BAC Information

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BAC

Clone NameB6Ng01-257A21
Chromosome2 (Build37)17 (Build37)
Map Location 44,854,410 - 44,855,5764,499,440 - 4,499,752
singlet/doubletsingletsinglet
Overlap geneZeb2
Upstream geneArhgap15, Gtdc1
Downstream geneLOC100042661, LOC100041337, LOC666604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257A21.bB6Ng01-257A21.g
ACCGA062851GA062852
length1,148893
definitionB6Ng01-257A21.b B6Ng01-257A21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,854,410 - 44,855,576)(4,499,440 - 4,499,752)
sequence
gaattctcaggtgttctttcaggtggtgcttgtacttgaaggccttgcca
cactccgtgcacttgaacttgcggttacctgctccttgggttagcatttg
gtgctgtaaaaggagaaaaatggccgtcatctttgttcaggaggcacaaa
ggagcttgcttaggaatctttcccaagacctcttttttagacaggctgag
aggtctgagttcatgcttatttatctggtcagactttcagagttgcaata
aaagtggtaatgctggtaataaaatgggaatttttctcttttaagaaagt
gcttcccgtgcacgtcggacccttgcttcacaattacgcctgacatcttt
tttctacagcatttctttgacccttgagatgagaaagtatgattgtagag
atgctcatggctccttttggtttagtgcagaatctgaaccctaaaggctt
cctttcaaaacacggctggcttgaggaggaaaaaaatactttcctgaaaa
ttataaaattgttcttttcttttaacccacacttaaaacaaatttttgtg
aagttttctgtttccaggtaaaagtgtaaactaaatcaaactgaaattta
aagaaatggagacctctccccacccccaaataaaagacaaaatcaaaaaa
aaaaaaaaccctttgactataaatatttggtatgcctgtttaaatatccc
attcactgtgctactggcccatgttaactgtgtttttcttaggtgctgcc
tatcagatttgattcattatcaaataagagacaacatcttgggttatgtc
tgcttgaacagctttatcacaagtcagtaggaaagacttcaatgacattt
cattttccgttttagtagtgtgcaagaaccaacagaaaaaaaaaagtttg
ctgaaaagacaagttagaggcagcacagataccatccaacaccgctgacc
tttttgacaagggggaaacgcagtgtgacttgaaattctaaggggaaaaa
aaaaacaacaccacagtcatccacttctgatgctcaagtagagcagcctt
tcttgcagcaatgaccaaaagctttgcaaggacagcccagaaaccggttg
acaactgctagggtgtctggtaatcttcccatctatgggacagatggt

gaattcagacatgcccttagtacacatctctaatctctaacaatgaaggt
aaggttacttgttaaggaagcagtcatctttgagagtaacttcaaattga
gaggcagacaaaaggcatttcaaatcatagaaaattttgacagaatgagt
cagagataggatacatccaactctctagagaacagcacagaaaggagagg
ctacttgagagcagtgaagagagagagagagagagagagagagagagaga
gagagagagaggcagttttagcagaacaattttacaaagacaggtggcaa
agaaaacaagagaaatataagtgaagatagaacaagcccgagaatgagga
gccagaaggttagaacacattgtcaaagttagtgtgaggccaagcagagc
aattcagtgagaagccaagagaaaccagattgaatcagtcagcttggaag
attagattgtggaggctagaagcttccaggtttgggcctagagatagcta
aaactgagaaagaaacactctgggctcagcccaagctgtgtattcacata
gcttgggtacagctctcatctcattcttctatatgaagaaataaaagcaa
aatttacactggaggggtcataaagaaaacaatatacatttttaagtcaa
ggggaaaaaaagagacaatggggtggaaagatggctcagcagttaacagc
acttgctgatattacagaggtctcagctcagttaccagcacctctgtgac
agctctcattcagctgtgactccagatctgatgccctattctggcctctc
cctacccacaacaatcatatacatggcacatacacaggcaaagtacatat
acaaaaaaaagaaagaaagaacgaaagaacgaaagacaaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_44854410_44855576
seq2: B6Ng01-257A21.b_45_1192

seq1  GAATTCTCAGGTGTTCTTTCAGGTGGTGCTTGTACTTGAAGGCCTTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGTGTTCTTTCAGGTGGTGCTTGTACTTGAAGGCCTTGCCA  50

seq1  CACTCCGTGCACTTGAACTTGCGGTTACCTGCTCCTTGGGTTAGCATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCGTGCACTTGAACTTGCGGTTACCTGCTCCTTGGGTTAGCATTTG  100

seq1  GTGCTGTAAAAGGAGAAAAATGGCCGTCATCTTTGTTCAGGAGGCACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTAAAAGGAGAAAAATGGCCGTCATCTTTGTTCAGGAGGCACAAA  150

seq1  GGAGCTTGCTTAGGAATCTTTCCCAAGACCTCTTTTTTAGACAGGCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTGCTTAGGAATCTTTCCCAAGACCTCTTTTTTAGACAGGCTGAG  200

seq1  AGGTCTGAGTTCATGCTTATTTATCTGGTCAGACTTTCAGAGTTGCAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGAGTTCATGCTTATTTATCTGGTCAGACTTTCAGAGTTGCAATA  250

seq1  AAAGTGGTAATGCTGGTAATAAAATGGGAATTTTTCTCTTTTAAGAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGTAATGCTGGTAATAAAATGGGAATTTTTCTCTTTTAAGAAAGT  300

seq1  GCTTCCCGTGCACGTCGGACCCTTGCTTCACAATTACGCCTGACATCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCGTGCACGTCGGACCCTTGCTTCACAATTACGCCTGACATCTTT  350

seq1  TTTCTACAGCATTTCTTTGACCCTTGAGATGAG-AAGTATGATTGTAGAG  399
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTCTACAGCATTTCTTTGACCCTTGAGATGAGAAAGTATGATTGTAGAG  400

seq1  ATGCTCATGGCTCCTTTTGGTTTAGTGCAGAATCTGAACCCTAAAGGCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATGGCTCCTTTTGGTTTAGTGCAGAATCTGAACCCTAAAGGCTT  450

seq1  CCTTTCAAAACACGGCTGGCTTGAGGAGGAAAAAAATACTTTCCTGAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAAAACACGGCTGGCTTGAGGAGGAAAAAAATACTTTCCTGAAAA  500

seq1  TTATAAAATTGTTCTTTTCTTTTAACCCACACTTAAAACAAATTTTTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAATTGTTCTTTTCTTTTAACCCACACTTAAAACAAATTTTTGTG  550

seq1  AAGTTTTCTGTTTCCAGGTAAAAGTGTAAACTAAATCAAACTGAAATTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCTGTTTCCAGGTAAAAGTGTAAACTAAATCAAACTGAAATTTA  600

seq1  AAGAAATGGAGACCTCTCCCCACCCCCAAATAAAAGACAAAATCAAAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGGAGACCTCTCCCCACCCCCAAATAAAAGACAAAATCAAAAAA  650

seq1  AAAAAAAACCCTTTGACTATAAATATTTGGTATGCCTGTTTAAATATCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCCTTTGACTATAAATATTTGGTATGCCTGTTTAAATATCCC  700

seq1  ATTCACTGTGCTACTGGCCCATGTTAACTGTGTTTTTCTTAGGTGCTGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGTGCTACTGGCCCATGTTAACTGTGTTTTTCTTAGGTGCTGCC  750

seq1  TATCAGATTTGATTCATTATCAAATAAGAGACAACATCTTGGGTTATGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGATTTGATTCATTATCAAATAAGAGACAACATCTTGGGTTATGTC  800

seq1  TGCTTGAACAGCTTTATCACAAGTCAGTAGGAAAGACTTCAATGACATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAACAGCTTTATCACAAGTCAGTAGGAAAGACTTCAATGACATTT  850

seq1  CATTTTCCGTTTTAGTAGTGTGCAAGAACCAACAGAAAAAAAAAAGTTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCGTTTTAGTAGTGTGCAAGAACCAACAGAAAAAAAAAAGTTTG  900

seq1  CTGAAAAGACAAGTTAGAGGCAGCACAGATACCATCCAACACCGCTGACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGACAAGTTAGAGGCAGCACAGATACCATCCAACACCGCTGACC  950

seq1  TTTTTGAACAAGGGGGAAACGCAGTGTGACTTGAAATTCTAAGGGGGAAA  999
      |||||| |||||||||||||||||||||||||||||||||||||||  ||
seq2  TTTTTG-ACAAGGGGGAAACGCAGTGTGACTTGAAATTCTAAGGGG--AA  997

seq1  AAAAAAAACAACAACCCAACAGTCATCCACTCTGGATGCTCAAGGTAGGA  1049
      |||||||||||||   | |||||||||||||   ||||||||| ||| ||
seq2  AAAAAAAACAACA---CCACAGTCATCCACTTCTGATGCTCAA-GTA-GA  1042

seq1  GGCCAGCCTTTTTCTGCAGCAATGACACAAAAGCCTTTTGCAAAAAGACA  1099
      |  |||||||| | |||||||||||| |||||||  |||||  || ||||
seq2  G--CAGCCTTTCT-TGCAGCAATGAC-CAAAAGC--TTTGC--AAGGACA  1084

seq1  GCCCAGAAACGGTGTGACAACTGCTAGGGTGTGCTG--AATCTTCCCACA  1147
      |||||||||| |  |||||||||||||||||| |||  ||||||||||  
seq2  GCCCAGAAACCGGTTGACAACTGCTAGGGTGT-CTGGTAATCTTCCCA--  1131

seq1  TTCCTAGTGAGACAGATGGT  1167
         ||| || ||||||||||
seq2  --TCTA-TGGGACAGATGGT  1148


seq1: chr17_4499440_4499752
seq2: B6Ng01-257A21.g_240_327 (reverse)

seq1  CCTCTCTCTCTCTGTCTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTC  50
                               |||||||||||||||||||||||||
seq2  ------------------------CCTCTCTCTCTCTCTCTCTCTCTCTC  26

seq1  TCTCTCTCTCTCTCTCTCTCTCATGTTCCCACTCTGAGATAGCCT-TCCT  99
      ||||||||||||||||||| |||     |  |||| |  |||||| ||||
seq2  TCTCTCTCTCTCTCTCTCT-TCA-----CTGCTCTCAAGTAGCCTCTCCT  70

seq1  TTCT-TCCTCCCTTCCCCAGTAAAGCTCTTGCCATAGATCTCTTTCCTGG  148
      |||| | ||   ||| | ||                              
seq2  TTCTGTGCT--GTTCTCTAG------------------------------  88

seq1  TGTGATTTCTTAGCAGCACACCTTGGCATGGCCTACCAAATGTACCCCAC  198
                                                        
seq2  --------------------------------------------------  88

seq1  ACACATACCTCACACTTTATCCCCAGCGCCTATAATTCCAGTACTGGAGG  248
                                                        
seq2  --------------------------------------------------  88

seq1  GTTTGGTACAGGAAAATCACTGGTACTATCTGGTCAGTCACAGTAGCCAA  298
                                                        
seq2  --------------------------------------------------  88

seq1  ATTGCTGTTCTCTAG  313
                     
seq2  ---------------  88


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