BAC Information

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BAC

Clone NameB6Ng01-252L16
Chromosome2 (Build37)
Map Location 3,770,976 - 3,911,285
singlet/doubletdoublet
Overlap geneLOC100040257
Upstream gene9630050M13Rik, Nmt2, Rpp38, Acbd7, Olah, Meig1, Dclre1c, Suv39h2, Hspa14, Armetl1, LOC100040219, LOC666495, 3110001A13Rik
Downstream geneLOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252L16.bB6Ng01-252L16.g
ACCGA059648GA059649
length1,1211,169
definitionB6Ng01-252L16.b B6Ng01-252L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,910,164 - 3,911,285)(3,770,976 - 3,771,906)
sequence
gaattctcccatgactgaacatctatgtggtttttactcgttgtttgcta
tttcaggtgcttgtaaacaatttatctttttataggatgcatgtgtcttt
gcctaatatattttcatattaaaatgtaaaatttagtcactgttcagagt
ttgggctttgggtaagtgactgggtctgactgtatcaatgagctagtccg
tgagttcatcttctgatgagctattggaaagtaatagaaattcagggaac
gatatctacttgagaggaagtggtcccctagtgtgcctgtgtggcctggc
tcttgtctacaaaacattttatttatttgctaagattttatcttctcttc
cttctccttccagtttcttcatataaagctaagacattataatgatacct
aaagtatttccctactgaagactccttcagttctctcaggctgccacttc
ttcctcatgatgcacctgttttgaaagatacatcaacttctcgtgggctg
gggtttgccacttactggagacatcaacttaatttccatgcatttaaaaa
ataaataatgctgagtatttcttcttttgtgggcttataagtgtatgcat
atttgtctgttggagacttggtaattttagagcttttatgagttcttcat
accatttttacaataaatccccttcccattatattaatagatttgaaaat
gagcagagaccctaagcaacacttagtagggttattaatatgctgcttgg
acctcctgcaattactcaaaacaaactattttatttgctaatattttatc
tttatgacatctgcgcatatctttcaaaagtattggagaatcttccctat
ttcctttactcattgctgggagaaaacataagacaaagcaaatgaaggga
aggtgttgttgttggttttttgttgttgttttctgaaaatggtcgcttat
acacaggaaagcctaaggcatactttatagtacatcatagataatcagta
aaagaaagaaatgacgaataaaagatctgctcaggagcgtatggtccaca
gcaggaatgacatggtgttgcattgactagctctaccgtatgccaggctg
gagtgtagaaaagcactctac
gaattctctgacactggatgtgtttggtattcttcctatcagataggtta
tactgcagcaggtaccagataggagccctctaaggagagcgagatgacag
gcagacagacagacagacagacatagacagatcaatcaataggactactg
acccacagcttgaagatactgtccctgaattgttaccactttcagatgcc
attgtgaagcttcagggtctaacctaatgggcagtacaccaacgttcctt
caatctcctcttcatttaatttgctagaacagctgtgggaacttgggaaa
gccctgtttatgtttacatatattttagaaaggatatcatgggaatctca
ataaatgccactcagagagaagcataaggcaaggcttatgggaagcacag
aacttctataccctctctgggtgagcaggctcctagaaatgtctctgtgt
gaagttctctgaatgctattcttttgggagttttaggaggctttcatagg
catggttgattaaattaggggcattggcaatcaacttaactttctgtctt
ctccctggacactgggaacacagtgggagttaaatatctcaatcctctaa
ctattccttgataattagaggatgctctaataacatccttgaccattctg
aacctacctgttgaatgacagccatcaatcaattcattggcgtacagaga
caattgctttggagagtctaaggaatttttagggtttgagtgtcaggagt
aggcaaagaagccaggaggagtatgcttaggattttaggttataatctat
ctgtagttttctctaggaacaaaactatatcattcacaaattcagagttc
atacatactcagtacataaattctatggataaccagattgggctatgcac
caaagtgatcagtcagcatagggacctatagcttccttctctctaccaga
agatgtgtgaggatcatatctgactggccctgcacccaggaccctgagag
tatccagcatctttatcagtttctgtgtgcagtctgagtctactccctga
tgtgcgctatactgacccagccatgcagaccgttggtagaggtcacagaa
ttctcctgcctatgattccaggatgctcagaagtctaatgaattcatagg
gaacctactgatacatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_3910164_3911285
seq2: B6Ng01-252L16.b_43_1163 (reverse)

seq1  GTAG-GTGCTTTCCTACACTCCAG-CTGCCA-ACGGTAGAGCTTAGTC-A  46
      |||| ||||||| ||||||||||| ||| || |||||||||| ||||| |
seq2  GTAGAGTGCTTTTCTACACTCCAGCCTGGCATACGGTAGAGC-TAGTCAA  49

seq1  TGCACCACCATGTCATTCCTGCCTTGGTGGAACATACGCTCCTTGTGCAG  96
      |||| |||||||||||||||||    ||||| |||||||||| || ||||
seq2  TGCAACACCATGTCATTCCTGC---TGTGGACCATACGCTCC-TGAGCAG  95

seq1  ATCTTTTATTCCTCTTTCTTTTCTTTTTACTGATTATCTATGATGTACTA  146
      ||||||||||| || ||  |||| ||||||||||||||||||||||||||
seq2  ATCTTTTATTCGTCATTTCTTTC-TTTTACTGATTATCTATGATGTACTA  144

seq1  TAAAGTATGCCTTGGGCTCTCCTGTGTATAAGCG-CCATTTTCAGAAAAA  195
      ||||||||||||| |||| ||||||||||||||| |||||||||| ||||
seq2  TAAAGTATGCCTTAGGCTTTCCTGTGTATAAGCGACCATTTTCAG-AAAA  193

seq1  CAACAACAAAAAACCAACAACAACACCTTCCC-TCATTTGCTTTGTCTTA  244
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAACAACAAAAAACCAACAACAACACCTTCCCTTCATTTGCTTTGTCTTA  243

seq1  TGTTTTCTCCCAGCAATGAGTAAAGGAAATAGGGAAGATTCTCCAATACT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCCCAGCAATGAGTAAAGGAAATAGGGAAGATTCTCCAATACT  293

seq1  TTTGAAAGATATGCGCAGATGTCATAAAGATAAAATATTAGCAAATAAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGATATGCGCAGATGTCATAAAGATAAAATATTAGCAAATAAAA  343

seq1  TAGTTTGTTTTGAGTAATTGCAGGAGGTCCAAGCAGCATATTAATAACCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGTTTTGAGTAATTGCAGGAGGTCCAAGCAGCATATTAATAACCC  393

seq1  TACTAAGTGTTGCTTAGGGTCTCTGCTCATTTTCAAATCTATTAATATAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGTGTTGCTTAGGGTCTCTGCTCATTTTCAAATCTATTAATATAA  443

seq1  TGGGAAGGGGATTTATTGTAAAAATGGTATGAAGAACTCATAAAAGCTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGGGATTTATTGTAAAAATGGTATGAAGAACTCATAAAAGCTCT  493

seq1  AAAATTACCAAGTCTCCAACAGACAAATATGCATACACTTATAAGCCCAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACCAAGTCTCCAACAGACAAATATGCATACACTTATAAGCCCAC  543

seq1  AAAAGAAGAAATACTCAGCATTATTTATTTTTTAAATGCATGGAAATTAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAAATACTCAGCATTATTTATTTTTTAAATGCATGGAAATTAA  593

seq1  GTTGATGTCTCCAGTAAGTGGCAAACCCCAGCCCACGAGAAGTTGATGTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTCTCCAGTAAGTGGCAAACCCCAGCCCACGAGAAGTTGATGTA  643

seq1  TCTTTCAAAACAGGTGCATCATGAGGAAGAAGTGGCAGCCTGAGAGAACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAAAACAGGTGCATCATGAGGAAGAAGTGGCAGCCTGAGAGAACT  693

seq1  GAAGGAGTCTTCAGTAGGGAAATACTTTAGGTATCATTATAATGTCTTAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGTCTTCAGTAGGGAAATACTTTAGGTATCATTATAATGTCTTAG  743

seq1  CTTTATATGAAGAAACTGGAAGGAGAAGGAAGAGAAGATAAAATCTTAGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATGAAGAAACTGGAAGGAGAAGGAAGAGAAGATAAAATCTTAGC  793

seq1  AAATAAATAAAATGTTTTGTAGACAAGAGCCAGGCCACACAGGCACACTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAAATGTTTTGTAGACAAGAGCCAGGCCACACAGGCACACTA  843

seq1  GGGGACCACTTCCTCTCAAGTAGATATCGTTCCCTGAATTTCTATTACTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCACTTCCTCTCAAGTAGATATCGTTCCCTGAATTTCTATTACTT  893

seq1  TCCAATAGCTCATCAGAAGATGAACTCACGGACTAGCTCATTGATACAGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAGCTCATCAGAAGATGAACTCACGGACTAGCTCATTGATACAGT  943

seq1  CAGACCCAGTCACTTACCCAAAGCCCAAACTCTGAACAGTGACTAAATTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCAGTCACTTACCCAAAGCCCAAACTCTGAACAGTGACTAAATTT  993

seq1  TACATTTTAATATGAAAATATATTAGGCAAAGACACATGCATCCTATAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTAATATGAAAATATATTAGGCAAAGACACATGCATCCTATAAA  1043

seq1  AAGATAAATTGTTTACAAGCACCTGAAATAGCAAACAACGAGTAAAAACC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAATTGTTTACAAGCACCTGAAATAGCAAACAACGAGTAAAAACC  1093

seq1  ACATAGATGTTCAGTCATGGGAGAATTC  1122
      ||||||||||||||||||||||||||||
seq2  ACATAGATGTTCAGTCATGGGAGAATTC  1121

seq1: chr2_3770976_3771906
seq2: B6Ng01-252L16.g_331_1237

seq1  CATTTAATTTGCTAGAACAGCTGTGGGAACTTGGGAAAGCCCTGTTTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATTTGCTAGAACAGCTGTGGGAACTTGGGAAAGCCCTGTTTATG  50

seq1  TTTACATATATTTTAGAAAGGATATCATGGGAATCTCAATAAATGCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATATATTTTAGAAAGGATATCATGGGAATCTCAATAAATGCCACT  100

seq1  CAGAGAGAAGCATAAGGCAAGGCTTATGGGAAGCACAGAACTTCTATACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAAGCATAAGGCAAGGCTTATGGGAAGCACAGAACTTCTATACC  150

seq1  CTCTCTGGGTGAGCAGGCTCCTAGAAATGTCTCTGTGTGAAGTTCTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGGTGAGCAGGCTCCTAGAAATGTCTCTGTGTGAAGTTCTCTGA  200

seq1  ATGCTATTCTTTTGGGAGTTTTAGGAGGCTTTCATAGGCATGGTTGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTCTTTTGGGAGTTTTAGGAGGCTTTCATAGGCATGGTTGATTA  250

seq1  AATTAGGGGCATTGGCAATCAACTTAACTTTCTGTCTTCTCCCTGGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGGGCATTGGCAATCAACTTAACTTTCTGTCTTCTCCCTGGACAC  300

seq1  TGGGAACACAGTGGGAGTTAAATATCTCAATCCTCTAACTATTCCTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACACAGTGGGAGTTAAATATCTCAATCCTCTAACTATTCCTTGAT  350

seq1  AATTAGAGGATGCTCTAATAACATCCTTGACCATTCTGAACCTACCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAGGATGCTCTAATAACATCCTTGACCATTCTGAACCTACCTGTT  400

seq1  GAATGACAGCCATCAATCAATTCATTGGCGTACAGAGACAATTGCTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACAGCCATCAATCAATTCATTGGCGTACAGAGACAATTGCTTTGG  450

seq1  AGAGTCTAAGGAATTTTTAGGGTTTGAGTGTCAGGAGTAGGCAAAGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTAAGGAATTTTTAGGGTTTGAGTGTCAGGAGTAGGCAAAGAAGC  500

seq1  CAGGAGGAGTATGCTTAGGATTTTAGGTTATAATCTATCTGTAGTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAGTATGCTTAGGATTTTAGGTTATAATCTATCTGTAGTTTTCT  550

seq1  CTAGGAACAAAACTATATCATTCACAAATTCAGAGTTCATACATACTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAACAAAACTATATCATTCACAAATTCAGAGTTCATACATACTCAG  600

seq1  TACATAAATTCTATGGATAACCAGATTGGGCTATGCACCAAAGTGATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAATTCTATGGATAACCAGATTGGGCTATGCACCAAAGTGATCAG  650

seq1  TCAGCATAGGGACCTATAGCTTCCTTCTCTCTACCAGAAGGATGTGTGAG  700
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCAGCATAGGGACCTATAGCTTCCTTCTCTCTACCAGAA-GATGTGTGAG  699

seq1  GATCATATCCTGACTGGCCCTGCACCCAGGACCCTGAGAGTATCCAGCAT  750
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GATCATAT-CTGACTGGCCCTGCACCCAGGACCCTGAGAGTATCCAGCAT  748

seq1  CTTTATTCAGTTTCTGTGTTGCAGTCTGAGTCTACCTCCCTTGATGTGGC  800
      ||||| |||||||||||| ||||||||||||||| ||||| |||||| ||
seq2  CTTTA-TCAGTTTCTGTG-TGCAGTCTGAGTCTA-CTCCC-TGATGT-GC  793

seq1  GCTATAACTGACCCAGCCATGCAGGACGGTTGGTAGAGGGTCAACAGATT  850
      ||||| ||||||||||||||||| ||| ||||||||| |||| ||||| |
seq2  GCTAT-ACTGACCCAGCCATGCA-GACCGTTGGTAGA-GGTC-ACAGAAT  839

seq1  TTCTTCTTTGCTATAGAATTTCCCAAGGAGTTGCTTCAGGAAGGTCTAAA  900
      |   || |  |||| ||  ||||  ||||  ||| ||||  | |||||| 
seq2  T--CTCCTGCCTAT-GA--TTCC--AGGA--TGC-TCAG--AAGTCTAA-  876

seq1  TAGAATCCATAGGG-ACCTACTGATCCATGTG  931
        |||| ||||||| |||||||||| ||||||
seq2  -TGAATTCATAGGGAACCTACTGATACATGTG  907