BAC Information

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BAC

Clone NameB6Ng01-258B17
Chromosome2 (Build37)5 (Build37)
Map Location 119,413,571 - 119,414,423124,739,674 - 124,739,937
singlet/doubletsingletsinglet
Overlap geneLOC100043307
Upstream geneLOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik
Downstream geneOip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258B17.bB6Ng01-258B17.g
ACCGA063631GA063632
length853959
definitionB6Ng01-258B17.b B6Ng01-258B17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(119,413,571 - 119,414,423)(124,739,674 - 124,739,937)
sequence
gaattcaaggccattctccaagtttgaggctagtttattctacaggagac
cctgtttcaaaaactggggtttgaaattggcttagcagttaacatactgc
ttttacagagaggatcagagttctgttctcagcatacatactgattggct
catgatggctggctccagttcaagaggaatccagtgttctggcctctgct
cacatgaacactcagattaacactctttacacacacacaaacctgtgcaa
ttaaaaataaagtctaaatccaggagtggtggtgcacgcttttaacccca
gcacttgggaggcagaggcaggtggatttctgagttcaaggccagcctgg
tttacagagtgagttccaggacagccagggctacacagagaaaccctgtc
ttgaaaaaacaaaaataaaataaaaaaataaatagataaagtctaaaaaa
tttcaagattagccaggcaatggggcatacctttaatcccagcattcagg
aggcagaggtaggaagatctctgaatttgaggccagcctgatcttcagag
taagttcaggacagccagggctacacagagaaaccctgccttggaaaaac
aaaaaaacattcaaggtctaaattgggttggtgcttataggcaataattc
caatgaaaatctacattttcctggagatactaaaaaaagaaatttaatgt
tattttatattattcagactgaatcatacctgaattgggctctgtgattc
ctgtctgattttttgtatgaccttgaaatcagaaattttgttggtacaaa
agcttctgagagtgtgcactgtgtgtgtgtgtgtgtgtgtgtgtatgtgt
gta
gaattcaaaggcgcttcaggcccatagctcagaagcacagaaaaaaaaga
ccctggatattcatgggaggactgagccctcaatttgtgcttagtattgg
ctcagtggttgaattgaattatgagacacttagttggggtatggtataga
atcagttgctagtttgccagtgggagaaattatcatactagggatcatgg
aaacttgtgttaattgttgttaaacttgtaagaaactgaatttggggact
ggagaaatggcccagtggttaagagaactggttactcttgcagaggatcc
aggttcggttaccagtacccacacagtgggtcacacccatctataactat
agttccaagggatctgatggaccaggtgcacagatatgtatagaaacaaa
ctgtaattagtaacttaaaaaaaaaaaggatttgagtgtgatatgatgca
gacctgtaatcccagagtatgtacatgtatcacatgcgtgcactaaccct
cagaggccagaagaaggtactggatcctagacctggagttacttgtggtt
gagagccactatgtggatactgggaatcaaacacaggtcctctagaacaa
tagcaggtgctcttaagtgctgagtcagctctcctttcttcttacaattt
tttatttaaaaagggtaatattcccatcaataggcaagtgagttttcaac
aatgggtgttgaagccaggaagtggtggtacatgcctttaatcccagcac
ttgggaggcagaggcaggtggatttctgagttcaaggcacgcctggtcta
cagagtgagttccaggacagccaagactacacagagaaaccctgtctcaa
aaaaaaaaagacatcagctggtgtggtggcgtatgtctttaatctcagca
tctgggataagaggtgggcagatttctgtgagtctatgccagcttggtat
acataatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119413571_119414423
seq2: B6Ng01-258B17.b_42_894

seq1  GAATTCAAGGCCATTCTCCAAGTTTGAGGCTAGTTTATTCTACAGGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCATTCTCCAAGTTTGAGGCTAGTTTATTCTACAGGAGAC  50

seq1  CCTGTTTCAAAAACTGGGGTTTGAAATTGGCTTAGCAGTTAACATACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCAAAAACTGGGGTTTGAAATTGGCTTAGCAGTTAACATACTGC  100

seq1  TTTTACAGAGAGGATCAGAGTTCTGTTCTCAGCATACATACTGATTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGAGAGGATCAGAGTTCTGTTCTCAGCATACATACTGATTGGCT  150

seq1  CATGATGGCTGGCTCCAGTTCAAGAGGAATCCAGTGTTCTGGCCTCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGGCTGGCTCCAGTTCAAGAGGAATCCAGTGTTCTGGCCTCTGCT  200

seq1  CACATGAACACTCAGATTAACACTCTTTACACACACACAAACCTGTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAACACTCAGATTAACACTCTTTACACACACACAAACCTGTGCAA  250

seq1  TTAAAAATAAAGTCTAAATCCAGGAGTGGTGGTGCACGCTTTTAACCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAAAGTCTAAATCCAGGAGTGGTGGTGCACGCTTTTAACCCCA  300

seq1  GCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGG  350

seq1  TTTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTC  400

seq1  TTGAAAAAACAAAAATAAAATAAAAAAATAAATAGATAAAGTCTAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAAACAAAAATAAAATAAAAAAATAAATAGATAAAGTCTAAAAAA  450

seq1  TTTCAAGATTAGCCAGGCAATGGGGCATACCTTTAATCCCAGCATTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGATTAGCCAGGCAATGGGGCATACCTTTAATCCCAGCATTCAGG  500

seq1  AGGCAGAGGTAGGAAGATCTCTGAATTTGAGGCCAGCCTGATCTTCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGTAGGAAGATCTCTGAATTTGAGGCCAGCCTGATCTTCAGAG  550

seq1  TAAGTTCAGGACAGCCAGGGCTACACAGAGAAACCCTGCCTTGGAAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCAGGACAGCCAGGGCTACACAGAGAAACCCTGCCTTGGAAAAAC  600

seq1  AAAAAAACATTCAAGGTCTAAATTGGGTTGGTGCTTATAGGCAATAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACATTCAAGGTCTAAATTGGGTTGGTGCTTATAGGCAATAATTC  650

seq1  CAATGAAAATCTACATTTTCCTGGAGATACTAAAAAAAGAAATTTAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAATCTACATTTTCCTGGAGATACTAAAAAAAGAAATTTAATGT  700

seq1  TATTTTATATTATTCAGACTGAATCATACCTGAATTGGGCTCTGTGATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATATTATTCAGACTGAATCATACCTGAATTGGGCTCTGTGATTC  750

seq1  CTGTCTGATTTTTTGTATGACCTTGAAATCAGAAATTTTGTTGGTACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGATTTTTTGTATGACCTTGAAATCAGAAATTTTGTTGGTACAAA  800

seq1  AGCTTCTGAGAGTGTGCACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGCTTCTGAGAGTGTGCACTGTGTGTGTGTGTGTGTGTGTGTGTATGTGT  850

seq1  GTA  853
      |||
seq2  GTA  853

seq1: chr5_124739674_124739937
seq2: B6Ng01-258B17.g_475_921

seq1  TAGTAAGACTTAAAAAAAAAAAG--TCAAACTAAGCTAGGCAGTGCATGC  48
      |||||  ||||||||||||||||  |   | |  | || |   ||||  |
seq2  TAGTA--ACTTAAAAAAAAAAAGGATTTGAGTGTGATATG--ATGCAGAC  46

seq1  CTTTAATCCCA-------------------------GCACT----CT-GG  68
      || ||||||||                         |||||    ||  |
seq2  CTGTAATCCCAGAGTATGTACATGTATCACATGCGTGCACTAACCCTCAG  96

seq1  AGGC------AGGGAAC----------------AGTT-----------GG  85
      ||||      | || ||                ||||            |
seq2  AGGCCAGAAGAAGGTACTGGATCCTAGACCTGGAGTTACTTGTGGTTGAG  146

seq1  GGCC---------ATACAGAG----AAACCCTG--CCTCAAAAA------  114
       |||         |||| | |    |||| | |  |||| | ||      
seq2  AGCCACTATGTGGATACTGGGAATCAAACACAGGTCCTCTAGAACAATAG  196

seq1  ----------------------------------------ACAA------  118
                                              ||||      
seq2  CAGGTGCTCTTAAGTGCTGAGTCAGCTCTCCTTTCTTCTTACAATTTTTT  246

seq1  ----AAAAAG--------------------------------------AC  126
          ||||||                                      | 
seq2  ATTTAAAAAGGGTAATATTCCCATCAATAGGCAAGTGAGTTTTCAACAAT  296

seq1  GGGCG-------------GTGGTGGCACATGCCTTTAATCCCAGCACTTG  163
      ||| |             ||||||| ||||||||||||||||||||||||
seq2  GGGTGTTGAAGCCAGGAAGTGGTGGTACATGCCTTTAATCCCAGCACTTG  346

seq1  GGAGGCAGAGGCAGGTGGATTTCTGAGTGCGAAGCCAGCCTGGTCTACAG  213
      |||||||||||||||||||||||||||| | | ||  |||||||||||||
seq2  GGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCACGCCTGGTCTACAG  396

seq1  AGTGAGCTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAA  263
      |||||| ||||||||||||| | |||||||||||||||||||||| ||||
seq2  AGTGAGTTCCAGGACAGCCAAGACTACACAGAGAAACCCTGTCTCAAAAA  446

seq1  A  264
      |
seq2  A  447