BAC Information

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BAC

Clone NameB6Ng01-259C15
Chromosome2 (Build37)
Map Location 114,813,920 - 114,921,986
singlet/doubletdoublet
Overlap genenone
Upstream geneGja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4, LOC100043219, LOC100043222
Downstream geneLOC100043232, LOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259C15.bB6Ng01-259C15.g
ACCGA064418GA064419
length1,2451,160
definitionB6Ng01-259C15.b B6Ng01-259C15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,813,920 - 114,815,163)(114,920,803 - 114,921,986)
sequence
gaattcctcattttaaccacaggttctatttcaatcattaataacattct
ttggccactgagattcctggtaatagtatttgtcatgcacattgtaataa
ctgttgacatatatgaagtatgtctcttcagataagggattagtccacct
ccatttaaaaataaaatcaacttttaattctagaattttagatataagaa
agattatatagtatgtggtacatagtttgtctaaattaagcatctgattt
aaaatattaattaatttcaactacattgttatggttcatttcatccatgt
gcattaattaatatcgtttatctgttactagtgtgtcgcaagcttcctaa
ttctgcaacctttaataccgtttttcatgttgtggtaattcccaaccata
aagttatttcattgctacttcataactgtaattttgctattgttatgaat
tgtaatataagtatctgatatgcaggatgtgtatatgtagccccaaggag
ccatgacccagattgagaagcactgtcacatatattcatatgtagttgac
tgaaatccataacttactgattttcccttacctttgaactggtgtcatat
agggagcagagaaagtcctgagtctgtggagtgaatatcttttgataaag
gtgcagccatgttaatgacttcaaattgctgggctcagagagatggcaaa
gccttccaagggaactgaaggtgagtgttgatagattgtgcagaaatttt
tatttttactagagcttcctctcttcatatatttatggcctgaagattga
tcccctgaagagattcctcctacagaaattagctgcatatcataaaccct
gcctccctattaatctgtatgtaataatccaacctataataactgtccag
ctgtatgcaacaattccacatctctattcaactctacttaataaatacac
tgagatcctagggtcctgagacttctccatggagactccagaccatctga
tcccattattcttgtctgtgtagccctttggacatttattcgtttcttca
tcttcccagttatatccaaatcatggaaccatgctagaatacaaaaccaa
gttccccttttctccttacaggggtttctattctgattccacagtagatt
aagtctttgccttttggatcttacagttcttgggcctttctcggactctg
accatgacagttaggaatattgataaattgtgtgaatacacttta

gaattcttgctcacacctttagccagtcatattattacaagatggcttta
tttggcatgatgtataaaaggcatataaataggcgagcgcataagcatac
aagcaccattatgtgaatgcatacggatcagtaacatatataaaatgaca
cagtgcattttgagatgctgaaaatgtgggtgcgaaatacaaaggacttg
tggaattctttctgtagcaggaagtatgggaaccattaatcatgttataa
cttaaaagatagaaatgtgtagcaagcagaaagaattcagttcaggtctg
ctggcccaaatacaatgggctgaatagcaaagccttgagatttcttagat
gcataatgttctcacaaatggcccatgctatgctaataaaactattgtga
ctaggggcttttgcagtagaaactgacagatgaggcagagttaagtactt
tttcagacaggctactacagtaaatcattaaggcacacaaacaatcatcc
ttcatcagcctgcaatttgtttcatagcgatcgcaaatcgaaaacaatgt
aaacaaacaaatcgacaactaatgaacatccccccactgctcactggaaa
tagatctacaactttacaagaacactttatccaacacattgtcaactcat
tgtaaacacatctacaactcataaacaactcattacccaggatgttgtca
cctcgttgcaattagagccgaatgctaactgtactgtatattccccgcac
tgaatcagattatggtcctggaaagaaaaccgaggagagccagttcaaca
gtgagaaggctcaccgccccccgccccgccacccccatcactatgacttt
aacaatcatctgaccaggctcgtatagaaattgtactgcattttaagctt
ttcctcaggtagcccacattttccactcacacaggaaggcagcagtttct
caacacgagtctctttcatagagaaagaaaatgtgtaaagtattccccag
cgatagttaaactcacagcttttactgtaatggctttgtgtgactgcgtt
agcgtctactggtatataatcttgtggggctgtgttttttaatgctcggc
tgatgattatttagaagcaacctgaactacatgtacaccaatttcttgta
tgattaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_114813920_114815163
seq2: B6Ng01-259C15.b_42_1286

seq1  GAATTCCTCATTTTAACCACAGGTTCTATTTCAATCATTAATAACATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATTTTAACCACAGGTTCTATTTCAATCATTAATAACATTCT  50

seq1  TTGGCCACTGAGATTCCTGGTAATAGTATTTGTCATGCACATTGTAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCACTGAGATTCCTGGTAATAGTATTTGTCATGCACATTGTAATAA  100

seq1  CTGTTGACATATATGAAGTATGTCTCTTCAGATAAGGGATTAGTCCACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGACATATATGAAGTATGTCTCTTCAGATAAGGGATTAGTCCACCT  150

seq1  CCATTTAAAAATAAAATCAACTTTTAATTCTAGAATTTTAGATATAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAAAAATAAAATCAACTTTTAATTCTAGAATTTTAGATATAAGAA  200

seq1  AGATTATATAGTATGTGGTACATAGTTTGTCTAAATTAAGCATCTGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATATAGTATGTGGTACATAGTTTGTCTAAATTAAGCATCTGATTT  250

seq1  AAAATATTAATTAATTTCAACTACATTGTTATGGTTCATTTCATCCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTAATTAATTTCAACTACATTGTTATGGTTCATTTCATCCATGT  300

seq1  GCATTAATTAATATCGTTTATCTGTTACTAGTGTGTCGCAAGCTTCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAATTAATATCGTTTATCTGTTACTAGTGTGTCGCAAGCTTCCTAA  350

seq1  TTCTGCAACCTTTAATACCGTTTTTCATGTTGTGGTAATTCCCAACCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAACCTTTAATACCGTTTTTCATGTTGTGGTAATTCCCAACCATA  400

seq1  AAGTTATTTCATTGCTACTTCATAACTGTAATTTTGCTATTGTTATGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTTCATTGCTACTTCATAACTGTAATTTTGCTATTGTTATGAAT  450

seq1  TGTAATATAAGTATCTGATATGCAGGATGTGTATATGTAGCCCCAAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATAAGTATCTGATATGCAGGATGTGTATATGTAGCCCCAAGGAG  500

seq1  CCATGACCCAGATTGAGAAGCACTGTCACATATATTCATATGTAGTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACCCAGATTGAGAAGCACTGTCACATATATTCATATGTAGTTGAC  550

seq1  TGAAATCCATAACTTACTGATTTTCCCTTACCTTTGAACTGGTGTCATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCCATAACTTACTGATTTTCCCTTACCTTTGAACTGGTGTCATAT  600

seq1  AGGGAGCAGAGAAAGTCCTGAGTCTGTGGAGTGAATATCTTTTGATAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCAGAGAAAGTCCTGAGTCTGTGGAGTGAATATCTTTTGATAAAG  650

seq1  GTGCAGCCATGTTAATGACTTCAAATTGCTGGGCTCAGAGAGATGGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCCATGTTAATGACTTCAAATTGCTGGGCTCAGAGAGATGGCAAA  700

seq1  GCCTTCCAAGGGAACTGAAGGTGAGTGTTGATAGATTGTGCAGAAATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCAAGGGAACTGAAGGTGAGTGTTGATAGATTGTGCAGAAATTTT  750

seq1  TATTTTTACTAGAGCTTCCTCTCTTCATATATTTATGGCCTGAAGATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTACTAGAGCTTCCTCTCTTCATATATTTATGGCCTGAAGATTGA  800

seq1  TCCCCTGAAGAGATTCCTCCTACAGAAATTAGCTGCATATCATAAACCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGAAGAGATTCCTCCTACAGAAATTAGCTGCATATCATAAACCCT  850

seq1  GCCTCCCTATTAATCTGTATGTAATAATCCAACCTATAATAACTGTCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCTATTAATCTGTATGTAATAATCCAACCTATAATAACTGTCCAG  900

seq1  CTGTATGCAACAATTCCACATCTCTATTCAACTCTACTTAATAAATACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGCAACAATTCCACATCTCTATTCAACTCTACTTAATAAATACAC  950

seq1  TGAGATCCTAGGGTCCTGAGACTTCTCCAATGGAGACTCCAGACCATCTG  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGAGATCCTAGGGTCCTGAGACTTCTCC-ATGGAGACTCCAGACCATCTG  999

seq1  ATCCCATTATTC-TGTCTGTGTAGCCCTTT-GACATTTATTCGTTTCTTC  1048
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  ATCCCATTATTCTTGTCTGTGTAGCCCTTTGGACATTTATTCGTTTCTTC  1049

seq1  ATCTTCCCAGTTATATCCAAATCATGGAACCATGCTAG-ATACAACACCA  1097
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  ATCTTCCCAGTTATATCCAAATCATGGAACCATGCTAGAATACAAAACCA  1099

seq1  AGT--CCCCTTTCT-CTTACAGTG--TTCTATTCTGAATTCCACAGTAGA  1142
      |||  ||| ||||| ||||||| |  |||||||||| |||||||||||||
seq2  AGTTCCCCTTTTCTCCTTACAGGGGTTTCTATTCTG-ATTCCACAGTAGA  1148

seq1  TTTAAAGTCTT--GCTTTTGGTTCTTACAGTTTCTTGGCCTTT-TCTGAC  1189
      ||  |||||||   ||||||| ||||||||||  | ||||||| || |||
seq2  TT--AAGTCTTTGCCTTTTGGATCTTACAGTTCTTGGGCCTTTCTCGGAC  1196

seq1  TTCTTGACCATGACAGTTTTAAGAATTATTGATAAATATTGTTGAATACA  1239
      |   ||||||||||||||   || | |||||||||||  || ||||||||
seq2  T--CTGACCATGACAGTT---AGGAATATTGATAAATTGTG-TGAATACA  1240

seq1  TTTTA  1244
       ||||
seq2  CTTTA  1245


seq1: chr2_114920803_114921986
seq2: B6Ng01-259C15.g_65_1224 (reverse)

seq1  AAGTT-ATCATTACAAGAAAATTGTGGTGACATTTGTAAGTTCAAGTTTG  49
      ||||| |||| ||||||||| | |||   |||| |   ||||| || |||
seq2  AAGTTAATCA-TACAAGAAATTGGTG--TACATGT---AGTTC-AGGTTG  43

seq1  CTTTCCAAAAATAATCATCCAGCCGAGCATTAAAAAAACACCAGCCCCAA  99
      |||     |||||||||| |||||||||||| |||||||| |||||    
seq2  CTT---CTAAATAATCAT-CAGCCGAGCATT-AAAAAACA-CAGCC----  83

seq1  CCAAAAGATTATATACCAGGTAAGGACGCTAAACGCAGTTCACACAAAGC  149
      ||| |||||||||||||| |||  |||||| ||||||| |||||||||||
seq2  CCACAAGATTATATACCA-GTA--GACGCT-AACGCAG-TCACACAAAGC  128

seq1  CATTACAGTAAAAGCTGTGAGTTTTACTATCGCTTGGGGAATACTTTACA  199
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  CATTACAGTAAAAGCTGTGAGTTTAACTATCGC-TGGGGAATACTTTACA  177

seq1  CATTTTCTTTTCCTCTATGAAAGAGACTCGTGTTGAGAAACTGCTGCCTT  249
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTT--CTCTATGAAAGAGACTCGTGTTGAGAAACTGCTGCCTT  225

seq1  CCTGTGTGAGTGGAAAATGTGGGCTACCTGAGGAAAAGCTTAAAATGCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGAGTGGAAAATGTGGGCTACCTGAGGAAAAGCTTAAAATGCAG  275

seq1  TACAATTTCTATACGAGCCTGGTCAGATGATTGTTAAAGTCATAGTGATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTTCTATACGAGCCTGGTCAGATGATTGTTAAAGTCATAGTGATG  325

seq1  GGGGTGGCGGGGCGGGGGGCGGTGAGCCTTCTCACTGTTGAACTGGCTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGCGGGGCGGGGGGCGGTGAGCCTTCTCACTGTTGAACTGGCTCT  375

seq1  CCTCGGTTTTCTTTCCAGGACCATAATCTGATTCAGTGCGGGGAATATAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGTTTTCTTTCCAGGACCATAATCTGATTCAGTGCGGGGAATATAC  425

seq1  AGTACAGTTAGCATTCGGCTCTAATTGCAACGAGGTGACAACATCCTGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGTTAGCATTCGGCTCTAATTGCAACGAGGTGACAACATCCTGGG  475

seq1  TAATGAGTTGTTTATGAGTTGTAGATGTGTTTACAATGAGTTGACAATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGTTGTTTATGAGTTGTAGATGTGTTTACAATGAGTTGACAATGT  525

seq1  GTTGGATAAAGTGTTCTTGTAAAGTTGTAGATCTATTTCCAGTGAGCAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATAAAGTGTTCTTGTAAAGTTGTAGATCTATTTCCAGTGAGCAGT  575

seq1  GGGGGGATGTTCATTAGTTGTCGATTTGTTTGTTTACATTGTTTTCGATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGATGTTCATTAGTTGTCGATTTGTTTGTTTACATTGTTTTCGATT  625

seq1  TGCGATCGCTATGAAACAAATTGCAGGCTGATGAAGGATGATTGTTTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATCGCTATGAAACAAATTGCAGGCTGATGAAGGATGATTGTTTGTG  675

seq1  TGCCTTAATGATTTACTGTAGTAGCCTGTCTGAAAAAGTACTTAACTCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAATGATTTACTGTAGTAGCCTGTCTGAAAAAGTACTTAACTCTG  725

seq1  CCTCATCTGTCAGTTTCTACTGCAAAAGCCCCTAGTCACAATAGTTTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTGTCAGTTTCTACTGCAAAAGCCCCTAGTCACAATAGTTTTAT  775

seq1  TAGCATAGCATGGGCCATTTGTGAGAACATTATGCATCTAAGAAATCTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATAGCATGGGCCATTTGTGAGAACATTATGCATCTAAGAAATCTCA  825

seq1  AGGCTTTGCTATTCAGCCCATTGTATTTGGGCCAGCAGACCTGAACTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGCTATTCAGCCCATTGTATTTGGGCCAGCAGACCTGAACTGAA  875

seq1  TTCTTTCTGCTTGCTACACATTTCTATCTTTTAAGTTATAACATGATTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGCTTGCTACACATTTCTATCTTTTAAGTTATAACATGATTAA  925

seq1  TGGTTCCCATACTTCCTGCTACAGAAAGAATTCCACAAGTCCTTTGTATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCCATACTTCCTGCTACAGAAAGAATTCCACAAGTCCTTTGTATT  975

seq1  TCGCACCCACATTTTCAGCATCTCAAAATGCACTGTGTCATTTTATATAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCACCCACATTTTCAGCATCTCAAAATGCACTGTGTCATTTTATATAT  1025

seq1  GTTACTGATCCGTATGCATTCACATAATGGTGCTTGTATGCTTATGCGCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGATCCGTATGCATTCACATAATGGTGCTTGTATGCTTATGCGCT  1075

seq1  CGCCTATTTATATGCCTTTTATACATCATGCCAAATAAAGCCATCTTGTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTATTTATATGCCTTTTATACATCATGCCAAATAAAGCCATCTTGTA  1125

seq1  ATAATATGACTGGCTAAAGGTGTGAGCAAGAATTC  1184
      |||||||||||||||||||||||||||||||||||
seq2  ATAATATGACTGGCTAAAGGTGTGAGCAAGAATTC  1160


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