq1  ATGTAAATGAGTTAAATACCTAATAAAAAATGGAAAAAAAAAAAAAAAAA  150
      ||||||||||||||||||||| |||        |||||||  ||||||||
seq2  ATGTAAATGAGTTAAATACCT-ATA--------AAAAAAATGAAAAAAAA  128

seq1  AAAACGTAAGCCTGTGGTTTGACCAGATAGGCAGCAAAGGGACAGATTTT  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTAAG-CTGTGGTTTGACCAGATAGGCAGCAAAGGGACAGATTTT  177

seq1  CCAAGATAAGTAAGAAGTGTGGGAACTGAAGGGAACATTAATCAATACAT  250
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCAAGATAAGTAAGAAGTGT-GGAACTGAAGGGAACATTAATCAATACAT  226

seq1  GAGATGGGTGAAATAAATTTAAAAAGTGAGAAAAGTAAACATATATAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGGTGAAATAAATTTAAAAAGTGAGAAAAGTAAACATATATAGTT  276

seq1  AGATTTATGGGAATTTAAAAAAATCCACTGATGTATTTAAACATAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATGGGAATTTAAAAAAATCCACTGATGTATTTAAACATAAGAAA  326

seq1  GAAGAAGTAAGACTAATAAATTTATTTAATATGTACCAGGGGTACTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTAAGACTAATAAATTTATTTAATATGTACCAGGGGTACTTATA  376

seq1  AAAAATATCTGTGTTGGGAAGTGTAATCCTAATGATCAAAGATGAAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATCTGTGTTGGGAAGTGTAATCCTAATGATCAAAGATGAAGGAA  426

seq1  ACAAATTTAAACAACATATTGTTGGAGAACACAGAATTCCTTGGAATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTAAACAACATATTGTTGGAGAACACAGAATTCCTTGGAATAAT  476

seq1  TTTGAGAAAGATTCTCAAGAGACCTGTAACAAATAATAGCTGACATCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAAAGATTCTCAAGAGACCTGTAACAAATAATAGCTGACATCTTT  526

seq1  CCAAAGACTGTTCAGTGTGATTTCACAAGGCAAGGTCTCTGAAAACCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGACTGTTCAGTGTGATTTCACAAGGCAAGGTCTCTGAAAACCCTG  576

seq1  CTCTCTTTCTCTTGAGAAGTTCCAGCAGAAAGGAAGACCTGCAAAGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCTCTTGAGAAGTTCCAGCAGAAAGGAAGACCTGCAAAGTTCC  626

seq1  AGGAGAGATGATCTTACCTCAAATATGCAACCCTTTACTCCCTAGAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGATGATCTTACCTCAAATATGCAACCCTTTACTCCCTAGAATGA  676

seq1  CAGTGCTAAATGTTCTGGTCCTTTGTCCCTCTTTCTACATGATTTTGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTAAATGTTCTGGTCCTTTGTCCCTCTTTCTACATGATTTTGTCA  726

seq1  CACATTTAAGCTTCAATCAGAATTTGCAAGGGACTACATTAATCCTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTAAGCTTCAATCAGAATTTGCAAGGGACTACATTAATCCTTCAA  776

seq1  ATATTAATAATCTTTATATTTGTGTCTCACCTCTCACTATTATTTTGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATAATCTTTATATTTGTGTCTCACCTCTCACTATTATTTTGATG  826

seq1  GAAATAAAGAAAAGGGAGAAGGAGGGAGTGAGAGTGTGGAAGGAAGTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAGAAAAGGGAGAAGGAGGGAGTGAGAGTGTGGAAGGAAGTAGT  876

seq1  AGAGAAGGGGAGGTAAGAAAATGGAAGCAAAAGGAGAGAAGATAGACAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGGGAGGTAAGAAAATGGAAGCAAAAGGAGAGAAGATAGACAGA  926

seq1  AAAAAAAGCAAACAAGAACCTTTCATTTAAGTTCTTCTTGCAGGATTGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCAAACAAGAACCTTTCATTTAAGTTCTTCTTGCAGGATTGAC  976

seq1  TTCTGGGAAATCGAAAGCTAATAAAGGAATTTAATAGGGGAAAGAGAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGAAATCGAAAGCTAATAAAGGAATTTAATAGGGGAAAGAGAAAA  1026

seq1  AAAAACATTGCTGTGTAGCATAAGAAGCTATTTAAATTAGGAAAGAATTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATTGCTGTGTAGCATAAGAAGCTATTTAAATTAGGAAAGAATTA  1076

seq1  ACCTATATGGAATTC  1115
      |||||||||||||||
seq2  ACCTATATGGAATTC  1091


seq1: chr2_41535777_41536608
seq2: B6Ng01-252G16.g_446_1253

seq1  AGGAGATAAGAATGGATCAATTCGAATTCTTCTACAACAGCACCATTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATAAGAATGGATCAATTCGAATTCTTCTACAACAGCACCATTTGT  50

seq1  TGAAAAACCTATCTTTTTCCACTGGATGGTTTTAGCTGCCTTGTCAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACCTATCTTTTTCCACTGGATGGTTTTAGCTGCCTTGTCAAAGA  100

seq1  TCAAGTGACTATAGGTGTGTGGGTTCATTTCTGGTTCTTCAATTCTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGACTATAGGTGTGTGGGTTCATTTCTGGTTCTTCAATTCTTTTC  150

seq1  CTTTTGTCTGCCTGTCTGTCCTTGTACCTGTACCATACAGTTTTTATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCTGCCTGTCTGTCCTTGTACCTGTACCATACAGTTTTTATCAC  200

seq1  AATTGCTCTGTAGTATAGCTTTAGGTCAGGCATGGTGATTCCCCGAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTCTGTAGTATAGCTTTAGGTCAGGCATGGTGATTCCCCGAGAGG  250

seq1  TTCTTTTATTGTTGAGAAGAGATTTGCTACCCTAGGTTTTTTGTAATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATTGTTGAGAAGAGATTTGCTACCCTAGGTTTTTTGTAATTCC  300

seq1  AGATGAATTCACAAATTGCCCTTCCTTTTGACCTTAATACTCAGTATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATTCACAAATTGCCCTTCCTTTTGACCTTAATACTCAGTATTTC  350

seq1  AATAACTGATTACAATTGGAGGAACAGTCTTCAAAGAGGTAATTAGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGATTACAATTGGAGGAACAGTCTTCAAAGAGGTAATTAGTGAA  400

seq1  AATAAGCTTACTAGTATTGGGTTCCAATCAAAAA-TTACTTTCAGCCTTC  449
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATAAGCTTACTAGTATTGGGTTCCAATCAAAAATTTACTTTCAGCCTTC  450

seq1  TTAGAAAGAAATTGGTGACAGAGAGAGTCACCAGAAGTTTGCATGTGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGAAATTGGTGACAGAGAGAGTCACCAGAAGTTTGCATGTGAAA  500

seq1  GAATGGTTGTGTGAAAACTCTGTGTGGACATGCCAGCATTTACAAACCCA  549
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATGGTTGTGTG-AAACTCTGTGTGGACATGCCAGCATTTACAAACCCA  549

seq1  GATACCCTGGAGGAATTCCATTTGTAAGCATTCGGTTTATGGAACTTTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCTGGAGGAATTCCATTTGTAAGCATTCGGTTTATGGAACTTTCC  599

seq1  AGATTCCATATCCATTGTTGGCACCACAAATGGTCTTCTATTTTGACTAA  649
      ||||||||||| ||||| |||||||||||||||||||||||||||||| |
seq2  AGATTCCATAT-CATTG-TGGCACCACAAATGGTCTTCTATTTTGACT-A  646

seq1  TGTATCAAATTAATAAAATTCCTCCAGCATTGTTTGATAGAGCAACCCCC  699
      ||||||||| |||||||||||   ||||| ||||||| ||||||||||||
seq2  TGTATCAAA-TAATAAAATTC--TCAGCA-TGTTTGAAAGAGCAACCCCC  692

seq1  CTTTTAAAATTATTGAGAACAAAAGAAAATTTTTACTAGAAAACTCATGA  749
         || |||||| ||||||| |||||||  |||||||||||| |||||| 
seq2  ---TTTAAATTAATGAGAAC-AAAGAAA--TTTTACTAGAAACCTCATG-  735

seq1  AAAGATATTAATATAGCATGTCAATGACCCTGTGGACCATTGCCAAGTTG  799
      ||||| ||| || ||||||||| |||||    ||   ||||||| |||||
seq2  AAAGA-ATTTATTTAGCATGTC-ATGAC----TG--ACATTGCC-AGTTG  776

seq1  ACTTATCTGAAAGCAAATGTATTCTCC--TGGGAA  832
      || ||||||  |||  |||||||||||  ||||||
seq2  ACCTATCTG--AGC-CATGTATTCTCCCTTGGGAA  808


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