BAC Information

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BAC

Clone NameB6Ng01-252K01
Chromosome2 (Build37)
Map Location 58,164,020 - 58,282,444
singlet/doubletdoublet
Overlap geneAcvr1c, LOC667062
Upstream geneGpd2, LOC271788, Galnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926
Downstream geneAcvr1, LOC674940, Upp2, BC062650, Pkp4, LOC625354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252K01.bB6Ng01-252K01.g
ACCGA059572GA059573
length1,187368
definitionB6Ng01-252K01.b B6Ng01-252K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,281,268 - 58,282,444)(58,164,020 - 58,164,771)
sequence
acgctccaaaccttttaaaagggatcgatgatgctgatgatgataataaa
aagtaaaaactcgttaaaagtaatctgaggtcaatggaaatcacgctaga
tgcacacttggacaaatgcagggataagaactggaaaagccaggatgttc
ataaatgtaaatgacttctttctcatttcccattatagttttgtgactat
tagaaatggtgaatctcaggatgagaattttatctagagctagatagaaa
ctcttttatagagtcaattcatcaggaagacaaatcccacaagtatttat
gcatggacctaataacagaggctgaaaatattaaaaggagatataagatc
acctacattcatagttggaaatttctgaatatcttctgtggtggggttag
aagctgggactttatacatgtaagacactttatcagttgagctctgtcct
ctctgaaattccaaggacaaatagaggtaaacatgatttaatcaaattta
tatatattatagacatatatgaacatatttgtataaaatgaatttatata
aaaatttacaaaaaaatcaactaaatttacaaaaaaatcaactaaataaa
acatttgacatggggcttttggtggtagcttagtggtacagtacttgcct
atcatgtacaaggccctgggttcacctccagcactataatcaagcaacca
aaaaaataccatttatgaagatagatagtatgttcactattgcatatagt
tcttcctcctgagaattcaataccttctgtgggtacttgcatacatgtgg
tgtacattcagactcacagatacatgtgtgcacatgaacacacacacaaa
tatatcttttaaatgtaactttaaaattggacaatgcataagcaagcata
tttgcttttctctttgctgtaaaagcagccaaatagttacaaaagtaatc
caaatgaagataggagaaacaaaggcaaataggaaaatagtacattaaat
gtaaatgggtctaaacatttcatttaaaagtaaaattgactaacattgac
tttaagaactcattccaataacataacaaagtacaacacacacacgcaca
caaccagctcacacacatcatttaatgtttaacacaaaacaaaacctatt
aagaaattctgggtatgttcagttacagtctatctat
aatgacgtacacagcatttcttgtagacataatagttaatgggtacaaaa
catacatttcctcttctatggataatgtttagaactcaattacggcaacc
tattgtcatagagtaatcttaataaagtcatgaaaatgcttgggcaaaaa
tgaatatacacttaataattaaaaaaatgtttcacctaaatgaaaaataa
cagagaaatctttccattaatactgttaacataataatttgacacaattc
tgtaaacctcagtattttggaatctggagacacaaagatagccgtgaatt
tgagagcagcttgagctacaaagtgagtaggaacaagttatatctcaagc
cagaaccgccagctaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_58281268_58282444
seq2: B6Ng01-252K01.b_27_1187 (reverse)

seq1  ATAGATAGATGTGTACACTGAACATACCAGGATTCTCTAATTAGGTGTTT  50
      |||||||||  |||| ||||||||||||  || | ||| | |||  ||||
seq2  ATAGATAGA-CTGTA-ACTGAACATACCCAGAATTTCTTAATAG--GTTT  46

seq1  TGTTTTGTGTTTTAAACATTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGT  100
      |||||||||  ||||||||| | ||    |||||||| |  ||  |||||
seq2  TGTTTTGTG--TTAAACATTAAATG---ATGTGTGTGAG-CTGGTTGTGT  90

seq1  GTGTGTGTGTGTGTGTACTTTTGTTTATGTTATTTGAAATGAGTTTCTTA  150
      | |||||||||| ||||||||   |||||||| ||| |||||| ||||||
seq2  GCGTGTGTGTGT-TGTACTTT--GTTATGTTA-TTGGAATGAG-TTCTTA  135

seq1  AAGTCAATGTAGTTCAATTTTACTTTTAAATTGGAATGTTTAGA-CCATT  199
      ||||||||||   ||||||||||||||||| || |||||||||| |||||
seq2  AAGTCAATGTTAGTCAATTTTACTTTTAAA-TGAAATGTTTAGACCCATT  184

seq1  TACATTTAATGTACTATTTTCCTATTTTGCCTTTTGTTTCTCCTATCTTC  249
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  TACATTTAATGTACTATTTTCCTA-TTTGCC-TTTGTTTCTCCTATCTTC  232

seq1  ATTTGGATTACCTTTTGTAACTATTTTGGCTGCTTTTACAGCAAAGAGAA  299
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  ATTTGGATTA-CTTTTGTAACTA-TTTGGCTGCTTTTACAGCAAAGAGAA  280

seq1  AAGCAAATATGCTTGCTTATGCATTGTCCAATTTTAAAGTTACATTT-AA  348
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGCAAATATGCTTGCTTATGCATTGTCCAATTTTAAAGTTACATTTAAA  330

seq1  AGATATATTTGTGTGTGTGTTCATGTGCACACATGTATCTGTGAGTCTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATATTTGTGTGTGTGTTCATGTGCACACATGTATCTGTGAGTCTGA  380

seq1  ATGTACACCACATGTATGCAAGTACCCACAGAAGGTATTGAATTCTCAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACCACATGTATGCAAGTACCCACAGAAGGTATTGAATTCTCAGG  430

seq1  AGGAAGAACTATATGCAATAGTGAACATACTATCTATCTTCATAAATGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAACTATATGCAATAGTGAACATACTATCTATCTTCATAAATGGT  480

seq1  ATTTTTTTGGTTGCTTGATTATAGTGCTGGAGGTGAACCCAGGGCCTTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTGGTTGCTTGATTATAGTGCTGGAGGTGAACCCAGGGCCTTGT  530

seq1  ACATGATAGGCAAGTACTGTACCACTAAGCTACCACCAAAAGCCCCATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATAGGCAAGTACTGTACCACTAAGCTACCACCAAAAGCCCCATGT  580

seq1  CAAATGTTTTATTTAGTTGATTTTTTTGTAAATTTAGTTGATTTTTTTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTTTATTTAGTTGATTTTTTTGTAAATTTAGTTGATTTTTTTGT  630

seq1  AAATTTTTATATAAATTCATTTTATACAAATATGTTCATATATGTCTATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTATATAAATTCATTTTATACAAATATGTTCATATATGTCTATA  680

seq1  ATATATATAAATTTGATTAAATCATGTTTACCTCTATTTGTCCTTGGAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATAAATTTGATTAAATCATGTTTACCTCTATTTGTCCTTGGAAT  730

seq1  TTCAGAGAGGACAGAGCTCAACTGATAAAGTGTCTTACATGTATAAAGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAGGACAGAGCTCAACTGATAAAGTGTCTTACATGTATAAAGTC  780

seq1  CCAGCTTCTAACCCCACCACAGAAGATATTCAGAAATTTCCAACTATGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCTAACCCCACCACAGAAGATATTCAGAAATTTCCAACTATGAA  830

seq1  TGTAGGTGATCTTATATCTCCTTTTAATATTTTCAGCCTCTGTTATTAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGATCTTATATCTCCTTTTAATATTTTCAGCCTCTGTTATTAGG  880

seq1  TCCATGCATAAATACTTGTGGGATTTGTCTTCCTGATGAATTGACTCTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCATAAATACTTGTGGGATTTGTCTTCCTGATGAATTGACTCTAT  930

seq1  AAAAGAGTTTCTATCTAGCTCTAGATAAAATTCTCATCCTGAGATTCACC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTTTCTATCTAGCTCTAGATAAAATTCTCATCCTGAGATTCACC  980

seq1  ATTTCTAATAGTCACAAAACTATAATGGGAAATGAGAAAGAAGTCATTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAATAGTCACAAAACTATAATGGGAAATGAGAAAGAAGTCATTTA  1030

seq1  CATTTATGAACATCCTGGCTTTTCCAGTTCTTATCCCTGCATTTGTCCAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATGAACATCCTGGCTTTTCCAGTTCTTATCCCTGCATTTGTCCAA  1080

seq1  GTGTGCATCTAGCGTGATTTCCATTGACCTCAGATTAC-TTTAAC-ATTT  1146
      |||||||||||||||||||||||||||||||||||||| |||||| | ||
seq2  GTGTGCATCTAGCGTGATTTCCATTGACCTCAGATTACTTTTAACGAGTT  1130

seq1  TTTACTTTTTATTATCATCATCAGCATCATC  1177
      |||||||||||||||||||||||||||||||
seq2  TTTACTTTTTATTATCATCATCAGCATCATC  1161

seq1: chr2_58164020_58164771
seq2: B6Ng01-252K01.g_66_439

seq1  GAATTCAATGACGTACACAGCATTTCTTGTAGACATAATAGTTAATGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGACGTACACAGCATTTCTTGTAGACATAATAGTTAATGGGT  50

seq1  ACAAAACATACATTTCCTCTTCTATGGATAATGTTTAGAACTCAATTACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACATACATTTCCTCTTCTATGGATAATGTTTAGAACTCAATTACG  100

seq1  GCAACCTATTGTCATAGAGTAATCTTAATAAAGTCATGAAAATGCTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTATTGTCATAGAGTAATCTTAATAAAGTCATGAAAATGCTTGGG  150

seq1  CAAAAATGAATATACACTTAATAATTAAAAAAATGTTTCACCTAAATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGAATATACACTTAATAATTAAAAAAATGTTTCACCTAAATGAA  200

seq1  AAATAACAGAGAAATCTTTCCATTAATACTGTTAACATAATAATTTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAGAGAAATCTTTCCATTAATACTGTTAACATAATAATTTGACA  250

seq1  CAATTCTGTAAACCTCAGTATTTTGGAATCTGGAGACACAAAGATAGCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTGTAAACCTCAGTATTTTGGAATCTGGAGACACAAAGATAGCCG  300

seq1  TGAATTTGAGAGCAGCTTGAGCTACAAAGTGAGTAGGAACAAGCTATATC  350
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGAATTTGAGAGCAGCTTGAGCTACAAAGTGAGTAGGAACAAGTTATATC  350

seq1  TCAAGCCAGAACCGCCAGCAAATATATAAACAAAGTAAAAAGTAAAAAGG  400
      ||||||||||||||||||| ||||                          
seq2  TCAAGCCAGAACCGCCAGCTAATA--------------------------  374

seq1  GGCAAAGCACTTTCCTTGGAGACAGCAAGTCTTTTCTTCCACAACCTCCA  450
                                                        
seq2  --------------------------------------------------  374

seq1  AATGTTAACCAAAACATTATGTACGTGATCAATATGTACATGATCACATT  500
                                                        
seq2  --------------------------------------------------  374

seq1  TGAAACTGACATCTCCGGAATAGGCAGAGCATGGTTACCGACCACACTCT  550
                                                        
seq2  --------------------------------------------------  374

seq1  CTGATGACATGAAAATGGTGCACGGCTATCTTTGTGTCTCCAGATTCCAA  600
                                                        
seq2  --------------------------------------------------  374

seq1  AATACTGAGGTTTACAGAATTGTATCCAATTATTATGTTAACAGTATTAA  650
                                                        
seq2  --------------------------------------------------  374

seq1  TTAACTGGTTCCCAGCTGTGTAAAAACACAAGAAAGAGAAACTAAATGAA  700
                                                        
seq2  --------------------------------------------------  374

seq1  CACAAGTCAGAATGTAGAATTTCAAAATGACTATAGGACACTAGAACTAA  750
                                                        
seq2  --------------------------------------------------  374

seq1  TA  752
        
seq2  --  374